Wall clock time and date at job start Mon Mar 30 2020 01:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31834 * 119.58446 * 2 1 4 4 C 1.31768 * 121.87692 * 179.68399 * 3 2 1 5 5 C 1.39048 * 120.81378 * 0.57456 * 4 3 2 6 6 N 1.39624 * 120.45969 * 179.70543 * 5 4 3 7 7 C 1.38810 * 120.00050 * 324.57828 * 6 5 4 8 8 C 1.39610 * 119.84553 * 331.29062 * 7 6 5 9 9 C 1.36309 * 120.15895 * 179.75990 * 8 7 6 10 10 C 1.40908 * 119.83633 * 0.52962 * 9 8 7 11 11 C 1.41106 * 120.15231 * 179.69654 * 10 9 8 12 12 H 1.07996 * 119.99997 * 204.20700 * 11 10 9 13 13 C 1.39846 * 119.99695 * 24.20431 * 11 10 9 14 14 N 1.30916 * 120.00058 * 19.25141 * 13 11 10 15 15 Si 1.86803 * 119.99884 * 199.24832 * 13 11 10 16 16 H 1.48497 * 109.46890 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.47111 * 120.00315 * 15 13 11 18 18 H 1.48502 * 109.47031 * 240.00505 * 15 13 11 19 19 C 1.40899 * 119.69405 * 359.72381 * 10 9 8 20 20 C 1.36315 * 119.84410 * 359.97438 * 19 10 9 21 21 C 1.39197 * 119.08234 * 359.43976 * 5 4 3 22 22 C 1.38966 * 119.58703 * 179.97438 * 2 1 3 23 23 N 1.39712 * 120.44611 * 0.02562 * 22 2 1 24 24 H 1.08997 * 109.47201 * 270.02846 * 1 2 3 25 25 H 1.08994 * 109.46933 * 30.02606 * 1 2 3 26 26 H 1.08998 * 109.46764 * 150.02426 * 1 2 3 27 27 H 1.08000 * 119.59475 * 180.29096 * 4 3 2 28 28 H 0.97003 * 119.99362 * 144.58217 * 6 5 4 29 29 H 1.08006 * 119.91944 * 359.97438 * 8 7 6 30 30 H 1.07995 * 120.08385 * 180.26003 * 9 8 7 31 31 H 0.97003 * 119.99791 * 179.97438 * 14 13 11 32 32 H 1.08001 * 120.08002 * 179.97438 * 19 10 9 33 33 H 1.07989 * 119.92641 * 179.97438 * 20 19 10 34 34 H 1.07993 * 120.85701 * 180.29469 * 21 5 4 35 35 H 0.96995 * 120.00120 * 180.02562 * 23 22 2 36 36 H 0.97004 * 119.99750 * 0.02615 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1579 1.1465 0.0000 4 6 3.4745 1.1992 0.0062 5 6 4.2340 0.0345 0.0010 6 7 5.6287 0.0990 0.0014 7 6 6.2768 1.1128 -0.6907 8 6 5.6781 1.6767 -1.8188 9 6 6.3066 2.6759 -2.5004 10 6 7.5687 3.1317 -2.0704 11 6 8.2282 4.1613 -2.7748 12 1 9.3029 4.2513 -2.7187 13 6 7.4900 5.0650 -3.5455 14 7 6.2064 5.2105 -3.3333 15 14 8.3356 6.0647 -4.8779 16 1 9.7788 5.7169 -4.9168 17 1 7.7177 5.7594 -6.1931 18 1 8.1826 7.5121 -4.5830 19 6 8.1694 2.5543 -0.9342 20 6 7.5267 1.5600 -0.2585 21 6 3.5846 -1.1967 0.0011 22 6 2.1931 -1.2085 0.0005 23 7 1.4953 -2.4188 0.0005 24 1 -0.3633 0.0005 1.0276 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 3.9698 2.1589 0.0107 28 1 6.1447 -0.5647 0.4854 29 1 4.7130 1.3228 -2.1502 30 1 5.8405 3.1141 -3.3704 31 1 5.6945 5.8377 -3.8677 32 1 9.1367 2.8986 -0.5994 33 1 7.9860 1.1162 0.6123 34 1 4.1462 -2.1192 0.0019 35 1 1.9807 -3.2585 0.0013 36 1 0.5252 -2.4193 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210287862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:09 Heat of formation + Delta-G solvation = 54.269290 kcal Electronic energy + Delta-G solvation = -19261.768861 eV Core-core repulsion = 16323.875572 eV Total energy + Delta-G solvation = -2937.893289 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.09097 -38.04570 -35.73182 -34.66124 -33.34640 -31.32541 -29.77429 -29.48524 -28.56246 -26.30888 -24.60173 -22.79854 -21.62755 -21.05740 -20.13834 -17.69768 -17.34975 -16.91247 -16.10734 -15.60286 -15.13094 -14.89415 -14.46143 -14.24706 -13.93226 -13.22994 -12.81429 -12.74144 -12.37552 -12.10456 -12.03255 -11.93261 -11.74839 -11.58835 -11.12202 -11.04956 -10.87634 -10.57914 -10.20481 -9.82260 -9.44108 -9.15993 -9.10169 -8.23319 -7.62446 -7.41349 -6.80464 -6.53052 -4.22850 1.66648 1.84038 2.78113 3.02215 3.08917 3.13642 3.20982 3.76913 3.94006 4.14040 4.27620 4.62929 4.91334 5.06424 5.42295 5.51330 5.67177 5.70552 5.75195 5.82483 6.08315 6.15635 6.24223 6.29837 6.55011 6.78202 6.87016 7.01237 7.07241 7.20823 7.40485 7.48721 7.56060 7.69578 7.74963 8.01805 8.14362 8.31220 8.42017 8.61951 8.62844 8.88380 8.97324 10.18314 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028552 B = 0.004253 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.442610 B = 6581.943853 C = 7267.837219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.009 4.009 3 N -0.419 5.419 4 C 0.013 3.987 5 C 0.201 3.799 6 N -0.670 5.670 7 C 0.025 3.975 8 C -0.120 4.120 9 C -0.142 4.142 10 C 0.098 3.902 11 C -0.460 4.460 12 H 0.078 0.922 13 C 0.076 3.924 14 N -0.790 5.790 15 Si 0.905 3.095 16 H -0.261 1.261 17 H -0.272 1.272 18 H -0.275 1.275 19 C -0.206 4.206 20 C -0.117 4.117 21 C -0.228 4.228 22 C 0.198 3.802 23 N -0.874 5.874 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.156 0.844 28 H 0.395 0.605 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.281 0.719 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.395 0.605 36 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.114 -10.908 4.258 13.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.152 4.152 3 N -0.127 5.127 4 C -0.153 4.153 5 C 0.095 3.905 6 N -0.292 5.292 7 C -0.069 4.069 8 C -0.141 4.141 9 C -0.162 4.162 10 C 0.095 3.905 11 C -0.489 4.489 12 H 0.096 0.904 13 C -0.142 4.142 14 N -0.415 5.415 15 Si 0.730 3.270 16 H -0.184 1.184 17 H -0.197 1.197 18 H -0.200 1.200 19 C -0.227 4.227 20 C -0.138 4.138 21 C -0.263 4.263 22 C 0.091 3.909 23 N -0.416 5.416 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.173 0.827 28 H 0.230 0.770 29 H 0.109 0.891 30 H 0.137 0.863 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.143 0.857 35 H 0.222 0.778 36 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -7.762 -9.816 4.092 13.166 hybrid contribution 0.906 -0.915 -0.414 1.352 sum -6.856 -10.730 3.678 13.254 Atomic orbital electron populations 1.20355 0.89991 1.02142 1.01658 1.20453 0.96153 0.87024 1.11571 1.67209 1.09595 1.27855 1.08037 1.22467 0.88407 0.97935 1.06453 1.18539 0.85000 0.93385 0.93556 1.41498 1.01498 1.30968 1.55244 1.17170 0.95474 0.97642 0.96630 1.20304 0.99249 0.99484 0.95032 1.20927 0.97243 0.97030 1.01029 1.17614 0.91710 0.91283 0.89921 1.19526 0.95043 1.10031 1.24305 0.90398 1.25903 0.94702 0.96761 0.96884 1.69874 1.07936 1.29653 1.34000 0.86310 0.80784 0.79226 0.80712 1.18418 1.19717 1.20000 1.20551 1.01338 1.02131 0.98643 1.20009 0.95377 0.99017 0.99393 1.20566 0.92203 0.97300 1.16182 1.18278 0.91112 0.87172 0.94307 1.42414 1.08792 1.04772 1.85585 0.91887 0.90952 0.92414 0.82673 0.77038 0.89106 0.86275 0.90835 0.88692 0.89226 0.85749 0.77761 0.77330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 9.74 36.01 0.35 -0.63 16 2 C -0.01 -0.13 6.80 -82.32 -0.56 -0.69 16 3 N -0.42 -7.81 10.26 -9.11 -0.09 -7.90 16 4 C 0.01 0.24 9.18 -17.28 -0.16 0.09 16 5 C 0.20 3.56 5.75 -83.65 -0.48 3.08 16 6 N -0.67 -11.95 5.41 -8.23 -0.04 -11.99 16 7 C 0.02 0.53 5.96 -83.68 -0.50 0.03 16 8 C -0.12 -2.82 8.07 -39.76 -0.32 -3.14 16 9 C -0.14 -3.67 8.64 -39.27 -0.34 -4.01 16 10 C 0.10 2.55 5.57 -106.79 -0.60 1.96 16 11 C -0.46 -12.03 9.02 -37.89 -0.34 -12.37 16 12 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 13 C 0.08 1.88 5.10 -17.34 -0.09 1.79 16 14 N -0.79 -20.39 11.01 55.54 0.61 -19.78 16 15 Si 0.91 18.55 29.60 -169.99 -5.03 13.51 16 16 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 17 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 19 C -0.21 -4.92 9.74 -39.27 -0.38 -5.30 16 20 C -0.12 -2.53 9.88 -39.76 -0.39 -2.92 16 21 C -0.23 -3.43 9.98 -38.89 -0.39 -3.82 16 22 C 0.20 2.77 6.75 -83.66 -0.57 2.21 16 23 N -0.87 -8.32 8.99 32.48 0.29 -8.03 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.52 6.53 -51.93 -0.34 0.18 16 27 H 0.16 3.31 6.99 -52.49 -0.37 2.95 16 28 H 0.40 5.96 8.91 -40.82 -0.36 5.60 16 29 H 0.09 2.09 6.70 -52.48 -0.35 1.74 16 30 H 0.12 3.20 6.18 -52.49 -0.32 2.88 16 31 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 32 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 33 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 34 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.39 2.98 8.85 -40.82 -0.36 2.62 16 36 H 0.40 3.01 6.83 -40.82 -0.28 2.74 16 LS Contribution 304.44 15.07 4.59 4.59 Total: -1.00 -28.63 304.44 -8.49 -37.12 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -4.05 Total: 16.21 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -4.76 Total: -23.73 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.77 Total: -47.71 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.63 -8.49 -37.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210287862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.391 kcal (2) G-P(sol) polarization free energy of solvation -28.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds