Wall clock time and date at job start Mon Mar 30 2020 01:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31834 * 119.58446 * 2 1 4 4 C 1.31768 * 121.87692 * 179.68399 * 3 2 1 5 5 C 1.39048 * 120.81378 * 0.57456 * 4 3 2 6 6 N 1.39624 * 120.45969 * 179.70543 * 5 4 3 7 7 C 1.38810 * 120.00050 * 324.57828 * 6 5 4 8 8 C 1.39610 * 119.84553 * 331.29062 * 7 6 5 9 9 C 1.36309 * 120.15895 * 179.75990 * 8 7 6 10 10 C 1.40908 * 119.83633 * 0.52962 * 9 8 7 11 11 C 1.41106 * 120.15231 * 179.69654 * 10 9 8 12 12 H 1.07996 * 119.99997 * 204.20700 * 11 10 9 13 13 C 1.39846 * 119.99695 * 24.20431 * 11 10 9 14 14 N 1.30916 * 120.00058 * 19.25141 * 13 11 10 15 15 Si 1.86803 * 119.99884 * 199.24832 * 13 11 10 16 16 H 1.48497 * 109.46890 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.47111 * 120.00315 * 15 13 11 18 18 H 1.48502 * 109.47031 * 240.00505 * 15 13 11 19 19 C 1.40899 * 119.69405 * 359.72381 * 10 9 8 20 20 C 1.36315 * 119.84410 * 359.97438 * 19 10 9 21 21 C 1.39197 * 119.08234 * 359.43976 * 5 4 3 22 22 C 1.38966 * 119.58703 * 179.97438 * 2 1 3 23 23 N 1.39712 * 120.44611 * 0.02562 * 22 2 1 24 24 H 1.08997 * 109.47201 * 270.02846 * 1 2 3 25 25 H 1.08994 * 109.46933 * 30.02606 * 1 2 3 26 26 H 1.08998 * 109.46764 * 150.02426 * 1 2 3 27 27 H 1.08000 * 119.59475 * 180.29096 * 4 3 2 28 28 H 0.97003 * 119.99362 * 144.58217 * 6 5 4 29 29 H 1.08006 * 119.91944 * 359.97438 * 8 7 6 30 30 H 1.07995 * 120.08385 * 180.26003 * 9 8 7 31 31 H 0.97003 * 119.99791 * 179.97438 * 14 13 11 32 32 H 1.08001 * 120.08002 * 179.97438 * 19 10 9 33 33 H 1.07989 * 119.92641 * 179.97438 * 20 19 10 34 34 H 1.07993 * 120.85701 * 180.29469 * 21 5 4 35 35 H 0.96995 * 120.00120 * 180.02562 * 23 22 2 36 36 H 0.97004 * 119.99750 * 0.02615 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1579 1.1465 0.0000 4 6 3.4745 1.1992 0.0062 5 6 4.2340 0.0345 0.0010 6 7 5.6287 0.0990 0.0014 7 6 6.2768 1.1128 -0.6907 8 6 5.6781 1.6767 -1.8188 9 6 6.3066 2.6759 -2.5004 10 6 7.5687 3.1317 -2.0704 11 6 8.2282 4.1613 -2.7748 12 1 9.3029 4.2513 -2.7187 13 6 7.4900 5.0650 -3.5455 14 7 6.2064 5.2105 -3.3333 15 14 8.3356 6.0647 -4.8779 16 1 9.7788 5.7169 -4.9168 17 1 7.7177 5.7594 -6.1931 18 1 8.1826 7.5121 -4.5830 19 6 8.1694 2.5543 -0.9342 20 6 7.5267 1.5600 -0.2585 21 6 3.5846 -1.1967 0.0011 22 6 2.1931 -1.2085 0.0005 23 7 1.4953 -2.4188 0.0005 24 1 -0.3633 0.0005 1.0276 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 3.9698 2.1589 0.0107 28 1 6.1447 -0.5647 0.4854 29 1 4.7130 1.3228 -2.1502 30 1 5.8405 3.1141 -3.3704 31 1 5.6945 5.8377 -3.8677 32 1 9.1367 2.8986 -0.5994 33 1 7.9860 1.1162 0.6123 34 1 4.1462 -2.1192 0.0019 35 1 1.9807 -3.2585 0.0013 36 1 0.5252 -2.4193 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210287862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:09 Heat of formation + Delta-G solvation = 35.966475 kcal Electronic energy + Delta-G solvation = -19262.562531 eV Core-core repulsion = 16323.875572 eV Total energy + Delta-G solvation = -2938.686959 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.40691 -39.73457 -37.24921 -35.88181 -35.08060 -32.69364 -31.49141 -30.89839 -30.10850 -27.64000 -26.33800 -24.08283 -23.14384 -22.78858 -21.74772 -19.24835 -18.89016 -18.26058 -17.58420 -16.94575 -16.78248 -16.15357 -15.79714 -15.56784 -15.43976 -14.95529 -14.53271 -13.99079 -13.95521 -13.68162 -13.59399 -13.25619 -13.06706 -12.90252 -12.76373 -12.59017 -12.30789 -12.20223 -11.83107 -11.60817 -11.25528 -10.91518 -10.42700 -9.76805 -9.47265 -8.70127 -8.59938 -8.11710 -6.14709 0.34062 0.56377 1.04816 1.14441 1.39745 1.53032 1.55733 2.23052 2.53472 2.74473 3.00799 3.03032 3.71778 3.77004 3.94459 4.14826 4.33730 4.39409 4.43523 4.56976 4.74877 4.85020 4.94287 5.01933 5.06698 5.14238 5.22850 5.33405 5.38259 5.55834 5.70545 5.78990 5.92418 6.11089 6.29786 6.45115 6.55930 6.74678 6.93800 6.97709 7.01012 7.13109 7.31767 8.36871 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028552 B = 0.004253 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.442610 B = 6581.943853 C = 7267.837219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.014 4.014 3 N -0.447 5.447 4 C -0.022 4.022 5 C 0.188 3.812 6 N -0.666 5.666 7 C 0.051 3.949 8 C -0.127 4.127 9 C -0.164 4.164 10 C 0.063 3.937 11 C -0.498 4.498 12 H 0.077 0.923 13 C 0.034 3.966 14 N -0.829 5.829 15 Si 0.980 3.020 16 H -0.256 1.256 17 H -0.267 1.267 18 H -0.267 1.267 19 C -0.213 4.213 20 C -0.120 4.120 21 C -0.222 4.222 22 C 0.209 3.791 23 N -0.849 5.849 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.120 0.880 28 H 0.412 0.588 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.286 0.714 32 H 0.105 0.895 33 H 0.127 0.873 34 H 0.155 0.845 35 H 0.410 0.590 36 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.073 -13.695 4.997 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.159 4.159 3 N -0.156 5.156 4 C -0.185 4.185 5 C 0.084 3.916 6 N -0.290 5.290 7 C -0.045 4.045 8 C -0.148 4.148 9 C -0.184 4.184 10 C 0.061 3.939 11 C -0.527 4.527 12 H 0.095 0.905 13 C -0.181 4.181 14 N -0.455 5.455 15 Si 0.800 3.200 16 H -0.179 1.179 17 H -0.192 1.192 18 H -0.192 1.192 19 C -0.233 4.233 20 C -0.140 4.140 21 C -0.256 4.256 22 C 0.099 3.901 23 N -0.392 5.392 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.137 0.863 28 H 0.250 0.750 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.145 0.855 34 H 0.172 0.828 35 H 0.240 0.760 36 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -8.746 -12.669 4.863 16.144 hybrid contribution 0.923 -0.318 -0.479 1.088 sum -7.822 -12.987 4.384 15.782 Atomic orbital electron populations 1.20494 0.87181 1.03372 1.03125 1.21184 0.98080 0.86847 1.09827 1.67143 1.09412 1.29950 1.09061 1.22044 0.89236 0.97366 1.09831 1.18542 0.84608 0.93904 0.94583 1.41284 1.01798 1.30563 1.55387 1.17201 0.95079 0.96913 0.95270 1.20293 0.99167 0.99472 0.95861 1.20813 0.97922 0.98356 1.01293 1.17919 0.92314 0.92353 0.91336 1.19756 0.95193 1.11277 1.26512 0.90458 1.26744 0.95197 0.97559 0.98557 1.69948 1.09459 1.30865 1.35275 0.85201 0.79622 0.77646 0.77489 1.17913 1.19176 1.19187 1.20788 1.01859 1.02535 0.98119 1.20319 0.95279 0.98343 1.00089 1.20825 0.92853 0.97180 1.14740 1.18303 0.91000 0.88261 0.92509 1.42359 1.09599 1.03793 1.83400 0.90180 0.91806 0.89200 0.86260 0.75039 0.89417 0.88526 0.90364 0.87640 0.85546 0.82767 0.75979 0.75711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.71 9.74 71.24 0.69 -1.02 16 2 C -0.01 -0.41 6.80 42.73 0.29 -0.11 16 3 N -0.45 -16.79 10.26 -182.74 -1.87 -18.66 16 4 C -0.02 -0.87 9.18 84.90 0.78 -0.09 16 5 C 0.19 6.47 5.75 38.33 0.22 6.69 16 6 N -0.67 -22.88 5.41 -179.94 -0.97 -23.86 16 7 C 0.05 2.17 5.96 38.70 0.23 2.40 16 8 C -0.13 -6.21 8.07 22.15 0.18 -6.03 16 9 C -0.16 -8.96 8.64 22.47 0.19 -8.76 16 10 C 0.06 3.48 5.57 -21.27 -0.12 3.36 16 11 C -0.50 -27.28 9.02 23.36 0.21 -27.07 16 12 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 13 C 0.03 1.74 5.10 85.22 0.43 2.18 16 14 N -0.83 -45.21 11.01 21.81 0.24 -44.97 16 15 Si 0.98 39.25 29.60 68.60 2.03 41.28 16 16 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 17 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 18 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 19 C -0.21 -10.32 9.74 22.47 0.22 -10.10 16 20 C -0.12 -5.08 9.88 22.15 0.22 -4.86 16 21 C -0.22 -6.00 9.98 22.72 0.23 -5.77 16 22 C 0.21 5.12 6.75 38.28 0.26 5.38 16 23 N -0.85 -11.93 8.99 -51.17 -0.46 -12.39 16 24 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.09 1.22 6.53 -2.39 -0.02 1.20 16 27 H 0.12 5.50 6.99 -2.91 -0.02 5.48 16 28 H 0.41 11.35 8.91 -92.71 -0.83 10.53 16 29 H 0.09 4.26 6.70 -2.91 -0.02 4.24 16 30 H 0.10 5.61 6.18 -2.91 -0.02 5.60 16 31 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 32 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 33 H 0.13 4.40 8.06 -2.92 -0.02 4.38 16 34 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 35 H 0.41 3.96 8.85 -92.71 -0.82 3.14 16 36 H 0.41 4.01 6.83 -92.71 -0.63 3.38 16 Total: -1.00 -66.60 304.44 1.87 -64.74 By element: Atomic # 1 Polarization: 38.81 SS G_CDS: -1.13 Total: 37.67 kcal Atomic # 6 Polarization: -47.84 SS G_CDS: 4.04 Total: -43.80 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -3.07 Total: -99.88 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal Total: -66.60 1.87 -64.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210287862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.702 kcal (2) G-P(sol) polarization free energy of solvation -66.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds