Wall clock time and date at job start Mon Mar 30 2020 01:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31818 * 119.58783 * 2 1 4 4 C 1.31783 * 121.87503 * 179.97438 * 3 2 1 5 5 C 1.39006 * 120.81735 * 0.02562 * 4 3 2 6 6 N 1.39735 * 120.45217 * 179.97438 * 5 4 3 7 7 C 1.39719 * 119.99915 * 211.29387 * 6 5 4 8 8 C 1.39352 * 119.95395 * 206.41248 * 7 6 5 9 9 C 1.38473 * 120.42233 * 179.76353 * 8 7 6 10 10 C 1.37695 * 120.32644 * 0.51134 * 9 8 7 11 11 C 1.40755 * 119.89610 * 359.74635 * 10 9 8 12 12 C 1.41403 * 120.20704 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00054 * 205.47690 * 12 11 10 14 14 C 1.39929 * 120.00011 * 25.48050 * 12 11 10 15 15 N 1.30831 * 119.99926 * 16.43364 * 14 12 11 16 16 Si 1.86800 * 120.00182 * 196.43377 * 14 12 11 17 17 H 1.48501 * 109.47350 * 89.99922 * 16 14 12 18 18 H 1.48506 * 109.47147 * 210.00179 * 16 14 12 19 19 H 1.48500 * 109.47027 * 329.99946 * 16 14 12 20 20 C 1.38294 * 119.95168 * 26.68687 * 7 6 5 21 21 C 1.39153 * 119.08889 * 359.68645 * 5 4 3 22 22 C 1.38950 * 119.59046 * 179.97438 * 2 1 3 23 23 N 1.39706 * 120.45173 * 0.02562 * 22 2 1 24 24 H 1.09000 * 109.47511 * 270.01543 * 1 2 3 25 25 H 1.09005 * 109.47524 * 30.01763 * 1 2 3 26 26 H 1.09002 * 109.47258 * 150.02072 * 1 2 3 27 27 H 1.08002 * 119.59130 * 180.02562 * 4 3 2 28 28 H 0.96997 * 120.00635 * 31.29359 * 6 5 4 29 29 H 1.08004 * 119.78964 * 0.02562 * 8 7 6 30 30 H 1.08002 * 119.83543 * 180.23769 * 9 8 7 31 31 H 1.07998 * 120.04990 * 179.72178 * 10 9 8 32 32 H 0.96998 * 119.99951 * 179.97438 * 15 14 12 33 33 H 1.07993 * 120.16739 * 359.95730 * 20 7 6 34 34 H 1.07998 * 120.84692 * 180.29263 * 21 5 4 35 35 H 0.96998 * 120.00146 * 359.97438 * 23 22 2 36 36 H 0.97000 * 120.00059 * 179.72392 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1578 1.1463 0.0000 4 6 3.4746 1.1989 0.0005 5 6 4.2338 0.0345 0.0005 6 7 5.6296 0.0991 0.0005 7 6 6.3753 -0.9014 -0.6280 8 6 7.6737 -1.1735 -0.2012 9 6 8.4196 -2.1663 -0.8139 10 6 7.8897 -2.8889 -1.8594 11 6 6.5816 -2.6218 -2.3050 12 6 6.0311 -3.3595 -3.3785 13 1 5.2482 -2.9283 -3.9847 14 6 6.5007 -4.6482 -3.6552 15 7 7.1987 -5.2967 -2.7586 16 14 6.1310 -5.4428 -5.3049 17 1 7.2119 -5.1110 -6.2676 18 1 6.0520 -6.9163 -5.1380 19 1 4.8351 -4.9329 -5.8206 20 6 5.8259 -1.6165 -1.6765 21 6 3.5847 -1.1964 0.0067 22 6 2.1931 -1.2083 0.0005 23 7 1.4954 -2.4187 0.0005 24 1 -0.3634 0.0003 1.0276 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 3.9700 2.1586 0.0009 28 1 6.0810 0.8386 0.4368 29 1 8.0994 -0.6093 0.6155 30 1 9.4236 -2.3718 -0.4730 31 1 8.4771 -3.6591 -2.3370 32 1 7.5239 -6.1902 -2.9503 33 1 4.8211 -1.4041 -2.0106 34 1 4.1465 -2.1187 0.0116 35 1 0.5254 -2.4194 0.0005 36 1 1.9810 -3.2584 -0.0031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210289523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:11 Heat of formation + Delta-G solvation = 50.922745 kcal Electronic energy + Delta-G solvation = -19561.945468 eV Core-core repulsion = 16623.907062 eV Total energy + Delta-G solvation = -2938.038406 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.10264 -37.97879 -35.66138 -34.65070 -33.40208 -31.29647 -29.94964 -29.26153 -28.28047 -25.95018 -25.17742 -22.82690 -21.72489 -20.77358 -20.23439 -17.89651 -17.12378 -16.96071 -15.66386 -15.56142 -15.09553 -14.82322 -14.44875 -14.38033 -14.06928 -13.17665 -13.00628 -12.63657 -12.53695 -12.24574 -12.03547 -11.83511 -11.69733 -11.41555 -11.18028 -11.00079 -10.74279 -10.56104 -10.14716 -9.98152 -9.50205 -9.22205 -9.16014 -8.23514 -7.51905 -7.36146 -6.80710 -6.42813 -4.42897 1.67745 1.87753 2.74727 3.03159 3.05760 3.08031 3.20067 3.83297 3.90867 4.11176 4.28383 4.60106 4.84536 5.14601 5.45926 5.52559 5.65998 5.71829 5.75685 5.80116 6.08743 6.22494 6.35737 6.39318 6.64564 6.70561 6.92779 6.99286 7.05718 7.14755 7.22582 7.58303 7.67879 7.80003 7.89093 7.97675 8.08510 8.20031 8.42561 8.50519 8.63039 8.86657 8.93166 10.14778 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017600 B = 0.005804 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.568249 B = 4823.192332 C = 5983.561815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.003 4.003 3 N -0.423 5.423 4 C -0.015 4.015 5 C 0.198 3.802 6 N -0.682 5.682 7 C 0.184 3.816 8 C -0.275 4.275 9 C -0.083 4.083 10 C -0.180 4.180 11 C 0.131 3.869 12 C -0.461 4.461 13 H 0.076 0.924 14 C 0.077 3.923 15 N -0.793 5.793 16 Si 0.907 3.093 17 H -0.267 1.267 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.256 4.256 21 C -0.197 4.197 22 C 0.203 3.797 23 N -0.869 5.869 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.146 0.854 28 H 0.401 0.599 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.280 0.720 33 H 0.097 0.903 34 H 0.141 0.859 35 H 0.396 0.604 36 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.323 3.992 4.257 9.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.147 4.147 3 N -0.131 5.131 4 C -0.179 4.179 5 C 0.094 3.906 6 N -0.304 5.304 7 C 0.090 3.910 8 C -0.297 4.297 9 C -0.103 4.103 10 C -0.200 4.200 11 C 0.127 3.873 12 C -0.490 4.490 13 H 0.095 0.905 14 C -0.140 4.140 15 N -0.418 5.418 16 Si 0.731 3.269 17 H -0.192 1.192 18 H -0.203 1.203 19 H -0.187 1.187 20 C -0.279 4.279 21 C -0.231 4.231 22 C 0.095 3.905 23 N -0.410 5.410 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.163 0.837 28 H 0.236 0.764 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.136 0.864 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.159 0.841 35 H 0.226 0.774 36 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -7.677 4.460 4.240 9.839 hybrid contribution 0.543 -1.352 -0.535 1.552 sum -7.134 3.108 3.705 8.619 Atomic orbital electron populations 1.20363 0.89875 1.02242 1.01691 1.20399 0.96083 0.87002 1.11254 1.67084 1.09192 1.28125 1.08661 1.22032 0.89019 0.96602 1.10232 1.18517 0.84480 0.93743 0.93852 1.42082 1.01774 1.26936 1.59595 1.17463 0.91048 0.89968 0.92520 1.19994 0.95974 1.06771 1.06964 1.20473 0.97514 0.95529 0.96740 1.21313 0.96094 1.02568 1.00036 1.17408 0.90409 0.89214 0.90223 1.19559 1.18462 0.98652 1.12369 0.90546 1.25886 0.93217 0.97279 0.97657 1.69830 1.27489 1.11722 1.32789 0.86331 0.80069 0.78145 0.82306 1.19220 1.20310 1.18650 1.20766 1.00390 1.06379 1.00333 1.20942 0.92021 0.98694 1.11428 1.18358 0.91256 0.87261 0.93669 1.42481 1.08748 1.05129 1.84612 0.91841 0.91093 0.92143 0.83691 0.76406 0.89345 0.89139 0.86421 0.90894 0.88470 0.84078 0.77415 0.77047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 9.74 36.00 0.35 -0.63 16 2 C 0.00 -0.04 6.80 -82.34 -0.56 -0.60 16 3 N -0.42 -7.16 10.26 -9.13 -0.09 -7.25 16 4 C -0.01 -0.25 11.11 -17.29 -0.19 -0.44 16 5 C 0.20 3.56 5.92 -83.63 -0.49 3.07 16 6 N -0.68 -12.34 5.47 -8.38 -0.05 -12.39 16 7 C 0.18 4.01 6.05 -83.83 -0.51 3.50 16 8 C -0.28 -5.95 9.95 -39.08 -0.39 -6.34 16 9 C -0.08 -1.91 10.01 -39.69 -0.40 -2.31 16 10 C -0.18 -4.58 8.69 -38.83 -0.34 -4.92 16 11 C 0.13 3.41 5.57 -106.85 -0.59 2.82 16 12 C -0.46 -12.04 9.05 -37.75 -0.34 -12.39 16 13 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 14 C 0.08 1.90 5.16 -17.34 -0.09 1.82 16 15 N -0.79 -20.02 10.94 55.55 0.61 -19.41 16 16 Si 0.91 18.43 29.59 -169.99 -5.03 13.40 16 17 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 18 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 19 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 20 C -0.26 -6.19 7.66 -38.67 -0.30 -6.48 16 21 C -0.20 -3.61 7.77 -38.90 -0.30 -3.91 16 22 C 0.20 3.24 6.75 -83.66 -0.57 2.67 16 23 N -0.87 -10.87 8.99 32.47 0.29 -10.57 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.59 6.53 -51.93 -0.34 0.25 16 27 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 28 H 0.40 6.09 8.90 -40.82 -0.36 5.73 16 29 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 30 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.12 3.09 6.17 -52.49 -0.32 2.77 16 32 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 33 H 0.10 2.37 6.40 -52.49 -0.34 2.03 16 34 H 0.14 2.86 6.72 -52.49 -0.35 2.50 16 35 H 0.40 3.87 6.83 -40.82 -0.28 3.59 16 36 H 0.40 4.84 8.85 -40.82 -0.36 4.48 16 LS Contribution 303.85 15.07 4.58 4.58 Total: -1.00 -28.40 303.85 -8.43 -36.83 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -4.02 Total: 18.96 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -4.72 Total: -24.15 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.76 Total: -49.62 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.40 -8.43 -36.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210289523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.751 kcal (2) G-P(sol) polarization free energy of solvation -28.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds