Wall clock time and date at job start Mon Mar 30 2020 01:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31818 * 119.58783 * 2 1 4 4 C 1.31783 * 121.87503 * 179.97438 * 3 2 1 5 5 C 1.39006 * 120.81735 * 0.02562 * 4 3 2 6 6 N 1.39735 * 120.45217 * 179.97438 * 5 4 3 7 7 C 1.39719 * 119.99915 * 211.29387 * 6 5 4 8 8 C 1.39352 * 119.95395 * 206.41248 * 7 6 5 9 9 C 1.38473 * 120.42233 * 179.76353 * 8 7 6 10 10 C 1.37695 * 120.32644 * 0.51134 * 9 8 7 11 11 C 1.40755 * 119.89610 * 359.74635 * 10 9 8 12 12 C 1.41403 * 120.20704 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00054 * 205.47690 * 12 11 10 14 14 C 1.39929 * 120.00011 * 25.48050 * 12 11 10 15 15 N 1.30831 * 119.99926 * 16.43364 * 14 12 11 16 16 Si 1.86800 * 120.00182 * 196.43377 * 14 12 11 17 17 H 1.48501 * 109.47350 * 89.99922 * 16 14 12 18 18 H 1.48506 * 109.47147 * 210.00179 * 16 14 12 19 19 H 1.48500 * 109.47027 * 329.99946 * 16 14 12 20 20 C 1.38294 * 119.95168 * 26.68687 * 7 6 5 21 21 C 1.39153 * 119.08889 * 359.68645 * 5 4 3 22 22 C 1.38950 * 119.59046 * 179.97438 * 2 1 3 23 23 N 1.39706 * 120.45173 * 0.02562 * 22 2 1 24 24 H 1.09000 * 109.47511 * 270.01543 * 1 2 3 25 25 H 1.09005 * 109.47524 * 30.01763 * 1 2 3 26 26 H 1.09002 * 109.47258 * 150.02072 * 1 2 3 27 27 H 1.08002 * 119.59130 * 180.02562 * 4 3 2 28 28 H 0.96997 * 120.00635 * 31.29359 * 6 5 4 29 29 H 1.08004 * 119.78964 * 0.02562 * 8 7 6 30 30 H 1.08002 * 119.83543 * 180.23769 * 9 8 7 31 31 H 1.07998 * 120.04990 * 179.72178 * 10 9 8 32 32 H 0.96998 * 119.99951 * 179.97438 * 15 14 12 33 33 H 1.07993 * 120.16739 * 359.95730 * 20 7 6 34 34 H 1.07998 * 120.84692 * 180.29263 * 21 5 4 35 35 H 0.96998 * 120.00146 * 359.97438 * 23 22 2 36 36 H 0.97000 * 120.00059 * 179.72392 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1578 1.1463 0.0000 4 6 3.4746 1.1989 0.0005 5 6 4.2338 0.0345 0.0005 6 7 5.6296 0.0991 0.0005 7 6 6.3753 -0.9014 -0.6280 8 6 7.6737 -1.1735 -0.2012 9 6 8.4196 -2.1663 -0.8139 10 6 7.8897 -2.8889 -1.8594 11 6 6.5816 -2.6218 -2.3050 12 6 6.0311 -3.3595 -3.3785 13 1 5.2482 -2.9283 -3.9847 14 6 6.5007 -4.6482 -3.6552 15 7 7.1987 -5.2967 -2.7586 16 14 6.1310 -5.4428 -5.3049 17 1 7.2119 -5.1110 -6.2676 18 1 6.0520 -6.9163 -5.1380 19 1 4.8351 -4.9329 -5.8206 20 6 5.8259 -1.6165 -1.6765 21 6 3.5847 -1.1964 0.0067 22 6 2.1931 -1.2083 0.0005 23 7 1.4954 -2.4187 0.0005 24 1 -0.3634 0.0003 1.0276 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 3.9700 2.1586 0.0009 28 1 6.0810 0.8386 0.4368 29 1 8.0994 -0.6093 0.6155 30 1 9.4236 -2.3718 -0.4730 31 1 8.4771 -3.6591 -2.3370 32 1 7.5239 -6.1902 -2.9503 33 1 4.8211 -1.4041 -2.0106 34 1 4.1465 -2.1187 0.0116 35 1 0.5254 -2.4194 0.0005 36 1 1.9810 -3.2584 -0.0031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210289523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:11 Heat of formation + Delta-G solvation = 33.500144 kcal Electronic energy + Delta-G solvation = -19562.700969 eV Core-core repulsion = 16623.907062 eV Total energy + Delta-G solvation = -2938.793907 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.43598 -39.65540 -37.19872 -35.95892 -35.14350 -32.65218 -31.72675 -30.53319 -29.88033 -27.46843 -26.85458 -24.16747 -23.18940 -22.54112 -21.84202 -19.52622 -18.53901 -18.33538 -17.35321 -16.93735 -16.54856 -16.46741 -15.95591 -15.73728 -15.34478 -14.83923 -14.68187 -14.15869 -13.98841 -13.76583 -13.33590 -13.16747 -12.98722 -12.85819 -12.82340 -12.58476 -12.26192 -12.18915 -11.79304 -11.71842 -11.31820 -11.01634 -10.49480 -9.81182 -9.39045 -8.66030 -8.59572 -8.01087 -6.37787 0.31189 0.54949 0.97964 1.25439 1.37303 1.49364 1.53141 2.19719 2.45378 2.73022 2.92911 3.01355 3.70586 3.76563 3.94469 4.13827 4.26912 4.42446 4.53945 4.65084 4.77623 4.86496 4.99533 5.04438 5.09420 5.10853 5.21716 5.30326 5.33214 5.42862 5.70711 5.89134 5.99330 6.12000 6.22790 6.38529 6.50749 6.70977 6.91656 6.93150 6.99145 7.06224 7.21776 8.33202 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017600 B = 0.005804 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.568249 B = 4823.192332 C = 5983.561815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.003 4.003 3 N -0.434 5.434 4 C -0.016 4.016 5 C 0.181 3.819 6 N -0.674 5.674 7 C 0.195 3.805 8 C -0.273 4.273 9 C -0.083 4.083 10 C -0.209 4.209 11 C 0.104 3.896 12 C -0.498 4.498 13 H 0.067 0.933 14 C 0.040 3.960 15 N -0.822 5.822 16 Si 0.978 3.022 17 H -0.262 1.262 18 H -0.265 1.265 19 H -0.262 1.262 20 C -0.269 4.269 21 C -0.218 4.218 22 C 0.201 3.799 23 N -0.855 5.855 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.168 0.832 28 H 0.416 0.584 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.288 0.712 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.412 0.588 36 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.480 4.578 4.708 10.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.149 4.149 3 N -0.142 5.142 4 C -0.179 4.179 5 C 0.078 3.922 6 N -0.298 5.298 7 C 0.099 3.901 8 C -0.295 4.295 9 C -0.102 4.102 10 C -0.230 4.230 11 C 0.101 3.899 12 C -0.528 4.528 13 H 0.085 0.915 14 C -0.175 4.175 15 N -0.448 5.448 16 Si 0.799 3.201 17 H -0.187 1.187 18 H -0.190 1.190 19 H -0.186 1.186 20 C -0.291 4.291 21 C -0.252 4.252 22 C 0.091 3.909 23 N -0.396 5.396 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.185 0.815 28 H 0.254 0.746 29 H 0.139 0.861 30 H 0.134 0.866 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.132 0.868 35 H 0.244 0.756 36 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.868 5.064 4.723 11.251 hybrid contribution 0.798 -1.462 -0.545 1.753 sum -8.070 3.602 4.178 9.775 Atomic orbital electron populations 1.20491 0.86852 1.03507 1.03247 1.21071 0.98074 0.86370 1.09359 1.67195 1.09230 1.28702 1.09114 1.22331 0.89086 0.96963 1.09564 1.18649 0.84322 0.94192 0.95031 1.41898 1.01885 1.26566 1.59443 1.17496 0.91366 0.89795 0.91462 1.20344 0.95668 1.06255 1.07185 1.20779 0.98723 0.94998 0.95652 1.21250 0.96134 1.03695 1.01877 1.17720 0.91138 0.90133 0.90915 1.19728 1.19563 1.00005 1.13480 0.91511 1.26655 0.92699 0.97165 1.00968 1.69876 1.28124 1.12316 1.34441 0.85270 0.79756 0.77567 0.77523 1.18666 1.18960 1.18630 1.20700 0.99943 1.07049 1.01439 1.20885 0.93230 0.97936 1.13191 1.18445 0.90608 0.88701 0.93150 1.42448 1.09581 1.04212 1.83380 0.90006 0.90693 0.90084 0.81488 0.74586 0.86077 0.86583 0.88086 0.90129 0.89632 0.86765 0.75572 0.76774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.70 9.74 71.23 0.69 -1.00 16 2 C 0.00 -0.10 6.80 42.73 0.29 0.19 16 3 N -0.43 -13.97 10.26 -182.79 -1.87 -15.85 16 4 C -0.02 -0.53 11.11 84.88 0.94 0.42 16 5 C 0.18 6.43 5.92 38.29 0.23 6.66 16 6 N -0.67 -23.85 5.47 -180.41 -0.99 -24.84 16 7 C 0.19 8.48 6.05 38.17 0.23 8.71 16 8 C -0.27 -11.47 9.95 22.59 0.22 -11.25 16 9 C -0.08 -3.76 10.01 22.20 0.22 -3.54 16 10 C -0.21 -10.99 8.69 22.76 0.20 -10.79 16 11 C 0.10 5.66 5.57 -21.31 -0.12 5.54 16 12 C -0.50 -27.23 9.05 23.46 0.21 -27.02 16 13 H 0.07 3.62 7.90 -2.91 -0.02 3.59 16 14 C 0.04 2.03 5.16 85.25 0.44 2.47 16 15 N -0.82 -42.65 10.94 21.82 0.24 -42.41 16 16 Si 0.98 38.34 29.59 68.60 2.03 40.37 16 17 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 18 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 19 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 20 C -0.27 -13.41 7.66 22.86 0.18 -13.24 16 21 C -0.22 -8.09 7.77 22.71 0.18 -7.91 16 22 C 0.20 6.25 6.75 38.28 0.26 6.50 16 23 N -0.85 -20.28 8.99 -51.17 -0.46 -20.74 16 24 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 25 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 26 H 0.08 1.30 6.53 -2.39 -0.02 1.28 16 27 H 0.17 4.43 8.06 -2.91 -0.02 4.41 16 28 H 0.42 11.91 8.90 -92.71 -0.83 11.08 16 29 H 0.12 4.28 8.06 -2.91 -0.02 4.25 16 30 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 31 H 0.10 5.54 6.17 -2.91 -0.02 5.52 16 32 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 33 H 0.09 4.37 6.40 -2.91 -0.02 4.35 16 34 H 0.11 4.83 6.72 -2.91 -0.02 4.81 16 35 H 0.41 7.06 6.83 -92.71 -0.63 6.42 16 36 H 0.40 9.54 8.85 -92.71 -0.82 8.72 16 Total: -1.00 -62.92 303.85 1.99 -60.94 By element: Atomic # 1 Polarization: 47.92 SS G_CDS: -1.13 Total: 46.79 kcal Atomic # 6 Polarization: -48.43 SS G_CDS: 4.17 Total: -44.26 kcal Atomic # 7 Polarization: -100.75 SS G_CDS: -3.08 Total: -103.84 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -62.92 1.99 -60.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210289523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.436 kcal (2) G-P(sol) polarization free energy of solvation -62.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds