Wall clock time and date at job start Mon Mar 30 2020 01:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31830 * 119.58126 * 2 1 4 4 C 1.31765 * 121.87508 * 179.97438 * 3 2 1 5 5 C 1.39052 * 120.81365 * 0.02562 * 4 3 2 6 6 N 1.39616 * 120.45657 * 179.97438 * 5 4 3 7 7 C 1.38677 * 120.00527 * 4.33929 * 6 5 4 8 8 C 1.38817 * 120.29767 * 250.03644 * 7 6 5 9 9 C 1.38122 * 120.01701 * 180.27204 * 8 7 6 10 10 C 1.38920 * 120.63810 * 359.71708 * 9 8 7 11 11 C 1.36433 * 120.60620 * 0.02562 * 10 9 8 12 12 C 1.40737 * 119.95219 * 359.97438 * 11 10 9 13 13 C 1.41007 * 120.30875 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00125 * 203.26322 * 13 12 11 15 15 C 1.39915 * 119.99866 * 23.26452 * 13 12 11 16 16 N 1.30888 * 119.99839 * 34.18533 * 15 13 12 17 17 Si 1.86806 * 120.00036 * 214.17876 * 15 13 12 18 18 H 1.48501 * 109.47122 * 180.02562 * 17 15 13 19 19 H 1.48504 * 109.47022 * 300.00323 * 17 15 13 20 20 H 1.48502 * 109.46945 * 60.00000 * 17 15 13 21 21 C 1.39199 * 119.08190 * 0.25263 * 5 4 3 22 22 C 1.38963 * 119.58362 * 179.97438 * 2 1 3 23 23 N 1.39705 * 120.44923 * 0.02562 * 22 2 1 24 24 H 1.09002 * 109.47218 * 90.00382 * 1 2 3 25 25 H 1.09006 * 109.47124 * 209.99938 * 1 2 3 26 26 H 1.09002 * 109.47427 * 330.00154 * 1 2 3 27 27 H 1.08005 * 119.59570 * 179.97438 * 4 3 2 28 28 H 0.97003 * 120.00099 * 184.33163 * 6 5 4 29 29 H 1.08000 * 119.98911 * 359.97376 * 8 7 6 30 30 H 1.08007 * 119.67639 * 179.73958 * 9 8 7 31 31 H 1.08001 * 119.69766 * 180.02562 * 10 9 8 32 32 H 1.07997 * 120.01844 * 180.02562 * 11 10 9 33 33 H 0.96999 * 120.00449 * 3.93494 * 16 15 13 34 34 H 1.07997 * 120.85023 * 179.72687 * 21 5 4 35 35 H 0.97002 * 120.00427 * 359.97438 * 23 22 2 36 36 H 0.97006 * 119.99736 * 179.97438 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1578 1.1465 0.0000 4 6 3.4744 1.1992 0.0005 5 6 4.2339 0.0344 0.0005 6 7 5.6286 0.0990 0.0005 7 6 6.2660 1.3273 0.0914 8 6 6.9473 1.8452 -1.0016 9 6 7.5849 3.0665 -0.9029 10 6 7.5479 3.7908 0.2819 11 6 6.8814 3.3085 1.3703 12 6 6.2230 2.0668 1.2978 13 6 5.5315 1.5615 2.4179 14 1 5.3551 0.5000 2.5100 15 6 5.0737 2.4353 3.4101 16 7 4.6617 3.6347 3.0864 17 14 5.0503 1.8901 5.1966 18 1 4.5246 2.9910 6.0434 19 1 4.1775 0.6970 5.3387 20 1 6.4296 1.5485 5.6280 21 6 3.5845 -1.1968 -0.0054 22 6 2.1931 -1.2085 0.0005 23 7 1.4953 -2.4188 0.0005 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 3.9698 2.1589 0.0001 28 1 6.1518 -0.7153 -0.0629 29 1 6.9830 1.2908 -1.9277 30 1 8.1169 3.4624 -1.7554 31 1 8.0514 4.7444 0.3421 32 1 6.8584 3.8797 2.2866 33 1 4.6198 3.8980 2.1538 34 1 4.1462 -2.1191 -0.0099 35 1 0.5252 -2.4194 0.0005 36 1 1.9808 -3.2585 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210290572.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:13 Heat of formation + Delta-G solvation = 47.640210 kcal Electronic energy + Delta-G solvation = -20111.880244 eV Core-core repulsion = 17173.699497 eV Total energy + Delta-G solvation = -2938.180747 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.76495 -38.08925 -35.34107 -34.31048 -33.91562 -31.24129 -29.50083 -29.35478 -27.97083 -25.89810 -24.82670 -22.62917 -21.38577 -21.06321 -20.10437 -17.96366 -17.52444 -16.66841 -15.73843 -15.27696 -14.76998 -14.60256 -14.43396 -14.08501 -13.92955 -13.78180 -12.81352 -12.39405 -12.34688 -12.16047 -11.97593 -11.80900 -11.53606 -11.24816 -10.98296 -10.87506 -10.69108 -10.44162 -10.29798 -9.85709 -9.46829 -8.91299 -8.80439 -7.81010 -7.71094 -7.46855 -7.28646 -6.48019 -4.46218 2.15589 2.19673 2.70992 2.77980 3.13336 3.24861 3.33543 3.97029 4.02970 4.39640 4.47752 4.67426 5.23946 5.35158 5.38232 5.73073 5.81932 5.95414 6.01156 6.06369 6.11469 6.20713 6.30344 6.49495 6.60659 6.82361 6.87714 7.02335 7.21205 7.30960 7.47258 7.65258 7.72609 7.75550 7.88828 7.94916 8.07153 8.12506 8.38017 8.46412 8.75230 8.90997 8.99346 9.91719 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014784 B = 0.007948 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.513626 B = 3521.977692 C = 4606.371377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.029 4.029 3 N -0.415 5.415 4 C 0.020 3.980 5 C 0.232 3.768 6 N -0.652 5.652 7 C -0.017 4.017 8 C -0.070 4.070 9 C -0.260 4.260 10 C -0.079 4.079 11 C -0.214 4.214 12 C 0.098 3.902 13 C -0.497 4.497 14 H 0.077 0.923 15 C 0.046 3.954 16 N -0.767 5.767 17 Si 1.057 2.943 18 H -0.272 1.272 19 H -0.276 1.276 20 H -0.273 1.273 21 C -0.253 4.253 22 C 0.204 3.796 23 N -0.877 5.877 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.150 0.850 28 H 0.389 0.611 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.301 0.699 34 H 0.119 0.881 35 H 0.395 0.605 36 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.701 -8.366 -2.963 9.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.172 4.172 3 N -0.123 5.123 4 C -0.147 4.147 5 C 0.124 3.876 6 N -0.271 5.271 7 C -0.110 4.110 8 C -0.090 4.090 9 C -0.280 4.280 10 C -0.098 4.098 11 C -0.233 4.233 12 C 0.093 3.907 13 C -0.523 4.523 14 H 0.095 0.905 15 C -0.180 4.180 16 N -0.387 5.387 17 Si 0.880 3.120 18 H -0.197 1.197 19 H -0.201 1.201 20 H -0.199 1.199 21 C -0.288 4.288 22 C 0.098 3.902 23 N -0.418 5.418 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.167 0.833 28 H 0.223 0.777 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.137 0.863 35 H 0.224 0.776 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.489 -6.792 -1.433 8.267 hybrid contribution 1.068 -1.991 -1.554 2.742 sum -3.421 -8.784 -2.986 9.888 Atomic orbital electron populations 1.20286 0.90446 1.01765 1.01149 1.20277 0.95844 0.87106 1.13937 1.67128 1.09698 1.27854 1.07612 1.22034 0.88014 0.97394 1.07265 1.18680 0.85062 0.93595 0.90305 1.41114 1.01370 1.06781 1.77879 1.17155 1.09004 0.91285 0.93606 1.20708 0.97718 0.95093 0.95501 1.20096 1.11682 0.98059 0.98156 1.20373 0.98079 0.97568 0.93760 1.20753 1.04929 0.99345 0.98305 1.17727 0.90973 0.91379 0.90600 1.20355 1.31663 0.97023 1.03261 0.90475 1.26999 0.91230 0.92978 1.06833 1.70492 1.23880 1.19376 1.24963 0.83752 0.77991 0.76883 0.73367 1.19709 1.20123 1.19879 1.20200 0.92263 0.96626 1.19755 1.18161 0.91000 0.86955 0.94094 1.42371 1.08595 1.04780 1.86057 0.92386 0.92732 0.91308 0.83259 0.77667 0.89213 0.89252 0.89321 0.87904 0.88541 0.86290 0.77554 0.78035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 9.74 36.01 0.35 -0.78 16 2 C -0.03 -0.53 6.80 -82.32 -0.56 -1.09 16 3 N -0.41 -9.08 10.26 -9.11 -0.09 -9.17 16 4 C 0.02 0.45 9.65 -17.28 -0.17 0.28 16 5 C 0.23 4.81 5.81 -83.65 -0.49 4.32 16 6 N -0.65 -13.22 4.79 -7.96 -0.04 -13.26 16 7 C -0.02 -0.39 4.85 -83.28 -0.40 -0.79 16 8 C -0.07 -1.52 9.96 -39.41 -0.39 -1.91 16 9 C -0.26 -5.59 10.03 -39.37 -0.40 -5.98 16 10 C -0.08 -1.77 9.96 -39.98 -0.40 -2.17 16 11 C -0.21 -5.22 8.16 -39.29 -0.32 -5.54 16 12 C 0.10 2.43 4.47 -106.64 -0.48 1.95 16 13 C -0.50 -12.57 7.36 -37.91 -0.28 -12.85 16 14 H 0.08 2.00 7.47 -52.49 -0.39 1.61 16 15 C 0.05 1.13 4.71 -17.33 -0.08 1.05 16 16 N -0.77 -19.79 12.44 55.55 0.69 -19.09 16 17 Si 1.06 21.63 30.04 -169.99 -5.11 16.52 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 C -0.25 -4.53 9.91 -38.89 -0.39 -4.92 16 22 C 0.20 3.43 6.75 -83.66 -0.57 2.87 16 23 N -0.88 -10.44 8.99 32.47 0.29 -10.15 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.63 6.53 -51.93 -0.34 0.29 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.15 3.78 6.51 -52.48 -0.34 3.43 16 28 H 0.39 6.87 8.85 -40.82 -0.36 6.51 16 29 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 31 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.10 2.59 6.68 -52.49 -0.35 2.24 16 33 H 0.30 8.02 7.26 -40.82 -0.30 7.72 16 34 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.40 3.91 6.83 -40.82 -0.28 3.63 16 36 H 0.39 3.83 8.85 -40.82 -0.36 3.47 16 LS Contribution 303.50 15.07 4.57 4.57 Total: -1.00 -27.89 303.50 -8.30 -36.18 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -4.05 Total: 19.95 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -4.56 Total: -25.55 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.85 Total: -51.67 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.11 Total: 16.52 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.89 -8.30 -36.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210290572.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.823 kcal (2) G-P(sol) polarization free energy of solvation -27.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds