Wall clock time and date at job start Mon Mar 30 2020 01:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31830 * 119.58126 * 2 1 4 4 C 1.31765 * 121.87508 * 179.97438 * 3 2 1 5 5 C 1.39052 * 120.81365 * 0.02562 * 4 3 2 6 6 N 1.39616 * 120.45657 * 179.97438 * 5 4 3 7 7 C 1.38677 * 120.00527 * 4.33929 * 6 5 4 8 8 C 1.38817 * 120.29767 * 250.03644 * 7 6 5 9 9 C 1.38122 * 120.01701 * 180.27204 * 8 7 6 10 10 C 1.38920 * 120.63810 * 359.71708 * 9 8 7 11 11 C 1.36433 * 120.60620 * 0.02562 * 10 9 8 12 12 C 1.40737 * 119.95219 * 359.97438 * 11 10 9 13 13 C 1.41007 * 120.30875 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00125 * 203.26322 * 13 12 11 15 15 C 1.39915 * 119.99866 * 23.26452 * 13 12 11 16 16 N 1.30888 * 119.99839 * 34.18533 * 15 13 12 17 17 Si 1.86806 * 120.00036 * 214.17876 * 15 13 12 18 18 H 1.48501 * 109.47122 * 180.02562 * 17 15 13 19 19 H 1.48504 * 109.47022 * 300.00323 * 17 15 13 20 20 H 1.48502 * 109.46945 * 60.00000 * 17 15 13 21 21 C 1.39199 * 119.08190 * 0.25263 * 5 4 3 22 22 C 1.38963 * 119.58362 * 179.97438 * 2 1 3 23 23 N 1.39705 * 120.44923 * 0.02562 * 22 2 1 24 24 H 1.09002 * 109.47218 * 90.00382 * 1 2 3 25 25 H 1.09006 * 109.47124 * 209.99938 * 1 2 3 26 26 H 1.09002 * 109.47427 * 330.00154 * 1 2 3 27 27 H 1.08005 * 119.59570 * 179.97438 * 4 3 2 28 28 H 0.97003 * 120.00099 * 184.33163 * 6 5 4 29 29 H 1.08000 * 119.98911 * 359.97376 * 8 7 6 30 30 H 1.08007 * 119.67639 * 179.73958 * 9 8 7 31 31 H 1.08001 * 119.69766 * 180.02562 * 10 9 8 32 32 H 1.07997 * 120.01844 * 180.02562 * 11 10 9 33 33 H 0.96999 * 120.00449 * 3.93494 * 16 15 13 34 34 H 1.07997 * 120.85023 * 179.72687 * 21 5 4 35 35 H 0.97002 * 120.00427 * 359.97438 * 23 22 2 36 36 H 0.97006 * 119.99736 * 179.97438 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1578 1.1465 0.0000 4 6 3.4744 1.1992 0.0005 5 6 4.2339 0.0344 0.0005 6 7 5.6286 0.0990 0.0005 7 6 6.2660 1.3273 0.0914 8 6 6.9473 1.8452 -1.0016 9 6 7.5849 3.0665 -0.9029 10 6 7.5479 3.7908 0.2819 11 6 6.8814 3.3085 1.3703 12 6 6.2230 2.0668 1.2978 13 6 5.5315 1.5615 2.4179 14 1 5.3551 0.5000 2.5100 15 6 5.0737 2.4353 3.4101 16 7 4.6617 3.6347 3.0864 17 14 5.0503 1.8901 5.1966 18 1 4.5246 2.9910 6.0434 19 1 4.1775 0.6970 5.3387 20 1 6.4296 1.5485 5.6280 21 6 3.5845 -1.1968 -0.0054 22 6 2.1931 -1.2085 0.0005 23 7 1.4953 -2.4188 0.0005 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 3.9698 2.1589 0.0001 28 1 6.1518 -0.7153 -0.0629 29 1 6.9830 1.2908 -1.9277 30 1 8.1169 3.4624 -1.7554 31 1 8.0514 4.7444 0.3421 32 1 6.8584 3.8797 2.2866 33 1 4.6198 3.8980 2.1538 34 1 4.1462 -2.1191 -0.0099 35 1 0.5252 -2.4194 0.0005 36 1 1.9808 -3.2585 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210290572.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:13 Heat of formation + Delta-G solvation = 30.237740 kcal Electronic energy + Delta-G solvation = -20112.634872 eV Core-core repulsion = 17173.699497 eV Total energy + Delta-G solvation = -2938.935375 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.27593 -39.79377 -36.87939 -35.83853 -35.61370 -32.71505 -31.28166 -30.77808 -29.56124 -27.42507 -26.60090 -24.11366 -22.94184 -22.85021 -21.74878 -19.78446 -18.90787 -18.16845 -17.22167 -16.75332 -16.49097 -16.27144 -15.91505 -15.67186 -15.38024 -15.29367 -14.51790 -14.15079 -13.82363 -13.80900 -13.42906 -13.22904 -13.00912 -12.76364 -12.66612 -12.41375 -12.23784 -12.03672 -11.90131 -11.61722 -11.17458 -10.74323 -10.33940 -9.54508 -9.53185 -9.26375 -8.76069 -8.01733 -6.35651 0.63346 0.69770 0.95753 0.98053 1.44873 1.59832 1.73056 2.28144 2.60950 2.70237 3.09412 3.15984 3.55096 3.84910 4.04083 4.27624 4.37077 4.44776 4.47434 4.62059 4.78172 4.79772 4.87280 5.00123 5.05871 5.15612 5.26181 5.41246 5.43745 5.61445 5.77456 5.83704 5.90769 6.04736 6.23057 6.34917 6.50367 6.63624 6.81385 6.93560 7.04770 7.19508 7.46819 7.97334 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014784 B = 0.007948 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.513626 B = 3521.977692 C = 4606.371377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.039 4.039 3 N -0.444 5.444 4 C -0.019 4.019 5 C 0.221 3.779 6 N -0.652 5.652 7 C -0.009 4.009 8 C -0.080 4.080 9 C -0.252 4.252 10 C -0.086 4.086 11 C -0.236 4.236 12 C 0.077 3.923 13 C -0.519 4.519 14 H 0.064 0.936 15 C 0.012 3.988 16 N -0.792 5.792 17 Si 1.102 2.898 18 H -0.271 1.271 19 H -0.266 1.266 20 H -0.260 1.260 21 C -0.253 4.253 22 C 0.217 3.783 23 N -0.850 5.850 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.108 0.892 28 H 0.402 0.598 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.283 0.717 34 H 0.150 0.850 35 H 0.410 0.590 36 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.332 -11.077 -3.665 12.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.185 4.185 3 N -0.153 5.153 4 C -0.183 4.183 5 C 0.113 3.887 6 N -0.274 5.274 7 C -0.103 4.103 8 C -0.100 4.100 9 C -0.271 4.271 10 C -0.104 4.104 11 C -0.256 4.256 12 C 0.073 3.927 13 C -0.546 4.546 14 H 0.082 0.918 15 C -0.208 4.208 16 N -0.412 5.412 17 Si 0.920 3.080 18 H -0.195 1.195 19 H -0.191 1.191 20 H -0.185 1.185 21 C -0.288 4.288 22 C 0.107 3.893 23 N -0.393 5.393 24 H 0.095 0.905 25 H 0.106 0.894 26 H 0.077 0.923 27 H 0.126 0.874 28 H 0.239 0.761 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.130 0.870 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.168 0.832 35 H 0.241 0.759 36 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -5.120 -9.547 -2.153 11.045 hybrid contribution 1.175 -1.256 -1.536 2.306 sum -3.945 -10.803 -3.689 12.078 Atomic orbital electron populations 1.20408 0.87444 1.02941 1.02718 1.21040 0.97900 0.86930 1.12602 1.67033 1.09548 1.30105 1.08584 1.21495 0.88844 0.96624 1.11385 1.18679 0.84925 0.94059 0.91035 1.40992 1.01479 1.06419 1.78483 1.17335 1.07963 0.91881 0.93170 1.21041 0.97384 0.95489 0.96086 1.20511 1.10486 0.97588 0.98533 1.20661 0.97674 0.98599 0.93493 1.20748 1.06435 0.99777 0.98629 1.18024 0.91200 0.92018 0.91499 1.20274 1.33384 0.96290 1.04604 0.91753 1.28202 0.89961 0.92554 1.10129 1.70600 1.26458 1.20621 1.23554 0.83200 0.78770 0.76757 0.69266 1.19506 1.19104 1.18475 1.20495 0.93003 0.96549 1.18782 1.18188 0.90878 0.88143 0.92088 1.42286 1.09410 1.03704 1.83875 0.90511 0.89413 0.92338 0.87432 0.76120 0.86718 0.86195 0.87035 0.89738 0.90494 0.83237 0.75857 0.76152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.02 9.74 71.24 0.69 -1.33 16 2 C -0.04 -1.41 6.80 42.73 0.29 -1.12 16 3 N -0.44 -19.94 10.26 -182.74 -1.87 -21.82 16 4 C -0.02 -0.92 9.65 84.90 0.82 -0.10 16 5 C 0.22 9.19 5.81 38.33 0.22 9.41 16 6 N -0.65 -26.50 4.79 -179.11 -0.86 -27.36 16 7 C -0.01 -0.43 4.85 39.02 0.19 -0.24 16 8 C -0.08 -3.41 9.96 22.38 0.22 -3.18 16 9 C -0.25 -10.51 10.03 22.41 0.22 -10.29 16 10 C -0.09 -3.85 9.96 22.01 0.22 -3.63 16 11 C -0.24 -12.03 8.16 22.46 0.18 -11.85 16 12 C 0.08 3.98 4.47 -21.17 -0.09 3.89 16 13 C -0.52 -27.44 7.36 23.36 0.17 -27.27 16 14 H 0.06 3.47 7.47 -2.91 -0.02 3.45 16 15 C 0.01 0.60 4.71 85.24 0.40 1.00 16 16 N -0.79 -43.32 12.44 21.83 0.27 -43.04 16 17 Si 1.10 44.64 30.04 68.60 2.06 46.70 16 18 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 19 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 20 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 21 C -0.25 -8.53 9.91 22.72 0.23 -8.31 16 22 C 0.22 6.68 6.75 38.28 0.26 6.94 16 23 N -0.85 -16.38 8.99 -51.17 -0.46 -16.84 16 24 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.09 1.66 6.53 -2.38 -0.02 1.65 16 26 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.11 5.92 6.51 -2.91 -0.02 5.90 16 28 H 0.40 13.86 8.85 -92.71 -0.82 13.04 16 29 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 30 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 31 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 32 H 0.08 4.53 6.68 -2.91 -0.02 4.51 16 33 H 0.28 16.31 7.26 -92.71 -0.67 15.64 16 34 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 35 H 0.41 6.00 6.83 -92.71 -0.63 5.36 16 36 H 0.41 5.90 8.85 -92.70 -0.82 5.08 16 Total: -1.00 -64.53 303.50 2.13 -62.40 By element: Atomic # 1 Polarization: 47.08 SS G_CDS: -1.03 Total: 46.04 kcal Atomic # 6 Polarization: -50.11 SS G_CDS: 4.03 Total: -46.08 kcal Atomic # 7 Polarization: -106.14 SS G_CDS: -2.92 Total: -109.06 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.06 Total: 46.70 kcal Total: -64.53 2.13 -62.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210290572.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.636 kcal (2) G-P(sol) polarization free energy of solvation -64.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds