Wall clock time and date at job start Mon Mar 30 2020 01:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00199 * 2 1 4 4 N 1.46499 * 109.47211 * 124.99744 * 3 2 1 5 5 C 1.34611 * 125.80327 * 125.00021 * 4 3 2 6 6 C 1.37917 * 107.39365 * 179.97438 * 5 4 3 7 7 C 1.47905 * 126.37670 * 179.97438 * 6 5 4 8 8 C 1.39958 * 119.45301 * 179.97438 * 7 6 5 9 9 C 1.36546 * 119.46625 * 180.02562 * 8 7 6 10 10 C 1.41342 * 118.41963 * 0.02562 * 9 8 7 11 11 C 1.41064 * 120.54318 * 179.72244 * 10 9 8 12 12 H 1.08000 * 119.99413 * 154.74054 * 11 10 9 13 13 C 1.39953 * 120.00260 * 334.74717 * 11 10 9 14 14 N 1.30839 * 119.99881 * 343.73210 * 13 11 10 15 15 Si 1.86804 * 119.99904 * 163.73111 * 13 11 10 16 16 H 1.48495 * 109.47155 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46864 * 119.99922 * 15 13 11 18 18 H 1.48498 * 109.47185 * 239.99696 * 15 13 11 19 19 C 1.40897 * 118.90707 * 0.02562 * 10 9 8 20 20 C 1.50699 * 119.80272 * 179.97438 * 19 10 9 21 21 N 1.31306 * 120.40325 * 359.97438 * 19 10 9 22 22 C 1.41126 * 107.24365 * 0.25995 * 6 5 4 23 23 N 1.30535 * 108.10212 * 359.55888 * 22 6 5 24 24 H 1.07998 * 119.99542 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.00307 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99907 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47143 * 4.99105 * 3 2 1 28 28 H 1.09006 * 109.47189 * 244.99424 * 3 2 1 29 29 H 1.08001 * 126.30562 * 359.96489 * 5 4 3 30 30 H 1.07994 * 120.27292 * 0.02722 * 8 7 6 31 31 H 1.07994 * 120.79129 * 179.97438 * 9 8 7 32 32 H 0.97003 * 119.99804 * 179.97438 * 14 13 11 33 33 H 1.08995 * 109.47295 * 89.99321 * 20 19 10 34 34 H 1.08994 * 109.47393 * 210.00144 * 20 19 10 35 35 H 1.09002 * 109.46973 * 330.00059 * 20 19 10 36 36 H 1.07995 * 125.94911 * 179.69804 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3318 1.1314 5 6 4.3197 1.5511 1.0557 6 6 4.8210 1.4939 2.3393 7 6 6.2336 1.6757 2.7383 8 6 6.5835 1.5877 4.0905 9 6 7.8875 1.7560 4.4592 10 6 8.8434 2.0158 3.4510 11 6 10.2018 2.2028 3.7822 12 1 10.9692 1.9969 3.0507 13 6 10.5551 2.6551 5.0587 14 7 9.6527 3.2031 5.8315 15 14 12.3149 2.4762 5.6591 16 1 13.1346 1.8285 4.6037 17 1 12.8722 3.8182 5.9654 18 1 12.3369 1.6394 6.8856 19 6 8.4162 2.0914 2.1105 20 6 9.4182 2.3680 1.0195 21 7 7.1502 1.9222 1.8060 22 6 3.7362 1.2230 3.2004 23 7 2.6547 1.1345 2.4748 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0894 28 1 2.6214 1.4025 -0.9314 29 1 4.8867 1.7373 0.1556 30 1 5.8285 1.3883 4.8364 31 1 8.1812 1.6930 5.4965 32 1 9.8975 3.5162 6.7164 33 1 9.8208 1.4255 0.6484 34 1 8.9295 2.9007 0.2038 35 1 10.2294 2.9779 1.4173 36 1 3.7909 1.1109 4.2731 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222382004.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:31 Heat of formation + Delta-G solvation = 113.795975 kcal Electronic energy + Delta-G solvation = -19011.974185 eV Core-core repulsion = 16076.662167 eV Total energy + Delta-G solvation = -2935.312018 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.57086 -38.31262 -35.39167 -34.14680 -32.15601 -31.23785 -30.77915 -28.99246 -26.94724 -26.43614 -24.48653 -21.93613 -21.28715 -20.27236 -19.76811 -19.30875 -17.34309 -16.74360 -15.53912 -15.30704 -14.97407 -14.52092 -14.30978 -13.85373 -13.46962 -13.28803 -12.89468 -12.51767 -12.38370 -12.06249 -11.71669 -11.60987 -11.49413 -11.44859 -11.15729 -11.08031 -10.87076 -10.60516 -10.27144 -9.78898 -9.64614 -9.44408 -8.98306 -8.43844 -8.13908 -7.99336 -7.04605 -6.81025 -4.41741 1.89884 2.17177 2.57718 2.96492 3.00681 3.02072 3.02713 3.06028 3.70966 3.82730 4.59346 4.66353 4.76178 4.98610 5.35618 5.39157 5.44046 5.65056 5.66916 5.68859 6.10914 6.25409 6.34716 6.37997 6.40672 6.46013 6.60227 6.67252 6.84110 6.93831 6.99832 7.11760 7.17605 7.38333 7.45325 7.78746 7.89107 7.97261 8.20479 8.42327 8.65079 8.74058 9.67752 10.02138 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044892 B = 0.003704 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.572984 B = 7558.380389 C = 8039.098862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.164 4.164 3 C 0.165 3.835 4 N -0.377 5.377 5 C 0.050 3.950 6 C -0.137 4.137 7 C 0.056 3.944 8 C -0.135 4.135 9 C -0.134 4.134 10 C 0.067 3.933 11 C -0.440 4.440 12 H 0.086 0.914 13 C 0.073 3.927 14 N -0.785 5.785 15 Si 0.911 3.089 16 H -0.258 1.258 17 H -0.273 1.273 18 H -0.271 1.271 19 C 0.007 3.993 20 C -0.070 4.070 21 N -0.460 5.460 22 C 0.051 3.949 23 N -0.306 5.306 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.113 0.887 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.174 0.826 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.283 0.717 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.466 -2.825 -6.559 11.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.044 3.956 4 N -0.160 5.160 5 C -0.096 4.096 6 C -0.148 4.148 7 C -0.081 4.081 8 C -0.156 4.156 9 C -0.160 4.160 10 C 0.063 3.937 11 C -0.470 4.470 12 H 0.104 0.896 13 C -0.146 4.146 14 N -0.410 5.410 15 Si 0.735 3.265 16 H -0.182 1.182 17 H -0.198 1.198 18 H -0.196 1.196 19 C -0.137 4.137 20 C -0.128 4.128 21 N -0.169 5.169 22 C -0.136 4.136 23 N -0.127 5.127 24 H 0.117 0.883 25 H 0.119 0.881 26 H 0.130 0.870 27 H 0.101 0.899 28 H 0.119 0.881 29 H 0.191 0.809 30 H 0.116 0.884 31 H 0.143 0.857 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -10.089 -2.834 -7.295 12.769 hybrid contribution 1.887 0.069 1.403 2.353 sum -8.202 -2.765 -5.892 10.471 Atomic orbital electron populations 1.23844 0.95588 1.02136 0.99155 1.23018 0.96218 0.98129 1.00874 1.20658 0.91924 0.96553 0.86443 1.48179 1.05903 1.56524 1.05425 1.22807 0.83646 1.03103 1.00020 1.18989 0.93079 1.11561 0.91202 1.18056 0.89423 1.11456 0.89181 1.21166 0.96720 1.02506 0.95161 1.21296 0.91972 1.02451 1.00238 1.18359 0.94230 0.89669 0.91452 1.19602 0.92789 1.37280 0.97304 0.89604 1.26018 0.99921 0.92389 0.96313 1.69816 1.35813 1.26241 1.09118 0.86208 0.81807 0.78953 0.79548 1.18171 1.19838 1.19601 1.20931 0.90219 1.08967 0.93554 1.20236 0.96824 1.00076 0.95617 1.66747 1.01924 1.10803 1.37452 1.23883 0.89653 1.00199 0.99863 1.76981 1.23807 1.25045 0.86907 0.88324 0.88052 0.86951 0.89907 0.88053 0.80858 0.88438 0.85708 0.90580 0.93500 0.93371 0.91539 0.80379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 14.32 29.01 0.42 -1.10 16 2 C -0.16 -1.74 9.69 -36.03 -0.35 -2.09 16 3 C 0.17 1.86 6.93 -5.20 -0.04 1.83 16 4 N -0.38 -6.03 3.65 -61.94 -0.23 -6.25 16 5 C 0.05 0.88 11.22 -16.45 -0.18 0.70 16 6 C -0.14 -2.78 6.10 -104.96 -0.64 -3.42 16 7 C 0.06 1.31 6.76 -82.74 -0.56 0.75 16 8 C -0.13 -3.17 9.54 -39.55 -0.38 -3.55 16 9 C -0.13 -3.41 8.72 -39.01 -0.34 -3.75 16 10 C 0.07 1.75 5.58 -106.64 -0.60 1.15 16 11 C -0.44 -11.01 8.13 -37.87 -0.31 -11.32 16 12 H 0.09 2.04 6.86 -52.49 -0.36 1.67 16 13 C 0.07 1.73 5.19 -17.33 -0.09 1.64 16 14 N -0.79 -19.38 10.95 55.55 0.61 -18.77 16 15 Si 0.91 17.69 29.59 -169.99 -5.03 12.66 16 16 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 17 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 18 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 19 C 0.01 0.17 6.86 -81.81 -0.56 -0.39 16 20 C -0.07 -1.45 9.58 36.01 0.34 -1.10 16 21 N -0.46 -11.19 9.96 -5.40 -0.05 -11.25 16 22 C 0.05 0.94 11.40 -17.01 -0.19 0.74 16 23 N -0.31 -5.48 12.33 30.84 0.38 -5.10 16 24 H 0.10 0.78 7.84 -52.49 -0.41 0.37 16 25 H 0.10 0.78 8.06 -52.49 -0.42 0.36 16 26 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 27 H 0.08 0.84 7.79 -51.93 -0.40 0.44 16 28 H 0.10 0.89 8.06 -51.93 -0.42 0.47 16 29 H 0.17 2.81 8.06 -52.49 -0.42 2.39 16 30 H 0.10 2.01 7.00 -52.49 -0.37 1.64 16 31 H 0.13 3.21 6.26 -52.49 -0.33 2.88 16 32 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.35 6.75 -51.93 -0.35 1.00 16 36 H 0.18 2.87 7.31 -52.49 -0.38 2.48 16 LS Contribution 314.44 15.07 4.74 4.74 Total: -1.00 -29.27 314.44 -7.33 -36.60 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.27 Total: 7.28 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -3.47 Total: -19.91 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.71 Total: -41.38 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.27 -7.33 -36.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222382004.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.399 kcal (2) G-P(sol) polarization free energy of solvation -29.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds