Wall clock time and date at job start Mon Mar 30 2020 01:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 120.00285 * 2 1 4 4 N 1.46501 * 109.47040 * 124.99821 * 3 2 1 5 5 C 1.34578 * 125.79231 * 125.00376 * 4 3 2 6 6 C 1.38002 * 107.38351 * 179.97438 * 5 4 3 7 7 C 1.47742 * 126.39109 * 179.97438 * 6 5 4 8 8 N 1.32623 * 120.00033 * 325.27128 * 7 6 5 9 9 C 1.31769 * 121.70874 * 180.27067 * 8 7 6 10 10 C 1.50704 * 119.24471 * 179.72463 * 9 8 7 11 11 C 1.38830 * 121.51166 * 359.74435 * 9 8 7 12 12 C 1.36902 * 119.81102 * 359.97438 * 11 9 8 13 13 C 1.41084 * 118.40783 * 0.02562 * 12 11 9 14 14 C 1.40875 * 120.72309 * 179.97438 * 13 12 11 15 15 H 1.08008 * 119.99907 * 190.18137 * 14 13 12 16 16 C 1.40011 * 119.99931 * 10.18515 * 14 13 12 17 17 N 1.30815 * 120.00104 * 28.60735 * 16 14 13 18 18 Si 1.86797 * 120.00000 * 208.60350 * 16 14 13 19 19 H 1.48499 * 109.47462 * 265.01392 * 18 16 14 20 20 H 1.48502 * 109.47111 * 25.00983 * 18 16 14 21 21 H 1.48498 * 109.47300 * 145.00940 * 18 16 14 22 22 C 1.41192 * 107.21809 * 0.22980 * 6 5 4 23 23 N 1.30515 * 108.08886 * 359.61045 * 22 6 5 24 24 H 1.07999 * 120.00385 * 179.97438 * 1 2 3 25 25 H 1.08003 * 119.99846 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99846 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47003 * 4.99763 * 3 2 1 28 28 H 1.08998 * 109.46892 * 244.99510 * 3 2 1 29 29 H 1.08007 * 126.31024 * 359.97438 * 5 4 3 30 30 H 1.08999 * 109.46996 * 270.01671 * 10 9 8 31 31 H 1.08999 * 109.47303 * 30.02469 * 10 9 8 32 32 H 1.09004 * 109.47311 * 150.02079 * 10 9 8 33 33 H 1.08007 * 120.09780 * 180.02562 * 11 9 8 34 34 H 1.08007 * 120.79883 * 179.97438 * 12 11 9 35 35 H 0.97006 * 119.99731 * 179.97438 * 17 16 14 36 36 H 1.07999 * 125.95250 * 179.77124 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 4.3194 1.5510 1.0555 6 6 4.8210 1.4937 2.3399 7 6 6.2319 1.6753 2.7387 8 7 7.2054 1.2483 1.9457 9 6 8.4748 1.3881 2.2705 10 6 9.5359 0.8767 1.3304 11 6 8.8571 1.9952 3.4590 12 6 7.9029 2.4640 4.3215 13 6 6.5456 2.3114 3.9681 14 6 5.5236 2.7754 4.8195 15 1 4.4951 2.5104 4.6230 16 6 5.8412 3.5801 5.9204 17 7 6.8975 4.3509 5.8842 18 14 4.7564 3.5531 7.4409 19 1 3.7698 4.6604 7.3649 20 1 4.0387 2.2551 7.5140 21 1 5.5980 3.7223 8.6526 22 6 3.7352 1.2233 3.2009 23 7 2.6545 1.1343 2.4747 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6213 1.4025 -0.9313 29 1 4.8863 1.7375 0.1553 30 1 9.7709 -0.1588 1.5765 31 1 9.1705 0.9327 0.3050 32 1 10.4339 1.4865 1.4298 33 1 9.9044 2.0981 3.7022 34 1 8.1824 2.9386 5.2506 35 1 7.1172 4.9087 6.6468 36 1 3.7892 1.1124 4.2739 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222382012.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:33 Heat of formation + Delta-G solvation = 122.454994 kcal Electronic energy + Delta-G solvation = -19479.686163 eV Core-core repulsion = 16544.749628 eV Total energy + Delta-G solvation = -2934.936535 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.36218 -38.22155 -35.23429 -34.37309 -32.04316 -31.02316 -30.71811 -28.59681 -27.89395 -25.89951 -24.22131 -21.91126 -21.13427 -20.33153 -19.60433 -19.29794 -17.45418 -16.48223 -15.58028 -15.10178 -14.80101 -14.56118 -14.17968 -13.74459 -13.46575 -13.17516 -12.85220 -12.57629 -12.22745 -12.02817 -11.75048 -11.64858 -11.46076 -11.30475 -11.18736 -11.10679 -10.84392 -10.51698 -10.11409 -9.73219 -9.58970 -9.19940 -8.67660 -8.40228 -8.11428 -7.88395 -7.07463 -6.90181 -4.38442 2.03414 2.38902 2.67048 2.92007 2.99099 3.03184 3.21105 3.24019 3.78574 3.86154 4.48626 4.73888 4.90238 5.11544 5.48620 5.52825 5.65755 5.70650 5.78557 5.83666 6.16149 6.30751 6.39689 6.47031 6.47862 6.54876 6.58075 6.64620 6.70056 6.86636 7.10057 7.21724 7.28495 7.40581 7.66090 7.80548 7.94170 8.01340 8.41199 8.47977 8.64242 8.77722 9.74756 9.87028 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.013800 B = 0.006774 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.515566 B = 4132.702456 C = 5961.619328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.161 4.161 3 C 0.167 3.833 4 N -0.380 5.380 5 C 0.043 3.957 6 C -0.119 4.119 7 C 0.052 3.948 8 N -0.452 5.452 9 C -0.028 4.028 10 C -0.070 4.070 11 C -0.140 4.140 12 C -0.155 4.155 13 C 0.076 3.924 14 C -0.441 4.441 15 H 0.100 0.900 16 C 0.079 3.921 17 N -0.764 5.764 18 Si 0.903 3.097 19 H -0.267 1.267 20 H -0.254 1.254 21 H -0.273 1.273 22 C 0.062 3.938 23 N -0.313 5.313 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.168 0.832 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.285 0.715 36 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.606 -3.148 -5.742 8.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.179 4.179 3 C 0.045 3.955 4 N -0.164 5.164 5 C -0.103 4.103 6 C -0.131 4.131 7 C -0.089 4.089 8 N -0.160 5.160 9 C -0.168 4.168 10 C -0.128 4.128 11 C -0.161 4.161 12 C -0.181 4.181 13 C 0.071 3.929 14 C -0.468 4.468 15 H 0.118 0.882 16 C -0.143 4.143 17 N -0.387 5.387 18 Si 0.726 3.274 19 H -0.192 1.192 20 H -0.177 1.177 21 H -0.197 1.197 22 C -0.124 4.124 23 N -0.134 5.134 24 H 0.118 0.882 25 H 0.116 0.884 26 H 0.130 0.870 27 H 0.099 0.901 28 H 0.117 0.883 29 H 0.185 0.815 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.150 0.850 35 H 0.096 0.904 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -6.988 -3.533 -6.518 10.188 hybrid contribution 0.878 0.745 1.546 1.928 sum -6.110 -2.789 -4.972 8.356 Atomic orbital electron populations 1.23821 0.95610 1.02034 0.99533 1.23029 0.96185 0.98197 1.00536 1.20602 0.91921 0.96406 0.86527 1.48089 1.05661 1.57133 1.05473 1.22738 0.83868 1.03965 0.99682 1.18702 0.92907 1.10738 0.90752 1.18561 0.88809 1.08313 0.93201 1.66784 0.99995 1.15933 1.33305 1.20101 0.90906 1.08824 0.96938 1.20229 0.95594 0.99091 0.97837 1.21173 0.98355 1.00441 0.96096 1.21560 0.92320 1.03618 1.00573 1.18265 0.93214 0.90632 0.90750 1.19990 0.96173 1.24482 1.06150 0.88207 1.26144 0.95242 0.92512 1.00392 1.69870 1.23755 1.14510 1.30544 0.86360 0.80559 0.80463 0.80025 1.19223 1.17694 1.19738 1.24224 0.89473 0.98529 1.00213 1.76995 1.24064 1.25644 0.86661 0.88160 0.88372 0.87015 0.90073 0.88319 0.81521 0.93553 0.92935 0.93213 0.88792 0.84968 0.90365 0.79345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 14.32 29.02 0.42 -1.33 16 2 C -0.16 -1.91 9.69 -36.02 -0.35 -2.26 16 3 C 0.17 2.12 6.93 -5.19 -0.04 2.09 16 4 N -0.38 -6.76 3.65 -61.92 -0.23 -6.99 16 5 C 0.04 0.83 11.41 -16.43 -0.19 0.65 16 6 C -0.12 -2.70 5.66 -104.98 -0.59 -3.30 16 7 C 0.05 1.31 6.74 -82.23 -0.55 0.75 16 8 N -0.45 -11.18 10.14 -5.45 -0.06 -11.23 16 9 C -0.03 -0.64 6.79 -82.40 -0.56 -1.20 16 10 C -0.07 -1.29 10.15 36.01 0.37 -0.93 16 11 C -0.14 -3.31 9.64 -39.85 -0.38 -3.69 16 12 C -0.16 -3.97 8.91 -38.99 -0.35 -4.32 16 13 C 0.08 1.99 5.71 -106.41 -0.61 1.38 16 14 C -0.44 -11.00 8.28 -37.92 -0.31 -11.32 16 15 H 0.10 2.39 4.07 -52.48 -0.21 2.17 16 16 C 0.08 1.87 5.07 -17.32 -0.09 1.78 16 17 N -0.76 -18.47 10.80 55.55 0.60 -17.86 16 18 Si 0.90 17.53 29.64 -169.99 -5.04 12.49 16 19 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 20 H -0.25 -4.88 7.11 56.52 0.40 -4.47 16 21 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 22 C 0.06 1.33 9.95 -16.99 -0.17 1.16 16 23 N -0.31 -6.30 12.33 30.85 0.38 -5.92 16 24 H 0.10 0.88 8.06 -52.49 -0.42 0.46 16 25 H 0.10 0.90 7.84 -52.48 -0.41 0.49 16 26 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 27 H 0.08 0.95 7.79 -51.93 -0.40 0.54 16 28 H 0.10 1.00 8.06 -51.93 -0.42 0.58 16 29 H 0.17 2.91 8.06 -52.48 -0.42 2.49 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.09 1.95 8.06 -52.48 -0.42 1.53 16 34 H 0.13 3.40 5.70 -52.48 -0.30 3.10 16 35 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 36 H 0.19 3.89 6.37 -52.49 -0.33 3.56 16 LS Contribution 311.86 15.07 4.70 4.70 Total: -1.00 -29.14 311.86 -7.22 -36.36 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -4.17 Total: 9.00 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -3.41 Total: -20.54 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.70 Total: -42.01 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.04 Total: 12.49 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.14 -7.22 -36.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222382012.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.819 kcal (2) G-P(sol) polarization free energy of solvation -29.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds