Wall clock time and date at job start Mon Mar 30 2020 01:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 120.00285 * 2 1 4 4 N 1.46501 * 109.47040 * 124.99821 * 3 2 1 5 5 C 1.34578 * 125.79231 * 125.00376 * 4 3 2 6 6 C 1.38002 * 107.38351 * 179.97438 * 5 4 3 7 7 C 1.47742 * 126.39109 * 179.97438 * 6 5 4 8 8 N 1.32623 * 120.00033 * 325.27128 * 7 6 5 9 9 C 1.31769 * 121.70874 * 180.27067 * 8 7 6 10 10 C 1.50704 * 119.24471 * 179.72463 * 9 8 7 11 11 C 1.38830 * 121.51166 * 359.74435 * 9 8 7 12 12 C 1.36902 * 119.81102 * 359.97438 * 11 9 8 13 13 C 1.41084 * 118.40783 * 0.02562 * 12 11 9 14 14 C 1.40875 * 120.72309 * 179.97438 * 13 12 11 15 15 H 1.08008 * 119.99907 * 190.18137 * 14 13 12 16 16 C 1.40011 * 119.99931 * 10.18515 * 14 13 12 17 17 N 1.30815 * 120.00104 * 28.60735 * 16 14 13 18 18 Si 1.86797 * 120.00000 * 208.60350 * 16 14 13 19 19 H 1.48499 * 109.47462 * 265.01392 * 18 16 14 20 20 H 1.48502 * 109.47111 * 25.00983 * 18 16 14 21 21 H 1.48498 * 109.47300 * 145.00940 * 18 16 14 22 22 C 1.41192 * 107.21809 * 0.22980 * 6 5 4 23 23 N 1.30515 * 108.08886 * 359.61045 * 22 6 5 24 24 H 1.07999 * 120.00385 * 179.97438 * 1 2 3 25 25 H 1.08003 * 119.99846 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99846 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47003 * 4.99763 * 3 2 1 28 28 H 1.08998 * 109.46892 * 244.99510 * 3 2 1 29 29 H 1.08007 * 126.31024 * 359.97438 * 5 4 3 30 30 H 1.08999 * 109.46996 * 270.01671 * 10 9 8 31 31 H 1.08999 * 109.47303 * 30.02469 * 10 9 8 32 32 H 1.09004 * 109.47311 * 150.02079 * 10 9 8 33 33 H 1.08007 * 120.09780 * 180.02562 * 11 9 8 34 34 H 1.08007 * 120.79883 * 179.97438 * 12 11 9 35 35 H 0.97006 * 119.99731 * 179.97438 * 17 16 14 36 36 H 1.07999 * 125.95250 * 179.77124 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 4.3194 1.5510 1.0555 6 6 4.8210 1.4937 2.3399 7 6 6.2319 1.6753 2.7387 8 7 7.2054 1.2483 1.9457 9 6 8.4748 1.3881 2.2705 10 6 9.5359 0.8767 1.3304 11 6 8.8571 1.9952 3.4590 12 6 7.9029 2.4640 4.3215 13 6 6.5456 2.3114 3.9681 14 6 5.5236 2.7754 4.8195 15 1 4.4951 2.5104 4.6230 16 6 5.8412 3.5801 5.9204 17 7 6.8975 4.3509 5.8842 18 14 4.7564 3.5531 7.4409 19 1 3.7698 4.6604 7.3649 20 1 4.0387 2.2551 7.5140 21 1 5.5980 3.7223 8.6526 22 6 3.7352 1.2233 3.2009 23 7 2.6545 1.1343 2.4747 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6213 1.4025 -0.9313 29 1 4.8863 1.7375 0.1553 30 1 9.7709 -0.1588 1.5765 31 1 9.1705 0.9327 0.3050 32 1 10.4339 1.4865 1.4298 33 1 9.9044 2.0981 3.7022 34 1 8.1824 2.9386 5.2506 35 1 7.1172 4.9087 6.6468 36 1 3.7892 1.1124 4.2739 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222382012.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:32 Heat of formation + Delta-G solvation = 106.545325 kcal Electronic energy + Delta-G solvation = -19480.376058 eV Core-core repulsion = 16544.749628 eV Total energy + Delta-G solvation = -2935.626430 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.89999 -40.01146 -36.36714 -36.08689 -33.63254 -32.55326 -32.41502 -30.17216 -29.56483 -27.18318 -25.92543 -23.63331 -22.76957 -21.71505 -21.12305 -20.58925 -19.26897 -17.92379 -17.30034 -16.37930 -16.19677 -15.99182 -15.78766 -15.41324 -14.92529 -14.76903 -14.23454 -14.07342 -13.69768 -13.57586 -13.31061 -13.12403 -13.02125 -12.79243 -12.77513 -12.48898 -12.19124 -12.07730 -11.73111 -11.41521 -10.98469 -10.51509 -10.23760 -10.11762 -9.94568 -9.69728 -8.82041 -8.63973 -6.23564 0.66291 0.99898 1.10686 1.21955 1.38686 1.48805 1.59693 1.98795 2.14274 2.17071 2.69528 3.67824 3.79649 3.92003 4.06578 4.15507 4.19175 4.35769 4.49839 4.61832 4.70849 4.83012 4.89940 4.97718 4.98540 5.03279 5.09305 5.14843 5.37000 5.44822 5.48673 5.61691 5.67672 5.76853 5.97478 6.08361 6.17460 6.28556 6.58984 6.79259 6.89659 6.93386 7.89543 8.14072 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.013800 B = 0.006774 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.515566 B = 4132.702456 C = 5961.619328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.185 4.185 3 C 0.155 3.845 4 N -0.366 5.366 5 C 0.058 3.942 6 C -0.161 4.161 7 C 0.039 3.961 8 N -0.465 5.465 9 C -0.040 4.040 10 C -0.064 4.064 11 C -0.148 4.148 12 C -0.182 4.182 13 C 0.045 3.955 14 C -0.465 4.465 15 H 0.103 0.897 16 C 0.043 3.957 17 N -0.793 5.793 18 Si 0.972 3.028 19 H -0.262 1.262 20 H -0.252 1.252 21 H -0.263 1.263 22 C 0.051 3.949 23 N -0.320 5.320 24 H 0.115 0.885 25 H 0.111 0.889 26 H 0.103 0.897 27 H 0.096 0.904 28 H 0.128 0.872 29 H 0.189 0.811 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.294 0.706 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.699 -3.388 -6.670 10.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.204 4.204 3 C 0.036 3.964 4 N -0.149 5.149 5 C -0.090 4.090 6 C -0.173 4.173 7 C -0.102 4.102 8 N -0.174 5.174 9 C -0.180 4.180 10 C -0.122 4.122 11 C -0.168 4.168 12 C -0.207 4.207 13 C 0.040 3.960 14 C -0.493 4.493 15 H 0.121 0.879 16 C -0.177 4.177 17 N -0.416 5.416 18 Si 0.792 3.208 19 H -0.187 1.187 20 H -0.176 1.176 21 H -0.187 1.187 22 C -0.135 4.135 23 N -0.142 5.142 24 H 0.133 0.867 25 H 0.129 0.871 26 H 0.121 0.879 27 H 0.115 0.885 28 H 0.146 0.854 29 H 0.206 0.794 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.106 0.894 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -8.096 -3.780 -7.466 11.644 hybrid contribution 1.155 0.800 1.675 2.186 sum -6.941 -2.980 -5.791 9.518 Atomic orbital electron populations 1.24082 0.95058 1.03410 0.96441 1.22923 0.96796 0.97372 1.03323 1.21106 0.91967 0.97532 0.85753 1.48532 1.05839 1.54732 1.05764 1.22980 0.84698 1.02007 0.99285 1.18813 0.92284 1.13753 0.92470 1.18981 0.90251 1.07822 0.93097 1.66901 1.00566 1.16442 1.33539 1.20903 0.91613 1.07894 0.97586 1.20271 0.94856 1.00119 0.96924 1.21476 0.99310 1.00017 0.96021 1.21630 0.92978 1.05100 1.01010 1.18630 0.93852 0.91714 0.91764 1.20228 0.96283 1.25435 1.07311 0.87916 1.26945 0.96538 0.91586 1.02609 1.69886 1.25042 1.14967 1.31736 0.85333 0.78774 0.80398 0.76338 1.18667 1.17575 1.18680 1.24139 0.89627 0.99405 1.00303 1.76924 1.23576 1.25805 0.87871 0.86700 0.87079 0.87925 0.88542 0.85440 0.79447 0.92087 0.92279 0.90964 0.86314 0.85929 0.89429 0.79784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 14.32 67.79 0.97 -1.68 16 2 C -0.19 -4.01 9.69 25.65 0.25 -3.76 16 3 C 0.16 3.56 6.93 85.63 0.59 4.15 16 4 N -0.37 -12.50 3.65 -349.81 -1.28 -13.78 16 5 C 0.06 2.22 11.41 84.22 0.96 3.18 16 6 C -0.16 -7.42 5.66 -20.10 -0.11 -7.54 16 7 C 0.04 2.02 6.74 42.45 0.29 2.31 16 8 N -0.47 -23.21 10.14 -171.15 -1.74 -24.95 16 9 C -0.04 -1.86 6.79 42.71 0.29 -1.57 16 10 C -0.06 -2.25 10.15 71.24 0.72 -1.53 16 11 C -0.15 -7.04 9.64 22.10 0.21 -6.83 16 12 C -0.18 -9.60 8.91 22.65 0.20 -9.39 16 13 C 0.05 2.45 5.71 -21.02 -0.12 2.33 16 14 C -0.47 -24.06 8.28 23.35 0.19 -23.87 16 15 H 0.10 5.10 4.07 -2.91 -0.01 5.09 16 16 C 0.04 2.06 5.07 85.27 0.43 2.49 16 17 N -0.79 -39.21 10.80 21.84 0.24 -38.98 16 18 Si 0.97 36.22 29.64 68.60 2.03 38.25 16 19 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 20 H -0.25 -9.26 7.11 99.48 0.71 -8.56 16 21 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 22 C 0.05 2.21 9.95 85.61 0.85 3.06 16 23 N -0.32 -12.74 12.33 -56.31 -0.69 -13.44 16 24 H 0.11 1.67 8.06 -2.91 -0.02 1.65 16 25 H 0.11 1.65 7.84 -2.91 -0.02 1.63 16 26 H 0.10 2.40 8.06 -2.91 -0.02 2.38 16 27 H 0.10 1.96 7.79 -2.39 -0.02 1.94 16 28 H 0.13 2.16 8.06 -2.39 -0.02 2.14 16 29 H 0.19 6.24 8.06 -2.91 -0.02 6.22 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.07 2.19 8.07 -2.38 -0.02 2.17 16 33 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 34 H 0.12 6.57 5.70 -2.91 -0.02 6.55 16 35 H 0.29 12.95 8.30 -92.70 -0.77 12.18 16 36 H 0.19 7.94 6.37 -2.91 -0.02 7.92 16 Total: -1.00 -64.18 311.86 5.39 -58.79 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: 1.09 Total: 32.73 kcal Atomic # 6 Polarization: -44.37 SS G_CDS: 5.73 Total: -38.64 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -3.47 Total: -91.14 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.25 kcal Total: -64.18 5.39 -58.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222382012.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.337 kcal (2) G-P(sol) polarization free energy of solvation -64.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds