Wall clock time and date at job start Mon Mar 30 2020 00:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.47266 * 2 1 4 4 C 1.34225 * 117.00206 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99911 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00206 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.46919 * 180.02562 * 6 4 3 8 8 H 1.08998 * 109.47326 * 54.88715 * 7 6 4 9 9 C 1.50701 * 109.46895 * 174.88774 * 7 6 4 10 10 H 1.07999 * 120.00364 * 245.39778 * 9 7 6 11 11 C 1.37878 * 119.99931 * 65.40267 * 9 7 6 12 12 N 1.31521 * 120.00207 * 6.32593 * 11 9 7 13 13 Si 1.86806 * 119.99875 * 186.31830 * 11 9 7 14 14 H 1.48496 * 109.46972 * 84.99004 * 13 11 9 15 15 H 1.48505 * 109.46977 * 204.98387 * 13 11 9 16 16 H 1.48496 * 109.47298 * 324.98495 * 13 11 9 17 17 O 1.42904 * 109.47161 * 294.88240 * 7 6 4 18 18 C 1.42897 * 113.99907 * 149.99804 * 17 7 6 19 19 N 1.46500 * 109.47014 * 180.02562 * 18 17 7 20 20 C 1.34431 * 126.82401 * 359.72053 * 19 18 17 21 21 N 1.30830 * 108.07721 * 179.88816 * 20 19 18 22 22 C 1.33245 * 109.83000 * 0.37992 * 21 20 19 23 23 N 1.30715 * 108.94343 * 359.76273 * 22 21 20 24 24 H 1.08995 * 109.47337 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47465 * 300.00386 * 1 2 3 26 26 H 1.09004 * 109.46805 * 59.99910 * 1 2 3 27 27 H 1.09000 * 109.47105 * 239.99976 * 2 1 3 28 28 H 1.08997 * 109.46521 * 119.99867 * 2 1 3 29 29 H 1.08991 * 109.47092 * 59.99790 * 6 4 3 30 30 H 1.09000 * 109.46606 * 300.00156 * 6 4 3 31 31 H 0.97000 * 120.00179 * 179.97438 * 12 11 9 32 32 H 1.09010 * 109.46891 * 60.00690 * 18 17 7 33 33 H 1.08997 * 109.47866 * 300.00562 * 18 17 7 34 34 H 1.07996 * 125.95855 * 0.03221 * 20 19 18 35 35 H 1.07996 * 125.52686 * 179.72689 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0012 7 6 5.4487 2.8572 0.0010 8 1 5.7805 2.2483 -0.8399 9 6 6.0244 4.2442 -0.1250 10 1 6.5865 4.5177 -1.0056 11 6 5.8336 5.1641 0.8842 12 7 5.2584 4.7971 2.0086 13 14 6.3922 6.9319 0.6545 14 1 5.3333 7.6979 -0.0505 15 1 6.6472 7.5468 1.9820 16 1 7.6399 6.9561 -0.1502 17 8 5.8947 2.2656 1.2230 18 6 7.1178 1.5364 1.1032 19 7 7.4810 0.9746 2.4065 20 6 6.8009 1.1064 3.5585 21 7 7.4506 0.4570 4.4901 22 6 8.5496 -0.0929 3.9751 23 7 8.6120 0.1961 2.7018 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.5845 3.4693 0.8911 30 1 3.5851 3.4697 -0.8888 31 1 5.1245 5.4442 2.7187 32 1 7.9080 2.2057 0.7627 33 1 6.9903 0.7287 0.3825 34 1 5.8780 1.6512 3.6913 35 1 9.2719 -0.6814 4.5212 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223948236.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:08 Heat of formation + Delta-G solvation = -38.476146 kcal Electronic energy + Delta-G solvation = -20924.760081 eV Core-core repulsion = 17539.703034 eV Total energy + Delta-G solvation = -3385.057047 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.40912 -39.86965 -37.23908 -35.91128 -33.52046 -32.05097 -31.65111 -30.64728 -30.05901 -26.29404 -25.50966 -23.27650 -21.90635 -21.29742 -21.06279 -19.96496 -17.32663 -17.03159 -16.61290 -16.21015 -15.70477 -15.50093 -15.02355 -14.59208 -14.33866 -13.83908 -13.66783 -13.49808 -13.07070 -12.73696 -12.36860 -12.15530 -11.90428 -11.59548 -11.33743 -11.19857 -11.05461 -10.98969 -10.84742 -10.28177 -10.21667 -9.80337 -9.58683 -9.44808 -9.24406 -9.16619 -8.80520 -8.24330 -6.27329 -4.47513 2.24535 2.74474 2.91386 3.14207 3.23502 3.24944 3.27512 3.50004 4.21127 4.72868 4.93670 5.03081 5.07300 5.11040 5.32615 5.34132 5.40580 5.82631 5.84115 5.84982 5.96234 6.00825 6.02234 6.23609 6.36431 6.52628 6.75901 6.89015 6.96777 7.15297 7.43195 7.59192 7.83984 8.17264 8.41706 8.60291 8.78579 9.29598 10.74342 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.010360 B = 0.008474 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.086261 B = 3303.619195 C = 5446.843135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.367 6.367 4 C 0.459 3.541 5 O -0.516 6.516 6 C -0.097 4.097 7 C 0.243 3.757 8 H 0.023 0.977 9 C -0.571 4.571 10 H 0.066 0.934 11 C 0.088 3.912 12 N -0.847 5.847 13 Si 0.891 3.109 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.273 1.273 17 O -0.368 6.368 18 C 0.321 3.679 19 N -0.366 5.366 20 C 0.288 3.712 21 N -0.569 5.569 22 C 0.185 3.815 23 N -0.329 5.329 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.127 0.873 30 H 0.102 0.898 31 H 0.266 0.734 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.221 0.779 35 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.072 -5.571 -2.017 7.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.285 6.285 4 C 0.303 3.697 5 O -0.404 6.404 6 C -0.135 4.135 7 C 0.187 3.813 8 H 0.041 0.959 9 C -0.608 4.608 10 H 0.084 0.916 11 C -0.120 4.120 12 N -0.480 5.480 13 Si 0.717 3.283 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.198 1.198 17 O -0.286 6.286 18 C 0.160 3.840 19 N -0.156 5.156 20 C -0.008 4.008 21 N -0.299 5.299 22 C -0.118 4.118 23 N -0.160 5.160 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.144 0.856 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.237 0.763 35 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -4.627 -6.015 -1.921 7.828 hybrid contribution 0.227 0.967 -0.294 1.036 sum -4.401 -5.047 -2.215 7.053 Atomic orbital electron populations 1.21782 0.93256 1.02382 1.03342 1.22860 0.94895 0.81670 1.02041 1.86575 1.26146 1.31097 1.84657 1.24855 0.79482 0.94240 0.71095 1.90578 1.60276 1.43652 1.45884 1.21821 0.97180 0.88134 1.06327 1.19372 0.88123 0.92089 0.81748 0.95854 1.21444 1.37604 0.96249 1.05488 0.91566 1.25029 0.93705 0.98763 0.94547 1.70002 1.39648 1.34369 1.04020 0.86642 0.79390 0.84478 0.77741 1.20139 1.21029 1.19799 1.87857 1.35513 1.68379 1.36835 1.21808 0.90878 0.93244 0.78064 1.50594 1.16883 1.37484 1.10616 1.26026 0.98456 0.95065 0.81276 1.70575 1.08717 1.17783 1.32778 1.25864 0.96478 0.99755 0.89665 1.77900 1.05549 1.15078 1.17512 0.90812 0.91560 0.91710 0.91888 0.91714 0.85556 0.87961 0.92444 0.91062 0.92057 0.76312 0.77230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.29 37.16 0.38 -1.16 16 2 C 0.06 0.83 6.19 37.16 0.23 1.06 16 3 O -0.37 -6.32 10.22 -39.25 -0.40 -6.72 16 4 C 0.46 8.97 7.84 36.01 0.28 9.25 16 5 O -0.52 -11.09 15.17 -24.03 -0.36 -11.46 16 6 C -0.10 -1.96 5.29 -27.88 -0.15 -2.11 16 7 C 0.24 5.41 1.82 -27.88 -0.05 5.36 16 8 H 0.02 0.51 7.60 -51.93 -0.39 0.12 16 9 C -0.57 -13.72 8.86 -34.44 -0.31 -14.02 16 10 H 0.07 1.58 7.82 -52.49 -0.41 1.17 16 11 C 0.09 2.14 5.23 -17.82 -0.09 2.05 16 12 N -0.85 -21.15 11.23 55.43 0.62 -20.53 16 13 Si 0.89 19.21 29.54 -169.99 -5.02 14.18 16 14 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 17 O -0.37 -8.38 7.36 -49.59 -0.37 -8.74 16 18 C 0.32 6.77 7.49 59.85 0.45 7.22 16 19 N -0.37 -7.65 4.04 -67.43 -0.27 -7.93 16 20 C 0.29 5.87 12.05 -90.65 -1.09 4.78 16 21 N -0.57 -11.15 11.19 -15.83 -0.18 -11.33 16 22 C 0.19 3.27 13.03 -91.81 -1.20 2.08 16 23 N -0.33 -6.53 12.70 29.29 0.37 -6.16 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 28 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 29 H 0.13 2.78 6.89 -51.93 -0.36 2.43 16 30 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 31 H 0.27 6.43 8.31 -40.82 -0.34 6.10 16 32 H 0.07 1.53 8.14 -51.92 -0.42 1.10 16 33 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 34 H 0.22 4.32 7.81 -52.49 -0.41 3.91 16 35 H 0.21 2.68 8.06 -52.49 -0.42 2.26 16 LS Contribution 312.43 15.07 4.71 4.71 Total: -1.00 -28.42 312.43 -6.95 -35.38 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -4.51 Total: 4.09 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: -1.54 Total: 14.50 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.54 Total: -45.94 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -1.13 Total: -26.92 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.42 -6.95 -35.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223948236.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.101 kcal (2) G-P(sol) polarization free energy of solvation -28.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds