Wall clock time and date at job start Mon Mar 30 2020 00:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47305 * 2 1 4 4 O 1.42901 * 109.47145 * 120.00199 * 2 1 3 5 5 C 1.42895 * 113.99948 * 269.99781 * 4 2 1 6 6 C 1.53006 * 109.47036 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47131 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47131 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.47051 * 180.02562 * 9 8 7 11 11 H 1.07995 * 119.99838 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99712 * 180.02562 * 10 9 8 13 13 N 1.31503 * 120.00230 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99499 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47081 * 90.00102 * 14 12 10 16 16 H 1.48496 * 109.47054 * 209.99596 * 14 12 10 17 17 H 1.48495 * 109.47555 * 329.99643 * 14 12 10 18 18 C 1.50699 * 109.47179 * 240.00376 * 2 1 3 19 19 N 1.29028 * 124.91715 * 104.99777 * 18 2 1 20 20 C 1.31784 * 117.12062 * 179.97438 * 19 18 2 21 21 C 1.33634 * 114.50421 * 0.02562 * 20 19 18 22 22 S 1.70986 * 124.91564 * 284.69590 * 18 2 1 23 23 H 1.09004 * 109.47291 * 299.99834 * 1 2 3 24 24 H 1.09001 * 109.47579 * 59.99988 * 1 2 3 25 25 H 1.09008 * 109.47407 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46798 * 60.00190 * 5 4 2 27 27 H 1.08993 * 109.47318 * 299.99656 * 5 4 2 28 28 H 1.09001 * 109.46801 * 300.00369 * 6 5 4 29 29 H 1.09001 * 109.46998 * 59.99965 * 6 5 4 30 30 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 31 31 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 32 32 H 1.09000 * 109.47380 * 300.00763 * 8 7 6 33 33 H 1.09001 * 109.46997 * 60.00426 * 8 7 6 34 34 H 1.09001 * 109.47502 * 299.99847 * 9 8 7 35 35 H 1.08998 * 109.47076 * 60.00779 * 9 8 7 36 36 H 0.96999 * 120.00093 * 180.02562 * 13 12 10 37 37 H 1.08007 * 122.74429 * 180.02562 * 20 19 18 38 38 H 1.08001 * 126.03551 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 0.1828 2.2940 6 6 2.7079 -0.6410 3.4792 7 6 2.9148 0.2760 4.6863 8 6 3.4219 -0.5479 5.8716 9 6 3.6282 0.3689 7.0789 10 6 4.1284 -0.4425 8.2462 11 1 4.2832 -1.5058 8.1379 12 6 4.3873 0.1725 9.4528 13 7 4.1983 1.4672 9.5848 14 14 5.0066 -0.8334 10.8998 15 1 6.4912 -0.8661 10.8807 16 1 4.5415 -0.2155 12.1675 17 1 4.4796 -2.2183 10.8018 18 6 2.0323 -0.7103 -1.2305 19 7 2.5366 -0.1277 -2.2654 20 6 2.9287 -0.9004 -3.2583 21 6 2.7444 -2.2075 -3.0496 22 16 2.0232 -2.4054 -1.4543 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.2537 0.6545 2.5588 27 1 2.9319 0.9511 2.0450 28 1 1.9756 -1.4091 3.7280 29 1 3.6541 -1.1131 3.2146 30 1 3.6467 1.0444 4.4377 31 1 1.9683 0.7476 4.9507 32 1 2.6897 -1.3161 6.1200 33 1 4.3683 -1.0199 5.6075 34 1 4.3604 1.1374 6.8308 35 1 2.6817 0.8405 7.3429 36 1 4.3808 1.8999 10.4336 37 1 3.3634 -0.5093 -4.1664 38 1 2.9969 -3.0023 -3.7358 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224377188.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:02 Heat of formation + Delta-G solvation = -31.026234 kcal Electronic energy + Delta-G solvation = -17248.149873 eV Core-core repulsion = 14409.709093 eV Total energy + Delta-G solvation = -2838.440780 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.03380 -38.45939 -35.42458 -33.23009 -32.30537 -30.21790 -29.60711 -26.58188 -25.72865 -23.54636 -22.58590 -21.17611 -20.18191 -20.02564 -18.43351 -16.59090 -16.16228 -16.14394 -15.99015 -15.09242 -14.73955 -14.44699 -14.23754 -13.82739 -13.24973 -13.12251 -12.71041 -12.46742 -12.22913 -11.86588 -11.72191 -11.59110 -11.40331 -11.05397 -10.93956 -10.48623 -10.45700 -10.37958 -9.95742 -9.82910 -9.64547 -9.61818 -9.25966 -9.18398 -8.98908 -8.31666 -5.96852 -3.98863 0.39326 1.10346 1.54064 2.49435 3.15479 3.33871 3.39864 3.43586 4.11501 4.48755 4.62062 4.78245 4.84183 4.90678 5.10285 5.18316 5.19146 5.29042 5.38811 5.44241 5.49524 5.70710 5.71717 5.79691 5.83202 6.06873 6.28063 6.41322 6.50892 6.82958 6.96105 6.99566 7.19800 7.41930 7.72096 7.87655 8.04200 8.47443 9.08696 9.64996 11.14573 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.043673 B = 0.002456 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.971139 B =11398.949396 C =11657.915299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.160 3.840 3 H 0.091 0.909 4 O -0.380 6.380 5 C 0.063 3.937 6 C -0.116 4.116 7 C -0.116 4.116 8 C -0.109 4.109 9 C 0.019 3.981 10 C -0.520 4.520 11 H 0.054 0.946 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.047 3.953 19 N -0.473 5.473 20 C 0.037 3.963 21 C -0.272 4.272 22 S 0.168 5.832 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.015 0.985 35 H 0.015 0.985 36 H 0.260 0.740 37 H 0.176 0.824 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.861 -5.174 -25.901 27.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.099 3.901 3 H 0.109 0.891 4 O -0.299 6.299 5 C -0.013 4.013 6 C -0.154 4.154 7 C -0.153 4.153 8 C -0.147 4.147 9 C -0.018 4.018 10 C -0.558 4.558 11 H 0.073 0.927 12 C -0.146 4.146 13 N -0.536 5.536 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.230 4.230 19 N -0.189 5.189 20 C -0.115 4.115 21 C -0.412 4.412 22 S 0.422 5.578 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.193 0.807 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -7.094 -5.505 -25.141 26.696 hybrid contribution 0.800 0.139 -0.075 0.816 sum -6.293 -5.366 -25.215 26.537 Atomic orbital electron populations 1.22295 0.93595 1.03522 1.03289 1.20245 0.93813 0.95156 0.80908 0.89080 1.87915 1.86567 1.35795 1.19607 1.22774 0.99796 0.93197 0.85539 1.21607 1.01807 0.98974 0.92979 1.21591 1.01235 0.98195 0.94327 1.21610 0.99376 0.98670 0.95039 1.19112 0.96874 0.94565 0.91201 1.21297 1.43781 0.94691 0.96025 0.92731 1.25036 0.95786 0.94916 0.98836 1.69962 1.49295 1.09075 1.25307 0.86605 0.79061 0.80348 0.82060 1.20686 1.21249 1.19889 1.26879 1.02335 0.95144 0.98617 1.66227 1.12674 1.39258 1.00762 1.21775 1.01855 0.89027 0.98801 1.27255 1.10734 1.01611 1.01560 1.84203 1.55241 1.07925 1.10393 0.90696 0.91080 0.91362 0.92861 0.92976 0.91297 0.91399 0.92372 0.92339 0.93388 0.93415 0.96703 0.96682 0.93058 0.80686 0.80519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 9.51 37.15 0.35 -1.08 16 2 C 0.16 1.70 3.24 -27.89 -0.09 1.61 16 3 H 0.09 0.93 7.79 -51.93 -0.40 0.53 16 4 O -0.38 -4.68 9.81 -35.23 -0.35 -5.02 16 5 C 0.06 0.76 5.75 37.16 0.21 0.97 16 6 C -0.12 -1.62 5.58 -26.73 -0.15 -1.77 16 7 C -0.12 -1.92 5.21 -26.73 -0.14 -2.06 16 8 C -0.11 -2.27 5.15 -26.73 -0.14 -2.40 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 11 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 12 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 14 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 18 C 0.05 0.53 6.35 -13.46 -0.09 0.45 16 19 N -0.47 -5.52 10.54 -11.86 -0.13 -5.65 16 20 C 0.04 0.34 11.35 -19.19 -0.22 0.12 16 21 C -0.27 -2.18 11.37 29.12 0.33 -1.85 16 22 S 0.17 1.60 23.01 -107.50 -2.47 -0.87 16 23 H 0.07 0.58 7.87 -51.93 -0.41 0.17 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 26 H 0.05 0.58 7.87 -51.93 -0.41 0.17 16 27 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.18 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.18 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 335.75 15.07 5.06 5.06 Total: -1.00 -31.95 335.75 -8.90 -40.84 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -6.26 Total: -5.21 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -0.47 Total: -19.45 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.61 Total: -32.26 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.35 Total: -5.02 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.47 Total: -0.87 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.95 -8.90 -40.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377188.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.816 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds