Wall clock time and date at job start Mon Mar 30 2020 00:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47305 * 2 1 4 4 O 1.42901 * 109.47145 * 120.00199 * 2 1 3 5 5 C 1.42895 * 113.99948 * 269.99781 * 4 2 1 6 6 C 1.53006 * 109.47036 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47131 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47131 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.47051 * 180.02562 * 9 8 7 11 11 H 1.07995 * 119.99838 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99712 * 180.02562 * 10 9 8 13 13 N 1.31503 * 120.00230 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99499 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47081 * 90.00102 * 14 12 10 16 16 H 1.48496 * 109.47054 * 209.99596 * 14 12 10 17 17 H 1.48495 * 109.47555 * 329.99643 * 14 12 10 18 18 C 1.50699 * 109.47179 * 240.00376 * 2 1 3 19 19 N 1.29028 * 124.91715 * 104.99777 * 18 2 1 20 20 C 1.31784 * 117.12062 * 179.97438 * 19 18 2 21 21 C 1.33634 * 114.50421 * 0.02562 * 20 19 18 22 22 S 1.70986 * 124.91564 * 284.69590 * 18 2 1 23 23 H 1.09004 * 109.47291 * 299.99834 * 1 2 3 24 24 H 1.09001 * 109.47579 * 59.99988 * 1 2 3 25 25 H 1.09008 * 109.47407 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46798 * 60.00190 * 5 4 2 27 27 H 1.08993 * 109.47318 * 299.99656 * 5 4 2 28 28 H 1.09001 * 109.46801 * 300.00369 * 6 5 4 29 29 H 1.09001 * 109.46998 * 59.99965 * 6 5 4 30 30 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 31 31 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 32 32 H 1.09000 * 109.47380 * 300.00763 * 8 7 6 33 33 H 1.09001 * 109.46997 * 60.00426 * 8 7 6 34 34 H 1.09001 * 109.47502 * 299.99847 * 9 8 7 35 35 H 1.08998 * 109.47076 * 60.00779 * 9 8 7 36 36 H 0.96999 * 120.00093 * 180.02562 * 13 12 10 37 37 H 1.08007 * 122.74429 * 180.02562 * 20 19 18 38 38 H 1.08001 * 126.03551 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 0.1828 2.2940 6 6 2.7079 -0.6410 3.4792 7 6 2.9148 0.2760 4.6863 8 6 3.4219 -0.5479 5.8716 9 6 3.6282 0.3689 7.0789 10 6 4.1284 -0.4425 8.2462 11 1 4.2832 -1.5058 8.1379 12 6 4.3873 0.1725 9.4528 13 7 4.1983 1.4672 9.5848 14 14 5.0066 -0.8334 10.8998 15 1 6.4912 -0.8661 10.8807 16 1 4.5415 -0.2155 12.1675 17 1 4.4796 -2.2183 10.8018 18 6 2.0323 -0.7103 -1.2305 19 7 2.5366 -0.1277 -2.2654 20 6 2.9287 -0.9004 -3.2583 21 6 2.7444 -2.2075 -3.0496 22 16 2.0232 -2.4054 -1.4543 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.2537 0.6545 2.5588 27 1 2.9319 0.9511 2.0450 28 1 1.9756 -1.4091 3.7280 29 1 3.6541 -1.1131 3.2146 30 1 3.6467 1.0444 4.4377 31 1 1.9683 0.7476 4.9507 32 1 2.6897 -1.3161 6.1200 33 1 4.3683 -1.0199 5.6075 34 1 4.3604 1.1374 6.8308 35 1 2.6817 0.8405 7.3429 36 1 4.3808 1.8999 10.4336 37 1 3.3634 -0.5093 -4.1664 38 1 2.9969 -3.0023 -3.7358 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224377188.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:01 Heat of formation + Delta-G solvation = -49.703787 kcal Electronic energy + Delta-G solvation = -17248.959793 eV Core-core repulsion = 14409.709093 eV Total energy + Delta-G solvation = -2839.250700 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.76976 -39.34161 -36.95009 -34.96310 -33.50204 -31.74336 -30.35435 -28.18269 -26.57130 -25.15336 -23.39786 -22.50797 -21.72263 -20.93044 -19.19988 -18.41701 -17.39272 -17.04826 -16.87520 -16.51087 -16.00733 -15.68135 -15.23153 -14.70267 -14.46586 -14.32613 -14.01659 -13.78067 -13.32375 -13.25462 -13.03441 -12.80169 -12.67530 -12.39578 -12.30965 -12.18923 -11.93150 -11.80582 -11.33468 -11.29743 -10.98814 -10.77314 -10.64914 -10.54632 -10.37508 -9.89791 -8.19612 -6.30707 -0.31578 0.40893 0.84363 1.39899 1.41430 1.52667 1.77560 2.33427 2.41854 3.13178 3.33431 3.90888 4.00001 4.05361 4.14369 4.18630 4.31293 4.39029 4.43173 4.46590 4.54124 4.71448 4.73609 4.80820 4.89671 4.98909 5.09708 5.14698 5.18204 5.31878 5.32604 5.40903 5.56859 5.79968 5.88274 6.09740 6.27323 6.70540 6.86919 7.38499 8.92229 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.043673 B = 0.002456 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.971139 B =11398.949396 C =11657.915299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.157 3.843 3 H 0.090 0.910 4 O -0.392 6.392 5 C 0.066 3.934 6 C -0.107 4.107 7 C -0.107 4.107 8 C -0.099 4.099 9 C 0.021 3.979 10 C -0.545 4.545 11 H 0.059 0.941 12 C -0.003 4.003 13 N -0.934 5.934 14 Si 0.965 3.035 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.263 1.263 18 C 0.024 3.976 19 N -0.497 5.497 20 C 0.018 3.982 21 C -0.256 4.256 22 S 0.164 5.836 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.048 0.952 34 H -0.010 1.010 35 H -0.008 1.008 36 H 0.264 0.736 37 H 0.200 0.800 38 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.895 -6.488 -26.793 28.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.096 3.904 3 H 0.108 0.892 4 O -0.311 6.311 5 C -0.010 4.010 6 C -0.145 4.145 7 C -0.145 4.145 8 C -0.137 4.137 9 C -0.016 4.016 10 C -0.583 4.583 11 H 0.077 0.923 12 C -0.200 4.200 13 N -0.575 5.575 14 Si 0.790 3.210 15 H -0.198 1.198 16 H -0.206 1.206 17 H -0.187 1.187 18 C -0.252 4.252 19 N -0.214 5.214 20 C -0.133 4.133 21 C -0.395 4.395 22 S 0.418 5.582 23 H 0.100 0.900 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.008 0.992 35 H 0.010 0.990 36 H 0.072 0.928 37 H 0.216 0.784 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -7.131 -6.823 -26.053 27.860 hybrid contribution 0.825 0.546 0.136 0.998 sum -6.306 -6.278 -25.917 27.402 Atomic orbital electron populations 1.22261 0.92150 1.03740 1.04001 1.20365 0.94918 0.94879 0.80214 0.89227 1.87871 1.86920 1.36264 1.20077 1.22658 1.00578 0.92728 0.84989 1.21425 1.01880 0.98543 0.92609 1.21435 1.01145 0.98034 0.93860 1.21443 0.99785 0.98067 0.94412 1.19049 0.94738 0.94685 0.93137 1.21759 1.44069 0.95228 0.97253 0.92309 1.26010 0.95822 0.96114 1.02096 1.70092 1.50163 1.10894 1.26309 0.85444 0.78681 0.78927 0.77987 1.19764 1.20633 1.18738 1.26970 1.03367 0.96004 0.98898 1.66234 1.13136 1.40515 1.01498 1.22213 1.02330 0.89485 0.99245 1.27629 1.08936 1.02073 1.00877 1.84168 1.55394 1.07006 1.11648 0.89969 0.90338 0.91368 0.91429 0.92673 0.91012 0.91762 0.92447 0.91954 0.93042 0.93335 0.99163 0.98952 0.92769 0.78360 0.77423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.51 71.98 0.68 -1.91 16 2 C 0.16 3.21 3.24 29.85 0.10 3.30 16 3 H 0.09 1.80 7.79 -2.39 -0.02 1.78 16 4 O -0.39 -9.26 9.81 -148.98 -1.46 -10.72 16 5 C 0.07 1.52 5.75 71.98 0.41 1.93 16 6 C -0.11 -2.86 5.58 30.60 0.17 -2.69 16 7 C -0.11 -3.50 5.21 30.59 0.16 -3.34 16 8 C -0.10 -4.12 5.15 30.59 0.16 -3.96 16 9 C 0.02 1.13 4.97 29.85 0.15 1.28 16 10 C -0.55 -31.77 9.11 25.60 0.23 -31.53 16 11 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 12 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 13 N -0.93 -57.76 13.29 21.45 0.28 -57.47 16 14 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 15 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 17 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 18 C 0.02 0.52 6.35 88.52 0.56 1.09 16 19 N -0.50 -11.18 10.54 -191.44 -2.02 -13.20 16 20 C 0.02 0.30 11.35 83.65 0.95 1.25 16 21 C -0.26 -3.55 11.37 66.77 0.76 -2.79 16 22 S 0.16 2.93 23.01 -56.49 -1.30 1.63 16 23 H 0.08 1.16 7.87 -2.39 -0.02 1.14 16 24 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.07 1.35 7.87 -2.39 -0.02 1.33 16 27 H 0.05 1.22 8.08 -2.39 -0.02 1.20 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 35 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 36 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 37 H 0.20 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.21 1.41 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -68.58 335.75 3.34 -65.24 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 1.01 Total: 4.70 kcal Atomic # 6 Polarization: -41.89 SS G_CDS: 4.80 Total: -37.09 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: -1.73 Total: -70.67 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -1.46 Total: -10.72 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -1.30 Total: 1.63 kcal Total: -68.58 3.34 -65.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377188.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.541 kcal (2) G-P(sol) polarization free energy of solvation -68.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds