Wall clock time and date at job start Mon Mar 30 2020 00:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47052 * 2 1 4 4 O 1.42902 * 109.46960 * 240.00469 * 2 1 3 5 5 C 1.42898 * 114.00186 * 89.99675 * 4 2 1 6 6 C 1.52997 * 109.47319 * 180.02562 * 5 4 2 7 7 C 1.52992 * 109.47482 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47482 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47452 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47088 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00496 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99572 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00327 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99743 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47371 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47443 * 120.00267 * 14 12 10 17 17 H 1.48504 * 109.46979 * 239.99975 * 14 12 10 18 18 C 1.50698 * 109.47335 * 120.00417 * 2 1 3 19 19 N 1.29034 * 124.91664 * 74.69399 * 18 2 1 20 20 C 1.31780 * 117.12228 * 179.81252 * 19 18 2 21 21 C 1.33636 * 114.50091 * 0.47360 * 20 19 18 22 22 S 1.70972 * 124.91737 * 255.00060 * 18 2 1 23 23 H 1.09006 * 109.47596 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47046 * 299.99764 * 1 2 3 25 25 H 1.09005 * 109.47615 * 59.99772 * 1 2 3 26 26 H 1.09002 * 109.47259 * 300.00293 * 5 4 2 27 27 H 1.09001 * 109.47074 * 60.00315 * 5 4 2 28 28 H 1.09002 * 109.47153 * 300.00307 * 6 5 4 29 29 H 1.08998 * 109.47533 * 59.99936 * 6 5 4 30 30 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 31 31 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 32 32 H 1.09002 * 109.47153 * 300.00216 * 8 7 6 33 33 H 1.09001 * 109.47289 * 60.00300 * 8 7 6 34 34 H 1.09002 * 109.46935 * 300.00125 * 9 8 7 35 35 H 1.09001 * 109.46812 * 59.99783 * 9 8 7 36 36 H 0.97000 * 120.00354 * 179.97438 * 13 12 10 37 37 H 1.08007 * 122.74768 * 180.22368 * 20 19 18 38 38 H 1.08005 * 126.03787 * 179.71254 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.1999 0.1830 -2.2941 6 6 2.7077 -0.6406 -3.4793 7 6 2.9157 0.2766 -4.6860 8 6 3.4240 -0.5469 -5.8710 9 6 3.6326 0.3704 -7.0777 10 6 4.1327 -0.4409 -8.2450 11 1 4.2869 -1.5043 -8.1370 12 6 4.3936 0.1746 -9.4509 13 7 4.2054 1.4695 -9.5826 14 14 5.0128 -0.8311 -10.8981 15 1 5.1396 -2.2544 -10.4937 16 1 4.0525 -0.7200 -12.0253 17 1 6.3393 -0.3185 -11.3257 18 6 2.0323 -0.7105 1.2304 19 7 2.0152 -1.9890 1.4037 20 6 2.4985 -2.4477 2.5407 21 6 2.9390 -1.5029 3.3769 22 16 2.7007 0.0613 2.6018 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.2536 0.6548 -2.5588 27 1 2.9319 0.9514 -2.0451 28 1 3.6539 -1.1127 -3.2149 29 1 1.9756 -1.4087 -3.7283 30 1 1.9697 0.7491 -4.9506 31 1 3.6481 1.0444 -4.4368 32 1 4.3701 -1.0190 -5.6062 33 1 2.6919 -1.3150 -6.1205 34 1 2.6867 0.8429 -7.3427 35 1 4.3649 1.1383 -6.8280 36 1 4.3893 1.9026 -10.4308 37 1 2.5318 -3.5006 2.7789 38 1 3.3653 -1.6689 4.3553 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224377189.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:03 Heat of formation + Delta-G solvation = -30.169351 kcal Electronic energy + Delta-G solvation = -17246.379510 eV Core-core repulsion = 14407.975888 eV Total energy + Delta-G solvation = -2838.403623 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.06881 -38.32194 -35.38398 -33.21029 -32.28274 -30.14621 -29.59226 -26.51478 -25.87188 -23.49775 -22.80538 -21.03893 -20.20336 -19.86242 -18.42492 -16.72839 -16.15115 -15.97734 -15.94351 -15.13565 -14.74030 -14.43204 -14.20843 -13.79105 -13.32862 -13.03254 -12.68510 -12.44750 -12.18590 -11.87030 -11.81973 -11.56788 -11.37313 -10.98852 -10.93907 -10.46339 -10.42806 -10.34912 -9.99644 -9.76367 -9.61357 -9.59157 -9.26316 -9.20283 -8.96483 -8.30868 -5.95984 -3.97758 0.35251 0.96528 1.38206 2.55068 3.33694 3.40931 3.45766 3.56231 3.82258 4.49237 4.51492 4.79406 4.82159 4.87797 5.13937 5.15726 5.22442 5.29095 5.39758 5.47608 5.53680 5.73736 5.74563 5.81197 5.94007 6.10675 6.32029 6.45681 6.54205 6.85557 6.99170 7.07790 7.21793 7.50031 7.73670 7.89095 8.05348 8.48899 9.10070 9.66120 11.15482 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044495 B = 0.002401 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.137146 B =11657.157635 C =11848.067293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.165 3.835 3 H 0.080 0.920 4 O -0.363 6.363 5 C 0.058 3.942 6 C -0.115 4.115 7 C -0.115 4.115 8 C -0.110 4.110 9 C 0.019 3.981 10 C -0.518 4.518 11 H 0.055 0.945 12 C 0.054 3.946 13 N -0.897 5.897 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.052 3.948 19 N -0.449 5.449 20 C 0.039 3.961 21 C -0.260 4.260 22 S 0.122 5.878 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.015 0.985 35 H 0.015 0.985 36 H 0.259 0.741 37 H 0.177 0.823 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.782 -1.419 27.824 28.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.103 3.897 3 H 0.097 0.903 4 O -0.282 6.282 5 C -0.018 4.018 6 C -0.153 4.153 7 C -0.153 4.153 8 C -0.147 4.147 9 C -0.018 4.018 10 C -0.557 4.557 11 H 0.073 0.927 12 C -0.146 4.146 13 N -0.537 5.537 14 Si 0.719 3.281 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.227 4.227 19 N -0.163 5.163 20 C -0.112 4.112 21 C -0.399 4.399 22 S 0.376 5.624 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.194 0.806 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -5.742 -0.783 27.551 28.153 hybrid contribution 0.438 -1.159 -0.532 1.349 sum -5.304 -1.943 27.019 27.603 Atomic orbital electron populations 1.22257 0.93595 1.04021 1.02701 1.20386 0.94241 0.93454 0.81587 0.90251 1.88088 1.86286 1.34842 1.18971 1.22793 0.99560 0.93308 0.86136 1.21584 1.01832 0.98950 0.92933 1.21589 1.01152 0.98169 0.94382 1.21614 0.99390 0.98681 0.95044 1.19117 0.96864 0.94559 0.91227 1.21338 1.43578 0.94714 0.96025 0.92670 1.25040 0.95817 0.94912 0.98845 1.69975 1.49459 1.09045 1.25205 0.86552 0.78454 0.80470 0.82631 1.19737 1.21038 1.21051 1.27064 1.02510 0.92733 1.00399 1.66215 1.17047 1.12195 1.20820 1.21942 0.98972 1.01662 0.88647 1.27137 1.11619 0.94481 1.06657 1.83993 1.56425 1.10815 1.11194 0.90760 0.91538 0.90938 0.93029 0.93254 0.91456 0.91279 0.92372 0.92439 0.93422 0.93374 0.96687 0.96707 0.93131 0.80564 0.80407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.51 37.16 0.35 -1.14 16 2 C 0.17 1.75 3.23 -27.89 -0.09 1.66 16 3 H 0.08 0.68 7.78 -51.93 -0.40 0.27 16 4 O -0.36 -4.94 9.96 -35.23 -0.35 -5.29 16 5 C 0.06 0.73 5.75 37.16 0.21 0.95 16 6 C -0.12 -1.70 5.58 -26.74 -0.15 -1.85 16 7 C -0.12 -1.96 5.21 -26.74 -0.14 -2.10 16 8 C -0.11 -2.32 5.15 -26.73 -0.14 -2.45 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 11 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 12 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 14 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 15 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 C 0.05 0.57 6.28 -13.45 -0.08 0.48 16 19 N -0.45 -5.58 10.53 -11.86 -0.12 -5.70 16 20 C 0.04 0.37 11.35 -19.19 -0.22 0.15 16 21 C -0.26 -1.96 11.37 29.12 0.33 -1.63 16 22 S 0.12 0.99 23.18 -107.50 -2.49 -1.50 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.59 7.87 -51.93 -0.41 0.19 16 26 H 0.05 0.58 7.87 -51.93 -0.41 0.17 16 27 H 0.05 0.57 8.09 -51.93 -0.42 0.15 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.18 1.21 8.06 -52.48 -0.42 0.79 16 38 H 0.18 0.80 8.06 -52.48 -0.42 0.38 16 LS Contribution 335.98 15.07 5.06 5.06 Total: -1.00 -32.92 335.98 -8.92 -41.84 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -6.26 Total: -5.28 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -0.47 Total: -19.46 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.61 Total: -32.42 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.35 Total: -5.29 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.49 Total: -1.50 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.92 -8.92 -41.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377189.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.670 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds