Wall clock time and date at job start Mon Mar 30 2020 00:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47052 * 2 1 4 4 O 1.42902 * 109.46960 * 240.00469 * 2 1 3 5 5 C 1.42898 * 114.00186 * 89.99675 * 4 2 1 6 6 C 1.52997 * 109.47319 * 180.02562 * 5 4 2 7 7 C 1.52992 * 109.47482 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47482 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47452 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47088 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00496 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99572 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00327 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99743 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47371 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47443 * 120.00267 * 14 12 10 17 17 H 1.48504 * 109.46979 * 239.99975 * 14 12 10 18 18 C 1.50698 * 109.47335 * 120.00417 * 2 1 3 19 19 N 1.29034 * 124.91664 * 74.69399 * 18 2 1 20 20 C 1.31780 * 117.12228 * 179.81252 * 19 18 2 21 21 C 1.33636 * 114.50091 * 0.47360 * 20 19 18 22 22 S 1.70972 * 124.91737 * 255.00060 * 18 2 1 23 23 H 1.09006 * 109.47596 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47046 * 299.99764 * 1 2 3 25 25 H 1.09005 * 109.47615 * 59.99772 * 1 2 3 26 26 H 1.09002 * 109.47259 * 300.00293 * 5 4 2 27 27 H 1.09001 * 109.47074 * 60.00315 * 5 4 2 28 28 H 1.09002 * 109.47153 * 300.00307 * 6 5 4 29 29 H 1.08998 * 109.47533 * 59.99936 * 6 5 4 30 30 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 31 31 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 32 32 H 1.09002 * 109.47153 * 300.00216 * 8 7 6 33 33 H 1.09001 * 109.47289 * 60.00300 * 8 7 6 34 34 H 1.09002 * 109.46935 * 300.00125 * 9 8 7 35 35 H 1.09001 * 109.46812 * 59.99783 * 9 8 7 36 36 H 0.97000 * 120.00354 * 179.97438 * 13 12 10 37 37 H 1.08007 * 122.74768 * 180.22368 * 20 19 18 38 38 H 1.08005 * 126.03787 * 179.71254 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.1999 0.1830 -2.2941 6 6 2.7077 -0.6406 -3.4793 7 6 2.9157 0.2766 -4.6860 8 6 3.4240 -0.5469 -5.8710 9 6 3.6326 0.3704 -7.0777 10 6 4.1327 -0.4409 -8.2450 11 1 4.2869 -1.5043 -8.1370 12 6 4.3936 0.1746 -9.4509 13 7 4.2054 1.4695 -9.5826 14 14 5.0128 -0.8311 -10.8981 15 1 5.1396 -2.2544 -10.4937 16 1 4.0525 -0.7200 -12.0253 17 1 6.3393 -0.3185 -11.3257 18 6 2.0323 -0.7105 1.2304 19 7 2.0152 -1.9890 1.4037 20 6 2.4985 -2.4477 2.5407 21 6 2.9390 -1.5029 3.3769 22 16 2.7007 0.0613 2.6018 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.2536 0.6548 -2.5588 27 1 2.9319 0.9514 -2.0451 28 1 3.6539 -1.1127 -3.2149 29 1 1.9756 -1.4087 -3.7283 30 1 1.9697 0.7491 -4.9506 31 1 3.6481 1.0444 -4.4368 32 1 4.3701 -1.0190 -5.6062 33 1 2.6919 -1.3150 -6.1205 34 1 2.6867 0.8429 -7.3427 35 1 4.3649 1.1383 -6.8280 36 1 4.3893 1.9026 -10.4308 37 1 2.5318 -3.5006 2.7789 38 1 3.3653 -1.6689 4.3553 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224377189.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:03 Heat of formation + Delta-G solvation = -49.973595 kcal Electronic energy + Delta-G solvation = -17247.238287 eV Core-core repulsion = 14407.975888 eV Total energy + Delta-G solvation = -2839.262399 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.78752 -39.22519 -36.94201 -34.95837 -33.48813 -31.71815 -30.31073 -28.15441 -26.67265 -25.15339 -23.56805 -22.45414 -21.75608 -20.74658 -19.12359 -18.43619 -17.52257 -17.01929 -16.73936 -16.50601 -16.00802 -15.69579 -15.22727 -14.64225 -14.45260 -14.30586 -14.12583 -13.76799 -13.30931 -13.21660 -13.02659 -12.81895 -12.66329 -12.48171 -12.30535 -12.16524 -11.93529 -11.77435 -11.34554 -11.29955 -10.99749 -10.80762 -10.55518 -10.48729 -10.35354 -9.88479 -8.20195 -6.31120 -0.31313 0.32321 0.73900 1.39480 1.39670 1.53443 1.85012 2.40853 2.70728 3.12490 3.13914 3.76807 3.99653 4.09519 4.16692 4.19552 4.31661 4.38430 4.43070 4.46580 4.53729 4.70311 4.73918 4.82266 4.89198 4.98600 5.09205 5.14423 5.24614 5.30593 5.32086 5.40178 5.56254 5.79253 5.87676 6.19245 6.27242 6.82726 6.86330 7.38012 8.91812 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044495 B = 0.002401 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.137146 B =11657.157635 C =11848.067293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.157 3.843 3 H 0.100 0.900 4 O -0.389 6.389 5 C 0.062 3.938 6 C -0.108 4.108 7 C -0.105 4.105 8 C -0.101 4.101 9 C 0.022 3.978 10 C -0.545 4.545 11 H 0.057 0.943 12 C -0.002 4.002 13 N -0.933 5.933 14 Si 0.965 3.035 15 H -0.264 1.264 16 H -0.276 1.276 17 H -0.277 1.277 18 C 0.020 3.980 19 N -0.488 5.488 20 C 0.013 3.987 21 C -0.247 4.247 22 S 0.161 5.839 23 H 0.053 0.947 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.048 0.952 34 H -0.007 1.007 35 H -0.008 1.008 36 H 0.264 0.736 37 H 0.193 0.807 38 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.493 -1.570 29.068 29.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.096 3.904 3 H 0.118 0.882 4 O -0.308 6.308 5 C -0.014 4.014 6 C -0.145 4.145 7 C -0.143 4.143 8 C -0.138 4.138 9 C -0.015 4.015 10 C -0.583 4.583 11 H 0.075 0.925 12 C -0.200 4.200 13 N -0.574 5.574 14 Si 0.790 3.210 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.202 1.202 18 C -0.257 4.257 19 N -0.204 5.204 20 C -0.137 4.137 21 C -0.386 4.386 22 S 0.415 5.585 23 H 0.072 0.928 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.011 0.989 35 H 0.011 0.989 36 H 0.073 0.927 37 H 0.210 0.790 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -5.460 -0.936 28.809 29.337 hybrid contribution 0.364 -1.083 -0.830 1.413 sum -5.096 -2.019 27.979 28.511 Atomic orbital electron populations 1.22220 0.92796 1.03077 1.03966 1.20654 0.95002 0.94191 0.80532 0.88203 1.88037 1.86725 1.36048 1.19991 1.22687 1.00553 0.92821 0.85339 1.21412 1.01553 0.98553 0.93026 1.21425 1.01217 0.97970 0.93654 1.21454 0.99667 0.98096 0.94598 1.19045 0.94809 0.94661 0.93016 1.21775 1.44026 0.95149 0.97327 0.92481 1.26001 0.95819 0.96125 1.02049 1.70097 1.50204 1.10806 1.26277 0.85395 0.78030 0.79016 0.78589 1.18776 1.20204 1.20218 1.27175 1.03879 0.92982 1.01683 1.66202 1.18224 1.13382 1.22586 1.22258 0.99954 1.02977 0.88527 1.27575 1.09784 0.93826 1.07395 1.83790 1.55012 1.10364 1.09361 0.92751 0.89663 0.90229 0.91614 0.92017 0.92092 0.91750 0.91906 0.92066 0.93438 0.93333 0.98900 0.98942 0.92737 0.79029 0.77238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.51 71.98 0.68 -2.07 16 2 C 0.16 3.17 3.23 29.85 0.10 3.26 16 3 H 0.10 1.52 7.78 -2.39 -0.02 1.50 16 4 O -0.39 -10.33 9.96 -148.98 -1.48 -11.81 16 5 C 0.06 1.48 5.75 71.98 0.41 1.90 16 6 C -0.11 -3.10 5.58 30.59 0.17 -2.93 16 7 C -0.11 -3.52 5.21 30.59 0.16 -3.36 16 8 C -0.10 -4.28 5.15 30.60 0.16 -4.12 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.54 -32.07 9.11 25.60 0.23 -31.84 16 11 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 12 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 13 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16 14 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 15 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 18 C 0.02 0.43 6.28 88.52 0.56 0.98 16 19 N -0.49 -12.02 10.53 -191.45 -2.02 -14.03 16 20 C 0.01 0.24 11.35 83.66 0.95 1.19 16 21 C -0.25 -3.18 11.37 66.78 0.76 -2.42 16 22 S 0.16 2.30 23.18 -56.49 -1.31 0.99 16 23 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 24 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.08 1.20 7.87 -2.38 -0.02 1.18 16 26 H 0.07 1.37 7.87 -2.39 -0.02 1.35 16 27 H 0.06 1.31 8.09 -2.39 -0.02 1.29 16 28 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 36 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.19 2.48 8.06 -2.91 -0.02 2.45 16 38 H 0.21 1.17 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -71.47 335.98 3.30 -68.16 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 1.01 Total: 4.70 kcal Atomic # 6 Polarization: -42.55 SS G_CDS: 4.79 Total: -37.76 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -1.73 Total: -71.54 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -1.48 Total: -11.81 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.31 Total: 0.99 kcal Total: -71.47 3.30 -68.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377189.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.188 kcal (2) G-P(sol) polarization free energy of solvation -71.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds