Wall clock time and date at job start Mon Mar 30 2020 01:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99737 * 2 1 4 4 H 1.48500 * 109.46923 * 269.99820 * 3 2 1 5 5 H 1.48499 * 109.47310 * 29.99765 * 3 2 1 6 6 H 1.48498 * 109.47275 * 149.99479 * 3 2 1 7 7 C 1.37877 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00086 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99999 * 179.97438 * 7 2 1 10 10 C 1.53938 * 113.73166 * 81.23960 * 9 7 2 11 11 N 1.48298 * 86.06322 * 138.12698 * 10 9 7 12 12 C 1.46893 * 111.00614 * 222.41829 * 11 10 9 13 13 C 1.50698 * 109.47340 * 284.05657 * 12 11 10 14 14 C 1.36330 * 120.75048 * 105.07244 * 13 12 11 15 15 N 1.32580 * 121.90353 * 179.75228 * 14 13 12 16 16 C 1.31352 * 122.87562 * 0.54678 * 15 14 13 17 17 C 1.40234 * 119.74248 * 359.73246 * 16 15 14 18 18 C 1.40267 * 122.87309 * 180.02562 * 17 16 15 19 19 N 1.31327 * 119.73744 * 179.97438 * 18 17 16 20 20 C 1.32613 * 122.88512 * 0.02562 * 19 18 17 21 21 C 1.36295 * 121.90432 * 0.02562 * 20 19 18 22 22 C 1.40341 * 120.74819 * 285.35800 * 13 12 11 23 23 C 1.47964 * 90.75425 * 335.31052 * 11 10 9 24 24 H 0.96992 * 120.00577 * 0.02562 * 1 2 3 25 25 H 1.08996 * 112.93723 * 309.67665 * 9 7 2 26 26 H 1.08998 * 113.76001 * 252.50777 * 10 9 7 27 27 H 1.09008 * 113.75724 * 23.86123 * 10 9 7 28 28 H 1.08999 * 109.47427 * 44.05964 * 12 11 10 29 29 H 1.09003 * 109.46804 * 164.05920 * 12 11 10 30 30 H 1.08004 * 119.04531 * 0.02867 * 14 13 12 31 31 H 1.07998 * 120.12835 * 179.75017 * 16 15 14 32 32 H 1.07996 * 120.13285 * 0.02562 * 18 17 16 33 33 H 1.07992 * 119.04734 * 180.02562 * 20 19 18 34 34 H 1.07996 * 120.74679 * 180.02562 * 21 20 19 35 35 H 1.09000 * 113.75512 * 270.36875 * 23 11 10 36 36 H 1.08997 * 113.85737 * 139.01214 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5117 -1.1940 0.0000 10 6 4.1317 -0.9784 1.3923 11 7 5.0991 -2.0363 1.0128 12 6 5.3318 -2.9622 2.1291 13 6 6.2298 -2.3069 3.1465 14 6 5.7250 -1.8392 4.3234 15 7 6.4947 -1.2634 5.2364 16 6 7.7869 -1.0919 5.0742 17 6 8.4046 -1.5330 3.8951 18 6 9.7783 -1.3841 3.6536 19 7 10.2927 -1.8207 2.5269 20 6 9.5679 -2.4074 1.5841 21 6 8.2254 -2.5984 1.7218 22 6 7.6037 -2.1590 2.9014 23 6 4.1312 -2.6023 0.0473 24 1 -0.4850 0.8399 -0.0004 25 1 3.9361 -0.5536 -0.7732 26 1 4.5830 0.0050 1.5247 27 1 3.4735 -1.2596 2.2145 28 1 4.3797 -3.2163 2.5950 29 1 5.8071 -3.8693 1.7558 30 1 4.6681 -1.9447 4.5194 31 1 8.3713 -0.6132 5.8461 32 1 10.4106 -0.9129 4.3916 33 1 10.0554 -2.7435 0.6809 34 1 7.6532 -3.0788 0.9420 35 1 3.4730 -3.3574 0.4769 36 1 4.5806 -2.9162 -0.8948 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232648160.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:55 Heat of formation + Delta-G solvation = 100.780038 kcal Electronic energy + Delta-G solvation = -19764.033066 eV Core-core repulsion = 16828.156634 eV Total energy + Delta-G solvation = -2935.876432 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.30799 -39.08176 -38.14069 -34.28262 -32.54843 -31.91818 -31.02288 -29.05675 -26.11012 -25.32282 -24.64174 -24.24310 -22.76423 -20.88120 -18.82533 -18.42582 -17.47359 -17.18697 -16.98939 -15.46540 -15.32128 -14.75329 -14.69478 -14.48329 -14.21366 -14.16805 -13.60629 -13.02655 -12.95204 -12.68044 -12.28737 -12.02521 -11.90957 -11.66936 -11.07140 -10.57081 -10.54349 -10.09895 -10.05897 -9.92994 -9.66036 -9.55441 -9.31143 -9.23013 -8.63816 -8.30047 -8.15506 -6.16105 -4.17051 0.13397 0.71651 1.72840 3.05398 3.25269 3.34410 3.37964 3.93882 4.16778 4.27083 4.36903 4.43025 4.51603 4.61583 4.67510 4.76806 5.05312 5.12079 5.19567 5.42674 5.51168 5.58615 5.60136 5.67210 5.78031 5.82667 6.02026 6.19931 6.28826 6.33959 6.38106 6.43408 6.52749 6.65791 6.85539 7.27744 7.62233 7.68256 7.75513 7.85042 8.41688 8.86394 9.46741 10.96373 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024658 B = 0.005066 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.265021 B = 5526.012176 C = 5766.178431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.075 3.925 3 Si 0.872 3.128 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.256 1.256 7 C -0.515 4.515 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.005 4.005 11 N -0.485 5.485 12 C 0.060 3.940 13 C -0.100 4.100 14 C 0.093 3.907 15 N -0.484 5.484 16 C 0.153 3.847 17 C -0.175 4.175 18 C 0.158 3.842 19 N -0.492 5.492 20 C 0.081 3.919 21 C -0.133 4.133 22 C 0.016 3.984 23 C 0.013 3.987 24 H 0.265 0.735 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.156 0.844 31 H 0.167 0.833 32 H 0.166 0.834 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.064 0.936 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.218 -4.710 7.459 19.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.127 4.127 3 Si 0.699 3.301 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.180 1.180 7 C -0.553 4.553 8 H 0.092 0.908 9 C -0.020 4.020 10 C -0.133 4.133 11 N -0.207 5.207 12 C -0.068 4.068 13 C -0.102 4.102 14 C -0.051 4.051 15 N -0.191 5.191 16 C -0.021 4.021 17 C -0.179 4.179 18 C -0.016 4.016 19 N -0.200 5.200 20 C -0.063 4.063 21 C -0.153 4.153 22 C 0.005 3.995 23 C -0.115 4.115 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.173 0.827 31 H 0.184 0.816 32 H 0.183 0.817 33 H 0.172 0.828 34 H 0.165 0.835 35 H 0.083 0.917 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 18.043 -4.180 7.670 20.046 hybrid contribution -1.025 0.297 -0.265 1.100 sum 17.018 -3.883 7.406 18.961 Atomic orbital electron populations 1.69902 1.06396 1.27167 1.50029 1.24988 0.94609 0.99173 0.93942 0.86949 0.80858 0.83551 0.78728 1.20296 1.21439 1.18029 1.20952 0.88299 0.94522 1.51542 0.90777 1.20721 0.96448 0.92332 0.92456 1.24534 0.92611 0.94815 1.01387 1.68687 1.35017 1.08137 1.08901 1.21498 0.97156 0.96133 0.92049 1.20562 0.93276 0.99804 0.96574 1.22296 0.99955 0.93602 0.89296 1.67471 1.06288 1.13368 1.31974 1.23117 0.90759 0.93930 0.94287 1.20000 0.96673 1.03687 0.97533 1.23094 0.90851 0.93665 0.93999 1.67432 1.40689 1.09990 1.01851 1.22290 0.91196 0.95402 0.97417 1.21951 0.95844 1.00226 0.97241 1.18087 0.93222 0.94505 0.93651 1.23896 0.92688 0.99157 0.95782 0.92542 0.92989 0.91589 0.91513 0.92586 0.90172 0.82717 0.81626 0.81663 0.82805 0.83507 0.91725 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.96 55.43 0.77 -25.99 16 2 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.87 21.03 27.08 -169.99 -4.60 16.43 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.26 -5.89 5.27 56.52 0.30 -5.60 16 7 C -0.52 -13.83 9.33 -34.44 -0.32 -14.15 16 8 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 9 C 0.00 0.00 2.89 -90.84 -0.26 -0.27 16 10 C 0.00 -0.10 6.29 -2.57 -0.02 -0.11 16 11 N -0.48 -8.52 6.22 -239.48 -1.49 -10.01 16 12 C 0.06 0.89 4.15 -4.98 -0.02 0.87 16 13 C -0.10 -1.45 5.11 -104.52 -0.53 -1.98 16 14 C 0.09 1.35 10.73 -17.92 -0.19 1.16 16 15 N -0.48 -6.78 10.29 -13.15 -0.14 -6.92 16 16 C 0.15 1.75 11.09 -17.01 -0.19 1.56 16 17 C -0.17 -2.14 5.74 -106.88 -0.61 -2.76 16 18 C 0.16 1.68 11.09 -17.01 -0.19 1.49 16 19 N -0.49 -6.02 10.29 -13.15 -0.14 -6.15 16 20 C 0.08 0.95 11.07 -17.91 -0.20 0.75 16 21 C -0.13 -1.69 9.45 -39.47 -0.37 -2.07 16 22 C 0.02 0.22 5.75 -106.79 -0.61 -0.40 16 23 C 0.01 0.24 7.54 -2.76 -0.02 0.22 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.05 1.20 7.20 -51.93 -0.37 0.83 16 26 H 0.07 1.41 6.82 -51.93 -0.35 1.06 16 27 H 0.07 1.38 7.65 -51.92 -0.40 0.99 16 28 H 0.06 0.83 7.49 -51.93 -0.39 0.44 16 29 H 0.08 1.05 7.51 -51.93 -0.39 0.66 16 30 H 0.16 2.09 7.98 -52.48 -0.42 1.67 16 31 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.15 1.78 7.06 -52.49 -0.37 1.41 16 35 H 0.06 1.19 7.83 -51.93 -0.41 0.79 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 301.24 15.07 4.54 4.54 Total: -1.00 -31.13 301.24 -9.14 -40.28 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -4.45 Total: 1.50 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -3.64 Total: -13.67 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.99 Total: -49.07 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.60 Total: 16.43 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.13 -9.14 -40.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232648160.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.059 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds