Wall clock time and date at job start Mon Mar 30 2020 01:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99737 * 2 1 4 4 H 1.48500 * 109.46923 * 269.99820 * 3 2 1 5 5 H 1.48499 * 109.47310 * 29.99765 * 3 2 1 6 6 H 1.48498 * 109.47275 * 149.99479 * 3 2 1 7 7 C 1.37877 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00086 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99999 * 179.97438 * 7 2 1 10 10 C 1.53938 * 113.73166 * 81.23960 * 9 7 2 11 11 N 1.48298 * 86.06322 * 138.12698 * 10 9 7 12 12 C 1.46893 * 111.00614 * 222.41829 * 11 10 9 13 13 C 1.50698 * 109.47340 * 284.05657 * 12 11 10 14 14 C 1.36330 * 120.75048 * 105.07244 * 13 12 11 15 15 N 1.32580 * 121.90353 * 179.75228 * 14 13 12 16 16 C 1.31352 * 122.87562 * 0.54678 * 15 14 13 17 17 C 1.40234 * 119.74248 * 359.73246 * 16 15 14 18 18 C 1.40267 * 122.87309 * 180.02562 * 17 16 15 19 19 N 1.31327 * 119.73744 * 179.97438 * 18 17 16 20 20 C 1.32613 * 122.88512 * 0.02562 * 19 18 17 21 21 C 1.36295 * 121.90432 * 0.02562 * 20 19 18 22 22 C 1.40341 * 120.74819 * 285.35800 * 13 12 11 23 23 C 1.47964 * 90.75425 * 335.31052 * 11 10 9 24 24 H 0.96992 * 120.00577 * 0.02562 * 1 2 3 25 25 H 1.08996 * 112.93723 * 309.67665 * 9 7 2 26 26 H 1.08998 * 113.76001 * 252.50777 * 10 9 7 27 27 H 1.09008 * 113.75724 * 23.86123 * 10 9 7 28 28 H 1.08999 * 109.47427 * 44.05964 * 12 11 10 29 29 H 1.09003 * 109.46804 * 164.05920 * 12 11 10 30 30 H 1.08004 * 119.04531 * 0.02867 * 14 13 12 31 31 H 1.07998 * 120.12835 * 179.75017 * 16 15 14 32 32 H 1.07996 * 120.13285 * 0.02562 * 18 17 16 33 33 H 1.07992 * 119.04734 * 180.02562 * 20 19 18 34 34 H 1.07996 * 120.74679 * 180.02562 * 21 20 19 35 35 H 1.09000 * 113.75512 * 270.36875 * 23 11 10 36 36 H 1.08997 * 113.85737 * 139.01214 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5117 -1.1940 0.0000 10 6 4.1317 -0.9784 1.3923 11 7 5.0991 -2.0363 1.0128 12 6 5.3318 -2.9622 2.1291 13 6 6.2298 -2.3069 3.1465 14 6 5.7250 -1.8392 4.3234 15 7 6.4947 -1.2634 5.2364 16 6 7.7869 -1.0919 5.0742 17 6 8.4046 -1.5330 3.8951 18 6 9.7783 -1.3841 3.6536 19 7 10.2927 -1.8207 2.5269 20 6 9.5679 -2.4074 1.5841 21 6 8.2254 -2.5984 1.7218 22 6 7.6037 -2.1590 2.9014 23 6 4.1312 -2.6023 0.0473 24 1 -0.4850 0.8399 -0.0004 25 1 3.9361 -0.5536 -0.7732 26 1 4.5830 0.0050 1.5247 27 1 3.4735 -1.2596 2.2145 28 1 4.3797 -3.2163 2.5950 29 1 5.8071 -3.8693 1.7558 30 1 4.6681 -1.9447 4.5194 31 1 8.3713 -0.6132 5.8461 32 1 10.4106 -0.9129 4.3916 33 1 10.0554 -2.7435 0.6809 34 1 7.6532 -3.0788 0.9420 35 1 3.4730 -3.3574 0.4769 36 1 4.5806 -2.9162 -0.8948 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232648160.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:55 Heat of formation + Delta-G solvation = 78.642060 kcal Electronic energy + Delta-G solvation = -19764.993040 eV Core-core repulsion = 16828.156634 eV Total energy + Delta-G solvation = -2936.836406 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.25894 -40.54699 -39.10987 -35.47500 -34.47934 -32.85401 -32.11254 -30.48944 -27.65953 -26.90523 -25.66334 -25.19907 -24.17252 -22.04591 -20.45218 -19.41606 -19.10651 -18.43400 -18.00869 -16.93090 -16.57609 -16.10855 -15.92654 -15.47879 -15.39006 -15.24669 -15.07535 -14.67148 -14.19517 -13.92398 -13.50470 -13.41742 -13.26629 -12.95854 -12.76327 -12.31966 -11.89710 -11.79778 -11.65044 -11.24167 -11.09426 -10.95669 -10.71043 -10.53217 -10.24606 -9.74407 -9.22150 -8.31958 -6.36270 -0.76489 -0.24031 0.80549 1.33277 1.36737 1.47267 2.12167 2.33813 2.95537 3.02697 3.21092 3.31384 3.45077 3.50213 3.65582 3.77595 3.82009 4.01346 4.08426 4.15005 4.30318 4.47348 4.50901 4.63111 4.66134 4.67396 4.75075 4.77231 4.86822 4.89392 4.99018 5.26899 5.37409 5.46134 5.53476 5.62833 5.63477 6.16736 6.27063 6.69972 6.85296 6.94121 7.30691 8.84095 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024658 B = 0.005066 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.265021 B = 5526.012176 C = 5766.178431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.019 3.981 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.239 1.239 7 C -0.514 4.514 8 H 0.037 0.963 9 C -0.016 4.016 10 C 0.006 3.994 11 N -0.473 5.473 12 C 0.065 3.935 13 C -0.120 4.120 14 C 0.085 3.915 15 N -0.512 5.512 16 C 0.169 3.831 17 C -0.189 4.189 18 C 0.171 3.829 19 N -0.511 5.511 20 C 0.086 3.914 21 C -0.152 4.152 22 C 0.001 3.999 23 C 0.024 3.976 24 H 0.266 0.734 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.099 0.901 30 H 0.152 0.848 31 H 0.210 0.790 32 H 0.208 0.792 33 H 0.177 0.823 34 H 0.148 0.852 35 H 0.062 0.938 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.566 -4.146 8.232 22.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.197 1.197 5 H -0.216 1.216 6 H -0.162 1.162 7 C -0.552 4.552 8 H 0.056 0.944 9 C -0.035 4.035 10 C -0.123 4.123 11 N -0.195 5.195 12 C -0.063 4.063 13 C -0.122 4.122 14 C -0.059 4.059 15 N -0.220 5.220 16 C -0.005 4.005 17 C -0.193 4.193 18 C -0.002 4.002 19 N -0.220 5.220 20 C -0.057 4.057 21 C -0.172 4.172 22 C -0.009 4.009 23 C -0.104 4.104 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.117 0.883 30 H 0.169 0.831 31 H 0.227 0.773 32 H 0.225 0.775 33 H 0.194 0.806 34 H 0.165 0.835 35 H 0.080 0.920 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 21.412 -3.636 8.443 23.302 hybrid contribution -1.984 0.039 -0.460 2.037 sum 19.428 -3.598 7.982 21.310 Atomic orbital electron populations 1.70043 1.08235 1.28091 1.52339 1.25809 0.95252 1.02892 0.93902 0.85950 0.80123 0.79010 0.79044 1.19664 1.21587 1.16196 1.21209 0.90790 0.93005 1.50173 0.94441 1.20760 0.93576 0.95367 0.93791 1.24241 0.92905 0.95628 0.99505 1.68619 1.33276 1.07962 1.09678 1.21465 0.97419 0.96154 0.91272 1.20451 0.93761 1.01368 0.96646 1.22353 1.00185 0.93719 0.89679 1.67528 1.07542 1.14733 1.32161 1.23847 0.90095 0.91850 0.94671 1.20267 0.97483 1.04007 0.97575 1.23766 0.90491 0.91890 0.94027 1.67554 1.40926 1.10899 1.02583 1.22677 0.90914 0.94119 0.98003 1.21991 0.96409 1.01518 0.97256 1.18345 0.93185 0.94773 0.94646 1.23794 0.92621 0.96885 0.97143 0.92525 0.93054 0.92183 0.92384 0.92990 0.88297 0.83081 0.77348 0.77544 0.80629 0.83473 0.91956 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.25 13.96 21.45 0.30 -57.95 16 2 C 0.02 1.09 5.47 84.65 0.46 1.56 16 3 Si 0.93 43.65 27.08 68.60 1.86 45.51 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.24 -10.37 5.27 99.48 0.52 -9.84 16 7 C -0.51 -28.24 9.33 25.60 0.24 -28.00 16 8 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 9 C -0.02 -0.69 2.89 -10.89 -0.03 -0.72 16 10 C 0.01 0.26 6.29 86.34 0.54 0.80 16 11 N -0.47 -16.04 6.22 -911.57 -5.67 -21.71 16 12 C 0.07 1.87 4.15 85.56 0.35 2.22 16 13 C -0.12 -3.36 5.11 -19.80 -0.10 -3.46 16 14 C 0.08 2.40 10.73 84.13 0.90 3.31 16 15 N -0.51 -13.50 10.29 -195.52 -2.01 -15.51 16 16 C 0.17 3.34 11.09 85.25 0.95 4.28 16 17 C -0.19 -4.08 5.74 -21.33 -0.12 -4.21 16 18 C 0.17 2.98 11.09 85.26 0.95 3.93 16 19 N -0.51 -10.85 10.29 -195.52 -2.01 -12.87 16 20 C 0.09 1.80 11.07 84.12 0.93 2.73 16 21 C -0.15 -3.57 9.45 22.34 0.21 -3.36 16 22 C 0.00 0.02 5.75 -21.27 -0.12 -0.10 16 23 C 0.02 0.86 7.54 86.41 0.65 1.51 16 24 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 25 H 0.05 2.31 7.20 -2.39 -0.02 2.29 16 26 H 0.06 2.49 6.82 -2.39 -0.02 2.48 16 27 H 0.06 2.42 7.65 -2.38 -0.02 2.41 16 28 H 0.05 1.53 7.49 -2.39 -0.02 1.51 16 29 H 0.10 2.44 7.51 -2.39 -0.02 2.42 16 30 H 0.15 4.15 7.98 -2.91 -0.02 4.13 16 31 H 0.21 2.08 8.06 -2.91 -0.02 2.05 16 32 H 0.21 1.68 8.06 -2.91 -0.02 1.65 16 33 H 0.18 2.70 8.06 -2.91 -0.02 2.68 16 34 H 0.15 3.32 7.06 -2.91 -0.02 3.30 16 35 H 0.06 2.28 7.83 -2.39 -0.02 2.26 16 36 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -68.50 301.24 -0.82 -69.33 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.90 Total: 12.72 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 5.81 Total: -19.52 kcal Atomic # 7 Polarization: -98.64 SS G_CDS: -9.40 Total: -108.04 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.86 Total: 45.51 kcal Total: -68.50 -0.82 -69.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232648160.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.971 kcal (2) G-P(sol) polarization free energy of solvation -68.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds