Wall clock time and date at job start Mon Mar 30 2020 00:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.36034 * 117.00066 * 2 1 4 4 C 1.38625 * 120.00818 * 359.97438 * 3 2 1 5 5 C 1.38165 * 120.02586 * 179.97438 * 4 3 2 6 6 C 1.38706 * 120.03840 * 359.97438 * 5 4 3 7 7 O 1.35981 * 119.99393 * 180.02562 * 6 5 4 8 8 C 1.42906 * 116.99671 * 0.02562 * 7 6 5 9 9 C 1.38680 * 120.01239 * 0.04652 * 6 5 4 10 10 C 1.50701 * 120.01169 * 179.97438 * 9 6 5 11 11 N 1.46496 * 109.47494 * 89.99319 * 10 9 6 12 12 C 1.46502 * 120.00354 * 270.00668 * 11 10 9 13 13 C 1.36943 * 119.99825 * 89.99820 * 11 10 9 14 14 H 1.07994 * 119.99718 * 22.17852 * 13 11 10 15 15 C 1.38813 * 119.99913 * 202.17293 * 13 11 10 16 16 N 1.31622 * 120.00086 * 11.20313 * 15 13 11 17 17 Si 1.86794 * 119.99965 * 191.19889 * 15 13 11 18 18 H 1.48506 * 109.47162 * 90.00133 * 17 15 13 19 19 H 1.48504 * 109.47280 * 210.00298 * 17 15 13 20 20 H 1.48499 * 109.47061 * 330.00453 * 17 15 13 21 21 C 1.38313 * 119.97683 * 359.69847 * 9 6 5 22 22 F 1.35103 * 120.02028 * 180.30639 * 21 9 6 23 23 H 1.08998 * 109.46789 * 60.00230 * 1 2 3 24 24 H 1.09000 * 109.46765 * 300.00375 * 1 2 3 25 25 H 1.09000 * 109.47006 * 180.02562 * 1 2 3 26 26 H 1.08008 * 119.98760 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.98391 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.46745 * 299.99298 * 8 7 6 29 29 H 1.08991 * 109.47343 * 59.99911 * 8 7 6 30 30 H 1.09003 * 109.46352 * 179.97438 * 8 7 6 31 31 H 1.08999 * 109.47039 * 209.99496 * 10 9 6 32 32 H 1.09004 * 109.46710 * 329.99110 * 10 9 6 33 33 H 1.08999 * 109.47444 * 94.59107 * 12 11 10 34 34 H 1.08997 * 109.46908 * 214.59932 * 12 11 10 35 35 H 1.09004 * 109.46576 * 334.58911 * 12 11 10 36 36 H 0.96996 * 119.99812 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0467 1.2121 0.0000 4 6 1.2919 2.3748 -0.0005 5 6 1.9188 3.6060 0.0000 6 6 3.3038 3.6800 0.0016 7 8 3.9199 4.8922 0.0027 8 6 3.0786 6.0474 0.0026 9 6 4.0605 2.5178 0.0017 10 6 5.5654 2.5981 0.0029 11 7 6.0521 2.6238 1.3844 12 6 6.2276 3.9035 2.0756 13 6 6.3427 1.4515 2.0298 14 1 6.5637 0.5615 1.4594 15 6 6.3534 1.4072 3.4172 16 7 5.8744 2.4175 4.1116 17 14 7.0474 -0.0864 4.2986 18 1 8.4989 0.1123 4.5415 19 1 6.3481 -0.2644 5.5966 20 1 6.8469 -1.2944 3.4586 21 6 3.4336 1.2849 0.0065 22 9 4.1699 0.1522 0.0129 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2133 2.3182 -0.0005 27 1 1.3300 4.5115 -0.0008 28 1 2.4501 6.0391 -0.8880 29 1 2.4487 6.0382 0.8920 30 1 3.6955 6.9460 0.0040 31 1 5.9760 1.7290 -0.5109 32 1 5.8811 3.5064 -0.5105 33 1 5.3324 4.1294 2.6550 34 1 7.0866 3.8407 2.7436 35 1 6.3946 4.6925 1.3423 36 1 5.8816 2.3864 5.0810 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237583522.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:14 Heat of formation + Delta-G solvation = -60.338640 kcal Electronic energy + Delta-G solvation = -21504.207238 eV Core-core repulsion = 18098.282200 eV Total energy + Delta-G solvation = -3405.925038 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.01284 -39.95199 -38.63372 -36.21119 -35.13706 -31.88216 -30.07576 -29.29077 -27.34215 -26.64149 -25.88759 -25.44561 -22.03353 -21.63891 -20.31284 -17.95433 -17.34326 -16.95878 -16.46317 -15.82350 -15.42195 -15.27182 -14.76419 -14.49398 -14.42459 -14.24001 -13.57835 -13.41265 -13.09982 -12.55169 -12.35092 -12.01856 -11.87116 -11.54475 -11.33858 -11.33414 -11.04834 -10.81849 -10.54781 -10.44106 -10.24340 -10.04107 -9.89378 -9.80413 -8.48143 -8.15883 -7.33096 -6.71097 -5.66579 -3.08483 1.58541 1.80639 3.43669 3.46164 3.50174 3.53560 3.66012 4.02371 4.58890 4.82447 4.96868 5.16375 5.23681 5.26808 5.34103 5.39569 5.50899 5.51523 5.63254 5.66569 5.81375 5.91355 5.99292 6.24712 6.42219 6.54408 6.73099 6.81164 6.95624 7.07833 7.49595 7.58656 7.83365 7.86613 7.91835 8.45414 9.30395 9.91542 10.40818 11.37424 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.015516 B = 0.008433 C = 0.006224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.129695 B = 3319.475721 C = 4497.975289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.313 6.313 3 C 0.053 3.947 4 C -0.164 4.164 5 C -0.188 4.188 6 C 0.126 3.874 7 O -0.302 6.302 8 C 0.030 3.970 9 C -0.112 4.112 10 C 0.189 3.811 11 N -0.584 5.584 12 C 0.169 3.831 13 C -0.246 4.246 14 H 0.073 0.927 15 C 0.001 3.999 16 N -0.905 5.905 17 Si 0.905 3.095 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.277 1.277 21 C 0.123 3.877 22 F -0.121 7.121 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.095 0.905 26 H 0.129 0.871 27 H 0.127 0.873 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.027 0.973 34 H 0.043 0.957 35 H 0.002 0.998 36 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.596 3.945 -9.553 14.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.227 6.227 3 C 0.007 3.993 4 C -0.183 4.183 5 C -0.207 4.207 6 C 0.080 3.920 7 O -0.215 6.215 8 C -0.065 4.065 9 C -0.118 4.118 10 C 0.061 3.939 11 N -0.303 5.303 12 C 0.025 3.975 13 C -0.375 4.375 14 H 0.091 0.909 15 C -0.197 4.197 16 N -0.549 5.549 17 Si 0.735 3.265 18 H -0.214 1.214 19 H -0.218 1.218 20 H -0.202 1.202 21 C 0.102 3.898 22 F -0.100 7.100 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.147 0.853 27 H 0.145 0.855 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.021 0.979 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.203 3.795 -9.323 14.332 hybrid contribution -0.475 -0.711 0.868 1.219 sum -10.677 3.084 -8.454 13.964 Atomic orbital electron populations 1.22972 0.79145 1.03444 1.00912 1.86130 1.20685 1.26190 1.89730 1.18849 0.90800 0.85181 1.04442 1.20575 0.99228 0.91036 1.07480 1.20872 0.93222 0.97985 1.08671 1.18300 0.89957 0.85134 0.98589 1.86144 1.34760 1.11783 1.88852 1.22965 0.95804 0.87056 1.00678 1.20419 1.00949 0.88204 1.02224 1.19823 0.85035 1.00240 0.88759 1.44234 1.72010 1.03862 1.10212 1.20784 1.00162 0.83611 0.92954 1.19369 1.39340 0.89726 0.89100 0.90885 1.25076 1.00114 0.97668 0.96870 1.70095 1.48161 1.31108 1.05553 0.86228 0.78508 0.82681 0.79097 1.21439 1.21796 1.20235 1.16339 0.85066 0.82609 1.05811 1.91490 1.76667 1.48083 1.93737 0.93069 0.92940 0.88613 0.85281 0.85523 0.93318 0.93005 0.88621 0.92488 0.92165 0.95512 0.93801 0.97935 0.93826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.31 -5.53 10.36 -19.85 -0.21 -5.73 16 3 C 0.05 1.00 6.69 -39.20 -0.26 0.74 16 4 C -0.16 -2.61 9.03 -39.47 -0.36 -2.97 16 5 C -0.19 -3.03 9.03 -39.44 -0.36 -3.39 16 6 C 0.13 2.39 6.66 -39.25 -0.26 2.13 16 7 O -0.30 -5.31 9.54 -19.68 -0.19 -5.50 16 8 C 0.03 0.37 9.81 101.05 0.99 1.36 16 9 C -0.11 -2.42 5.48 -104.43 -0.57 -2.99 16 10 C 0.19 4.27 5.43 -5.20 -0.03 4.24 16 11 N -0.58 -15.45 2.91 -182.50 -0.53 -15.98 16 12 C 0.17 4.37 9.01 59.85 0.54 4.91 16 13 C -0.25 -7.06 9.68 -15.06 -0.15 -7.21 16 14 H 0.07 2.09 7.84 -52.49 -0.41 1.68 16 15 C 0.00 0.03 5.14 -17.43 -0.09 -0.06 16 16 N -0.90 -27.22 10.56 55.49 0.59 -26.63 16 17 Si 0.90 22.89 29.57 -169.99 -5.03 17.86 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 C 0.12 2.69 7.25 -39.32 -0.28 2.41 16 22 F -0.12 -2.85 16.32 2.25 0.04 -2.81 16 23 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 24 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 25 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.13 1.60 6.29 -52.48 -0.33 1.27 16 27 H 0.13 1.61 6.29 -52.48 -0.33 1.28 16 28 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 29 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 30 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.27 7.54 -51.93 -0.39 0.88 16 32 H 0.06 1.25 7.25 -51.93 -0.38 0.87 16 33 H 0.03 0.75 7.40 -51.93 -0.38 0.36 16 34 H 0.04 1.20 7.20 -51.93 -0.37 0.83 16 35 H 0.00 0.05 7.84 -51.93 -0.41 -0.36 16 36 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 306.47 15.07 4.62 4.62 Total: -1.00 -33.47 306.47 -5.12 -38.59 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: -4.58 Total: -4.93 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 0.17 Total: 0.52 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.06 Total: -42.61 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -0.39 Total: -11.23 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.81 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.03 Total: 17.86 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.47 -5.12 -38.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237583522.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.747 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds