Wall clock time and date at job start Mon Mar 30 2020 00:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.36034 * 117.00066 * 2 1 4 4 C 1.38625 * 120.00818 * 359.97438 * 3 2 1 5 5 C 1.38165 * 120.02586 * 179.97438 * 4 3 2 6 6 C 1.38706 * 120.03840 * 359.97438 * 5 4 3 7 7 O 1.35981 * 119.99393 * 180.02562 * 6 5 4 8 8 C 1.42906 * 116.99671 * 0.02562 * 7 6 5 9 9 C 1.38680 * 120.01239 * 0.04652 * 6 5 4 10 10 C 1.50701 * 120.01169 * 179.97438 * 9 6 5 11 11 N 1.46496 * 109.47494 * 89.99319 * 10 9 6 12 12 C 1.46502 * 120.00354 * 270.00668 * 11 10 9 13 13 C 1.36943 * 119.99825 * 89.99820 * 11 10 9 14 14 H 1.07994 * 119.99718 * 22.17852 * 13 11 10 15 15 C 1.38813 * 119.99913 * 202.17293 * 13 11 10 16 16 N 1.31622 * 120.00086 * 11.20313 * 15 13 11 17 17 Si 1.86794 * 119.99965 * 191.19889 * 15 13 11 18 18 H 1.48506 * 109.47162 * 90.00133 * 17 15 13 19 19 H 1.48504 * 109.47280 * 210.00298 * 17 15 13 20 20 H 1.48499 * 109.47061 * 330.00453 * 17 15 13 21 21 C 1.38313 * 119.97683 * 359.69847 * 9 6 5 22 22 F 1.35103 * 120.02028 * 180.30639 * 21 9 6 23 23 H 1.08998 * 109.46789 * 60.00230 * 1 2 3 24 24 H 1.09000 * 109.46765 * 300.00375 * 1 2 3 25 25 H 1.09000 * 109.47006 * 180.02562 * 1 2 3 26 26 H 1.08008 * 119.98760 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.98391 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.46745 * 299.99298 * 8 7 6 29 29 H 1.08991 * 109.47343 * 59.99911 * 8 7 6 30 30 H 1.09003 * 109.46352 * 179.97438 * 8 7 6 31 31 H 1.08999 * 109.47039 * 209.99496 * 10 9 6 32 32 H 1.09004 * 109.46710 * 329.99110 * 10 9 6 33 33 H 1.08999 * 109.47444 * 94.59107 * 12 11 10 34 34 H 1.08997 * 109.46908 * 214.59932 * 12 11 10 35 35 H 1.09004 * 109.46576 * 334.58911 * 12 11 10 36 36 H 0.96996 * 119.99812 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0467 1.2121 0.0000 4 6 1.2919 2.3748 -0.0005 5 6 1.9188 3.6060 0.0000 6 6 3.3038 3.6800 0.0016 7 8 3.9199 4.8922 0.0027 8 6 3.0786 6.0474 0.0026 9 6 4.0605 2.5178 0.0017 10 6 5.5654 2.5981 0.0029 11 7 6.0521 2.6238 1.3844 12 6 6.2276 3.9035 2.0756 13 6 6.3427 1.4515 2.0298 14 1 6.5637 0.5615 1.4594 15 6 6.3534 1.4072 3.4172 16 7 5.8744 2.4175 4.1116 17 14 7.0474 -0.0864 4.2986 18 1 8.4989 0.1123 4.5415 19 1 6.3481 -0.2644 5.5966 20 1 6.8469 -1.2944 3.4586 21 6 3.4336 1.2849 0.0065 22 9 4.1699 0.1522 0.0129 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2133 2.3182 -0.0005 27 1 1.3300 4.5115 -0.0008 28 1 2.4501 6.0391 -0.8880 29 1 2.4487 6.0382 0.8920 30 1 3.6955 6.9460 0.0040 31 1 5.9760 1.7290 -0.5109 32 1 5.8811 3.5064 -0.5105 33 1 5.3324 4.1294 2.6550 34 1 7.0866 3.8407 2.7436 35 1 6.3946 4.6925 1.3423 36 1 5.8816 2.3864 5.0810 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237583522.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:14 Heat of formation + Delta-G solvation = -82.547041 kcal Electronic energy + Delta-G solvation = -21505.170266 eV Core-core repulsion = 18098.282200 eV Total energy + Delta-G solvation = -3406.888066 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.69549 -41.29429 -39.89291 -37.80749 -36.83006 -33.75988 -31.81996 -30.59240 -28.51219 -27.86953 -27.70913 -27.22378 -23.80486 -23.01706 -21.99692 -19.36256 -18.85594 -18.49591 -18.17557 -17.23301 -16.92367 -16.74139 -16.38159 -15.92210 -15.70915 -15.62050 -15.41374 -15.13153 -15.01072 -13.89727 -13.69069 -13.60680 -13.24525 -13.04015 -12.86710 -12.80755 -12.56006 -12.46964 -12.37588 -12.16367 -12.03176 -11.86988 -11.72748 -11.25131 -10.64893 -9.69910 -8.83471 -8.66157 -7.83277 -5.29626 0.15105 0.39724 1.42594 1.43991 1.53259 2.24815 2.45673 2.48652 2.64719 3.31013 3.45777 3.75926 3.83838 3.95575 4.18998 4.34751 4.39044 4.42596 4.42663 4.50948 4.52378 4.71876 4.81190 4.86340 4.91680 4.93230 5.10336 5.15345 5.27275 5.37366 5.61733 5.64668 5.75000 6.31552 6.35376 6.57284 7.15338 7.84488 8.28817 9.19559 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.015516 B = 0.008433 C = 0.006224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.129695 B = 3319.475721 C = 4497.975289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.043 3.957 4 C -0.145 4.145 5 C -0.175 4.175 6 C 0.120 3.880 7 O -0.326 6.326 8 C 0.019 3.981 9 C -0.141 4.141 10 C 0.193 3.807 11 N -0.602 5.602 12 C 0.192 3.808 13 C -0.254 4.254 14 H 0.064 0.936 15 C -0.051 4.051 16 N -0.934 5.934 17 Si 0.964 3.036 18 H -0.280 1.280 19 H -0.292 1.292 20 H -0.275 1.275 21 C 0.083 3.917 22 F -0.145 7.145 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.117 0.883 26 H 0.175 0.825 27 H 0.171 0.829 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.115 0.885 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.000 1.000 34 H 0.017 0.983 35 H 0.030 0.970 36 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.174 4.925 -10.420 17.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C -0.002 4.002 4 C -0.163 4.163 5 C -0.194 4.194 6 C 0.073 3.927 7 O -0.240 6.240 8 C -0.075 4.075 9 C -0.146 4.146 10 C 0.067 3.933 11 N -0.323 5.323 12 C 0.048 3.952 13 C -0.384 4.384 14 H 0.081 0.919 15 C -0.246 4.246 16 N -0.581 5.581 17 Si 0.792 3.208 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.200 1.200 21 C 0.063 3.937 22 F -0.124 7.124 23 H 0.094 0.906 24 H 0.082 0.918 25 H 0.135 0.865 26 H 0.192 0.808 27 H 0.188 0.812 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.133 0.867 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.018 0.982 34 H 0.035 0.965 35 H 0.048 0.952 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.815 4.779 -10.241 17.086 hybrid contribution 0.139 -0.939 0.947 1.341 sum -12.676 3.840 -9.293 16.180 Atomic orbital electron populations 1.23392 0.75984 1.05646 1.02570 1.86101 1.23968 1.25892 1.89618 1.18981 0.90019 0.86842 1.04376 1.21126 1.01267 0.89717 1.04232 1.21370 0.92245 0.99777 1.06006 1.18442 0.91059 0.85013 0.98168 1.86107 1.36786 1.12425 1.88644 1.23348 0.96351 0.85611 1.02199 1.20245 1.00075 0.89589 1.04671 1.19727 0.86510 1.00400 0.86682 1.44268 1.73789 1.03219 1.11012 1.20437 0.97658 0.84332 0.92822 1.19490 1.39291 0.90150 0.89502 0.91856 1.25749 1.01057 1.00322 0.97473 1.70245 1.49896 1.32715 1.05244 0.85311 0.78061 0.79736 0.77694 1.20600 1.21867 1.20029 1.16852 0.86709 0.82164 1.08012 1.91411 1.77475 1.49250 1.94217 0.90586 0.91815 0.86480 0.80806 0.81217 0.90572 0.92427 0.86670 0.93467 0.90681 0.98201 0.96452 0.95194 0.94337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.34 -11.55 10.36 -93.94 -0.97 -12.52 16 3 C 0.04 1.59 6.69 22.52 0.15 1.74 16 4 C -0.14 -4.07 9.03 22.34 0.20 -3.86 16 5 C -0.18 -4.96 9.03 22.36 0.20 -4.76 16 6 C 0.12 4.33 6.66 22.49 0.15 4.48 16 7 O -0.33 -10.81 9.54 -93.34 -0.89 -11.70 16 8 C 0.02 0.39 9.81 113.37 1.11 1.51 16 9 C -0.14 -6.13 5.48 -19.74 -0.11 -6.24 16 10 C 0.19 8.95 5.43 85.63 0.46 9.42 16 11 N -0.60 -32.77 2.91 -731.31 -2.13 -34.90 16 12 C 0.19 10.15 9.01 127.77 1.15 11.30 16 13 C -0.25 -15.11 9.68 84.03 0.81 -14.30 16 14 H 0.06 3.79 7.84 -2.91 -0.02 3.77 16 15 C -0.05 -3.05 5.14 84.86 0.44 -2.61 16 16 N -0.93 -57.83 10.56 21.65 0.23 -57.60 16 17 Si 0.96 48.28 29.57 68.60 2.03 50.31 16 18 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 19 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 20 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 21 C 0.08 3.71 7.25 22.44 0.16 3.87 16 22 F -0.14 -7.14 16.32 44.97 0.73 -6.41 16 23 H 0.08 1.13 7.66 -2.39 -0.02 1.12 16 24 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 25 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.17 3.27 6.29 -2.91 -0.02 3.25 16 27 H 0.17 3.30 6.29 -2.91 -0.02 3.28 16 28 H 0.08 1.16 7.66 -2.39 -0.02 1.14 16 29 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 30 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 2.21 7.54 -2.39 -0.02 2.19 16 32 H 0.07 3.15 7.25 -2.38 -0.02 3.13 16 33 H 0.00 -0.02 7.40 -2.39 -0.02 -0.04 16 34 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 35 H 0.03 1.37 7.84 -2.38 -0.02 1.35 16 36 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -76.13 306.47 5.94 -70.19 By element: Atomic # 1 Polarization: -0.48 SS G_CDS: 1.09 Total: 0.61 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 5.85 Total: 2.02 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -1.90 Total: -92.51 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -1.86 Total: -24.22 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 0.73 Total: -6.41 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.03 Total: 50.31 kcal Total: -76.13 5.94 -70.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237583522.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.352 kcal (2) G-P(sol) polarization free energy of solvation -76.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds