Wall clock time and date at job start Mon Mar 30 2020 00:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35995 * 116.99587 * 2 1 4 4 C 1.38633 * 120.06166 * 359.97438 * 3 2 1 5 5 C 1.38223 * 120.03554 * 179.97438 * 4 3 2 6 6 C 1.38259 * 120.15951 * 0.02607 * 5 4 3 7 7 C 1.50704 * 119.93980 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47170 * 259.99978 * 7 6 5 9 9 C 1.46892 * 111.00162 * 293.95226 * 8 7 6 10 10 C 1.46900 * 110.99813 * 169.99810 * 8 7 6 11 11 C 1.50700 * 109.47224 * 189.99926 * 10 8 7 12 12 H 1.08000 * 119.99846 * 0.02562 * 11 10 8 13 13 C 1.37879 * 120.00269 * 179.97438 * 11 10 8 14 14 N 1.31512 * 119.99852 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99749 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47071 * 89.99383 * 15 13 11 17 17 H 1.48497 * 109.46914 * 209.99467 * 15 13 11 18 18 H 1.48492 * 109.47076 * 329.99570 * 15 13 11 19 19 C 1.38418 * 120.12528 * 359.97438 * 6 5 4 20 20 F 1.35098 * 120.02385 * 180.02562 * 19 6 5 21 21 C 1.38755 * 119.95581 * 359.77250 * 19 6 5 22 22 O 1.36056 * 120.08119 * 180.25457 * 21 19 6 23 23 H 1.09002 * 109.47382 * 60.00075 * 1 2 3 24 24 H 1.09001 * 109.46938 * 300.00061 * 1 2 3 25 25 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 26 26 H 1.07990 * 119.97986 * 359.97438 * 4 3 2 27 27 H 1.07998 * 119.91790 * 180.02562 * 5 4 3 28 28 H 1.09001 * 109.46768 * 20.00175 * 7 6 5 29 29 H 1.09004 * 109.46920 * 139.99732 * 7 6 5 30 30 H 1.09000 * 109.47259 * 59.99908 * 9 8 7 31 31 H 1.09000 * 109.47273 * 180.02562 * 9 8 7 32 32 H 1.09004 * 109.46950 * 300.00162 * 9 8 7 33 33 H 1.09006 * 109.47293 * 310.00217 * 10 8 7 34 34 H 1.09001 * 109.47167 * 69.99826 * 10 8 7 35 35 H 0.97002 * 119.99958 * 180.02562 * 14 13 11 36 36 H 0.96707 * 113.99607 * 270.23075 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2925 2.3752 -0.0005 5 6 1.9205 3.6065 0.0000 6 6 3.3010 3.6822 0.0005 7 6 3.9805 5.0273 0.0005 8 7 4.4165 5.3557 -1.3633 9 6 5.4665 4.4338 -1.8166 10 6 4.8676 6.7510 -1.4501 11 6 5.0723 7.1238 -2.8959 12 1 4.8855 6.3969 -3.6726 13 6 5.4969 8.3930 -3.2272 14 7 5.6760 8.7180 -4.4889 15 14 5.8194 9.6503 -1.8838 16 1 7.2364 9.5583 -1.4495 17 1 5.5495 11.0137 -2.4069 18 1 4.9285 9.3785 -0.7273 19 6 4.0602 2.5248 0.0011 20 9 5.4090 2.6011 0.0021 21 6 3.4350 1.2861 0.0058 22 8 4.1787 0.1468 0.0116 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2140 2.3194 -0.0014 27 1 1.3313 4.5117 0.0000 28 1 3.2822 5.7871 0.3516 29 1 4.8467 4.9968 0.6615 30 1 5.0826 3.4137 -1.8085 31 1 5.7712 4.6997 -2.8288 32 1 6.3250 4.5043 -1.1487 33 1 4.1146 7.4045 -1.0095 34 1 5.8074 6.8634 -0.9094 35 1 5.9751 9.6108 -4.7220 36 1 4.3976 -0.1844 -0.8702 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238367115.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:08 Heat of formation + Delta-G solvation = -82.428315 kcal Electronic energy + Delta-G solvation = -20680.257506 eV Core-core repulsion = 17273.374589 eV Total energy + Delta-G solvation = -3406.882918 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.92663 -40.44219 -38.01503 -37.37223 -35.87201 -32.55193 -30.73586 -29.95022 -28.06507 -27.59641 -26.20734 -23.79738 -22.69794 -21.44137 -20.12791 -18.76244 -17.96813 -17.35616 -16.82640 -16.37388 -16.04025 -15.71516 -15.10613 -14.83001 -14.51847 -14.31855 -14.01801 -13.91782 -13.43002 -12.86316 -12.62754 -12.37226 -12.35976 -11.91050 -11.76839 -11.41059 -11.15891 -11.09015 -10.95065 -10.65653 -10.65258 -10.17138 -9.84374 -9.29900 -8.72157 -8.58525 -8.24851 -7.40327 -6.05530 -4.02938 0.98060 1.14036 2.89585 3.28144 3.34552 3.36382 3.37095 3.94776 4.41501 4.44613 4.64529 4.77094 4.83300 4.89481 4.99122 5.07374 5.18252 5.24054 5.27785 5.51541 5.84409 5.89684 5.96007 6.03755 6.12917 6.27950 6.43921 6.55089 6.71487 6.85570 6.96838 6.98200 7.56503 7.57009 7.86063 8.00113 8.64575 9.03057 9.55859 11.07598 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.032938 B = 0.004360 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.870004 B = 6419.973481 C = 6708.975186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.122 3.878 4 C -0.205 4.205 5 C -0.042 4.042 6 C -0.117 4.117 7 C 0.090 3.910 8 N -0.524 5.524 9 C 0.032 3.968 10 C 0.161 3.839 11 C -0.509 4.509 12 H 0.081 0.919 13 C 0.068 3.932 14 N -0.900 5.900 15 Si 0.875 3.125 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.267 1.267 19 C 0.121 3.879 20 F -0.121 7.121 21 C 0.035 3.965 22 O -0.477 6.477 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.100 0.900 26 H 0.137 0.863 27 H 0.141 0.859 28 H 0.084 0.916 29 H 0.038 0.962 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.016 0.984 33 H 0.029 0.971 34 H -0.015 1.015 35 H 0.264 0.736 36 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.882 -15.417 10.486 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.076 3.924 4 C -0.224 4.224 5 C -0.060 4.060 6 C -0.118 4.118 7 C -0.038 4.038 8 N -0.248 5.248 9 C -0.117 4.117 10 C 0.035 3.965 11 C -0.547 4.547 12 H 0.099 0.901 13 C -0.133 4.133 14 N -0.539 5.539 15 Si 0.703 3.297 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.192 1.192 19 C 0.100 3.900 20 F -0.100 7.100 21 C -0.012 4.012 22 O -0.286 6.286 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.119 0.881 26 H 0.155 0.845 27 H 0.159 0.841 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.035 0.965 33 H 0.047 0.953 34 H 0.003 0.997 35 H 0.073 0.927 36 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -10.122 -15.442 10.663 21.322 hybrid contribution 0.962 0.921 0.559 1.445 sum -9.160 -14.521 11.223 20.511 Atomic orbital electron populations 1.23116 0.78220 1.04041 1.01604 1.86124 1.21365 1.25969 1.88523 1.19023 0.90756 0.85099 0.97565 1.21185 1.00348 0.91561 1.09330 1.20768 0.92844 0.97574 0.94853 1.19876 0.93967 0.94392 1.03609 1.20983 0.98487 0.91948 0.92362 1.62064 1.38951 1.05198 1.18602 1.22488 0.92237 0.95239 1.01702 1.20224 0.93487 0.84244 0.98527 1.21018 1.44481 0.98450 0.90747 0.90112 1.24893 0.95126 0.98053 0.95235 1.69891 1.47142 1.20508 1.16391 0.86858 0.79001 0.81184 0.82673 1.20333 1.21136 1.19183 1.17538 0.77538 0.92565 1.02323 1.91518 1.28258 1.96895 1.93287 1.17450 0.86988 0.85490 1.11234 1.84927 1.71572 1.38700 1.33400 0.92349 0.92483 0.88145 0.84489 0.84141 0.89772 0.94427 0.93288 0.90323 0.96507 0.95269 0.99699 0.92650 0.75906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.52 10.28 -34.27 -0.35 -3.87 16 3 C 0.12 1.55 6.70 -39.13 -0.26 1.29 16 4 C -0.21 -2.31 9.04 -39.44 -0.36 -2.67 16 5 C -0.04 -0.53 9.66 -39.58 -0.38 -0.91 16 6 C -0.12 -1.79 5.16 -104.55 -0.54 -2.33 16 7 C 0.09 1.57 5.00 -4.97 -0.02 1.54 16 8 N -0.52 -11.18 4.74 -245.82 -1.17 -12.34 16 9 C 0.03 0.65 7.92 60.06 0.48 1.12 16 10 C 0.16 3.93 3.79 -4.98 -0.02 3.91 16 11 C -0.51 -14.50 9.01 -34.44 -0.31 -14.81 16 12 H 0.08 2.51 7.37 -52.49 -0.39 2.12 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -27.59 13.96 55.43 0.77 -26.81 16 15 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 19 C 0.12 1.89 5.88 -39.32 -0.23 1.65 16 20 F -0.12 -2.04 13.64 2.25 0.03 -2.01 16 21 C 0.03 0.50 6.72 -39.09 -0.26 0.24 16 22 O -0.48 -6.38 13.15 -34.47 -0.45 -6.84 16 23 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 24 H 0.06 0.33 7.66 -51.93 -0.40 -0.06 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.14 1.13 6.30 -52.49 -0.33 0.80 16 27 H 0.14 1.53 8.03 -52.49 -0.42 1.11 16 28 H 0.08 1.34 7.79 -51.93 -0.40 0.93 16 29 H 0.04 0.66 7.92 -51.93 -0.41 0.25 16 30 H 0.05 0.91 5.07 -51.93 -0.26 0.64 16 31 H 0.08 1.76 6.76 -51.93 -0.35 1.41 16 32 H 0.02 0.33 7.81 -51.93 -0.41 -0.07 16 33 H 0.03 0.70 6.99 -51.93 -0.36 0.34 16 34 H -0.01 -0.36 7.55 -51.93 -0.39 -0.75 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.39 3.51 9.07 45.56 0.41 3.92 16 LS Contribution 300.58 15.07 4.53 4.53 Total: -1.00 -33.29 300.58 -6.03 -39.32 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -3.70 Total: -0.85 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -1.02 Total: -7.92 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: -0.39 Total: -39.15 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.81 Total: -10.71 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.03 Total: -2.01 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.29 -6.03 -39.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238367115.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.110 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds