Wall clock time and date at job start Mon Mar 30 2020 00:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35995 * 116.99587 * 2 1 4 4 C 1.38633 * 120.06166 * 359.97438 * 3 2 1 5 5 C 1.38223 * 120.03554 * 179.97438 * 4 3 2 6 6 C 1.38259 * 120.15951 * 0.02607 * 5 4 3 7 7 C 1.50704 * 119.93980 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47170 * 259.99978 * 7 6 5 9 9 C 1.46892 * 111.00162 * 293.95226 * 8 7 6 10 10 C 1.46900 * 110.99813 * 169.99810 * 8 7 6 11 11 C 1.50700 * 109.47224 * 189.99926 * 10 8 7 12 12 H 1.08000 * 119.99846 * 0.02562 * 11 10 8 13 13 C 1.37879 * 120.00269 * 179.97438 * 11 10 8 14 14 N 1.31512 * 119.99852 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99749 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47071 * 89.99383 * 15 13 11 17 17 H 1.48497 * 109.46914 * 209.99467 * 15 13 11 18 18 H 1.48492 * 109.47076 * 329.99570 * 15 13 11 19 19 C 1.38418 * 120.12528 * 359.97438 * 6 5 4 20 20 F 1.35098 * 120.02385 * 180.02562 * 19 6 5 21 21 C 1.38755 * 119.95581 * 359.77250 * 19 6 5 22 22 O 1.36056 * 120.08119 * 180.25457 * 21 19 6 23 23 H 1.09002 * 109.47382 * 60.00075 * 1 2 3 24 24 H 1.09001 * 109.46938 * 300.00061 * 1 2 3 25 25 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 26 26 H 1.07990 * 119.97986 * 359.97438 * 4 3 2 27 27 H 1.07998 * 119.91790 * 180.02562 * 5 4 3 28 28 H 1.09001 * 109.46768 * 20.00175 * 7 6 5 29 29 H 1.09004 * 109.46920 * 139.99732 * 7 6 5 30 30 H 1.09000 * 109.47259 * 59.99908 * 9 8 7 31 31 H 1.09000 * 109.47273 * 180.02562 * 9 8 7 32 32 H 1.09004 * 109.46950 * 300.00162 * 9 8 7 33 33 H 1.09006 * 109.47293 * 310.00217 * 10 8 7 34 34 H 1.09001 * 109.47167 * 69.99826 * 10 8 7 35 35 H 0.97002 * 119.99958 * 180.02562 * 14 13 11 36 36 H 0.96707 * 113.99607 * 270.23075 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2925 2.3752 -0.0005 5 6 1.9205 3.6065 0.0000 6 6 3.3010 3.6822 0.0005 7 6 3.9805 5.0273 0.0005 8 7 4.4165 5.3557 -1.3633 9 6 5.4665 4.4338 -1.8166 10 6 4.8676 6.7510 -1.4501 11 6 5.0723 7.1238 -2.8959 12 1 4.8855 6.3969 -3.6726 13 6 5.4969 8.3930 -3.2272 14 7 5.6760 8.7180 -4.4889 15 14 5.8194 9.6503 -1.8838 16 1 7.2364 9.5583 -1.4495 17 1 5.5495 11.0137 -2.4069 18 1 4.9285 9.3785 -0.7273 19 6 4.0602 2.5248 0.0011 20 9 5.4090 2.6011 0.0021 21 6 3.4350 1.2861 0.0058 22 8 4.1787 0.1468 0.0116 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2140 2.3194 -0.0014 27 1 1.3313 4.5117 0.0000 28 1 3.2822 5.7871 0.3516 29 1 4.8467 4.9968 0.6615 30 1 5.0826 3.4137 -1.8085 31 1 5.7712 4.6997 -2.8288 32 1 6.3250 4.5043 -1.1487 33 1 4.1146 7.4045 -1.0095 34 1 5.8074 6.8634 -0.9094 35 1 5.9751 9.6108 -4.7220 36 1 4.3976 -0.1844 -0.8702 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238367115.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:08 Heat of formation + Delta-G solvation = -107.796265 kcal Electronic energy + Delta-G solvation = -20681.357543 eV Core-core repulsion = 17273.374589 eV Total energy + Delta-G solvation = -3407.982955 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.12414 -41.37446 -39.12718 -38.50955 -37.20927 -34.65432 -32.02481 -30.93167 -29.72696 -28.67780 -27.48567 -25.36777 -23.73758 -22.83180 -21.72522 -19.74442 -19.03782 -18.93942 -18.29470 -17.53019 -17.08202 -16.65917 -16.60679 -16.06024 -15.92015 -15.63708 -15.61974 -15.15846 -14.51188 -14.41304 -14.28511 -13.60468 -13.49304 -13.18471 -13.10055 -12.82674 -12.59605 -12.56904 -12.16857 -12.09228 -11.80747 -11.78176 -11.68495 -11.43672 -10.78833 -9.75281 -9.31941 -9.02404 -8.27536 -6.31343 -0.02973 0.11422 1.36551 1.37539 1.48717 2.09627 2.34150 2.35526 2.99260 3.05529 3.33373 3.41058 3.70900 3.82025 3.99692 4.19921 4.33078 4.41048 4.42632 4.44537 4.59923 4.64161 4.77952 4.78970 4.87684 4.92735 5.00890 5.09026 5.14146 5.35427 5.51877 5.55142 5.94767 6.18488 6.25327 6.60692 6.68715 6.74393 7.32045 8.89142 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.032938 B = 0.004360 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.870004 B = 6419.973481 C = 6708.975186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.322 6.322 3 C 0.124 3.876 4 C -0.192 4.192 5 C -0.039 4.039 6 C -0.137 4.137 7 C 0.093 3.907 8 N -0.537 5.537 9 C 0.043 3.957 10 C 0.170 3.830 11 C -0.517 4.517 12 H 0.036 0.964 13 C 0.008 3.992 14 N -0.948 5.948 15 Si 0.948 3.052 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.244 1.244 19 C 0.098 3.902 20 F -0.137 7.137 21 C 0.022 3.978 22 O -0.490 6.490 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.120 0.880 26 H 0.174 0.826 27 H 0.162 0.838 28 H 0.102 0.898 29 H 0.034 0.966 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.016 0.984 33 H 0.041 0.959 34 H -0.015 1.015 35 H 0.267 0.733 36 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.929 -15.622 12.548 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.235 6.235 3 C 0.077 3.923 4 C -0.210 4.210 5 C -0.057 4.057 6 C -0.138 4.138 7 C -0.035 4.035 8 N -0.261 5.261 9 C -0.106 4.106 10 C 0.043 3.957 11 C -0.556 4.556 12 H 0.055 0.945 13 C -0.189 4.189 14 N -0.589 5.589 15 Si 0.771 3.229 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.167 1.167 19 C 0.078 3.922 20 F -0.115 7.115 21 C -0.024 4.024 22 O -0.301 6.301 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.139 0.861 26 H 0.191 0.809 27 H 0.180 0.820 28 H 0.120 0.880 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.059 0.941 34 H 0.003 0.997 35 H 0.076 0.924 36 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -12.188 -15.685 12.732 23.593 hybrid contribution 1.489 0.787 -0.144 1.690 sum -10.699 -14.898 12.588 22.246 Atomic orbital electron populations 1.23488 0.75727 1.05973 1.02889 1.86121 1.23918 1.25396 1.88106 1.19135 0.90364 0.86202 0.96560 1.21532 1.02025 0.90284 1.07166 1.21048 0.91836 0.99131 0.93732 1.19797 0.95086 0.93047 1.05889 1.21012 0.98860 0.93880 0.89715 1.61962 1.38674 1.03686 1.21729 1.22345 0.92395 0.96066 0.99753 1.20009 0.93772 0.86408 0.95515 1.21239 1.44296 0.97851 0.92180 0.94539 1.25847 0.94730 1.00468 0.97842 1.70050 1.48512 1.21367 1.18986 0.85707 0.79413 0.77934 0.79842 1.19711 1.20556 1.16696 1.17789 0.77022 0.93483 1.03941 1.91464 1.29418 1.97022 1.93623 1.17595 0.87956 0.85182 1.11678 1.84868 1.71735 1.38480 1.34987 0.91117 0.90984 0.86148 0.80878 0.82023 0.87984 0.94784 0.91485 0.93435 0.96550 0.94134 0.99735 0.92401 0.74107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.25 16 2 O -0.32 -6.54 10.28 -79.59 -0.82 -7.36 16 3 C 0.12 2.87 6.70 22.56 0.15 3.02 16 4 C -0.19 -3.65 9.04 22.36 0.20 -3.45 16 5 C -0.04 -0.88 9.66 22.27 0.22 -0.67 16 6 C -0.14 -4.00 5.16 -19.82 -0.10 -4.10 16 7 C 0.09 3.10 5.00 85.56 0.43 3.53 16 8 N -0.54 -22.79 4.74 -931.64 -4.42 -27.21 16 9 C 0.04 1.80 7.92 127.69 1.01 2.81 16 10 C 0.17 8.19 3.79 85.56 0.32 8.51 16 11 C -0.52 -30.22 9.01 25.60 0.23 -29.99 16 12 H 0.04 2.39 7.37 -2.91 -0.02 2.37 16 13 C 0.01 0.49 5.47 84.66 0.46 0.95 16 14 N -0.95 -59.59 13.96 21.45 0.30 -59.29 16 15 Si 0.95 43.84 27.47 68.60 1.88 45.73 16 16 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 19 C 0.10 3.01 5.88 22.44 0.13 3.14 16 20 F -0.14 -4.65 13.64 44.97 0.61 -4.03 16 21 C 0.02 0.62 6.72 22.59 0.15 0.77 16 22 O -0.49 -12.83 13.15 -80.27 -1.06 -13.89 16 23 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 24 H 0.07 0.54 7.66 -2.39 -0.02 0.53 16 25 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.17 1.98 6.30 -2.92 -0.02 1.96 16 27 H 0.16 2.92 8.03 -2.91 -0.02 2.89 16 28 H 0.10 2.99 7.79 -2.39 -0.02 2.97 16 29 H 0.03 1.16 7.92 -2.38 -0.02 1.14 16 30 H 0.07 2.55 5.07 -2.39 -0.01 2.53 16 31 H 0.05 2.24 6.76 -2.39 -0.02 2.23 16 32 H 0.02 0.67 7.81 -2.38 -0.02 0.65 16 33 H 0.04 1.87 6.99 -2.38 -0.02 1.85 16 34 H -0.02 -0.72 7.55 -2.39 -0.02 -0.74 16 35 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 36 H 0.40 7.16 9.07 -74.05 -0.67 6.49 16 Total: -1.00 -73.61 300.58 1.21 -72.40 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 0.38 Total: 7.88 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 4.32 Total: -14.23 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -4.12 Total: -86.50 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -1.87 Total: -21.25 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.61 Total: -4.03 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.73 kcal Total: -73.61 1.21 -72.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238367115.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.393 kcal (2) G-P(sol) polarization free energy of solvation -73.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds