Wall clock time and date at job start Mon Mar 30 2020 00:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47325 * 2 1 4 4 C 1.35816 * 117.00278 * 179.97438 * 3 2 1 5 5 C 1.38609 * 120.11892 * 359.97438 * 4 3 2 6 6 C 1.38154 * 120.06053 * 180.02562 * 5 4 3 7 7 C 1.38412 * 120.31496 * 359.97438 * 6 5 4 8 8 C 1.37973 * 120.24646 * 0.02562 * 7 6 5 9 9 C 1.39345 * 119.92951 * 359.97438 * 8 7 6 10 10 C 1.48265 * 120.15252 * 180.02562 * 9 8 7 11 11 C 1.38957 * 119.62018 * 359.97438 * 10 9 8 12 12 C 1.40822 * 118.75919 * 179.97438 * 11 10 9 13 13 C 1.41529 * 120.98721 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00034 * 330.86122 * 13 12 11 15 15 C 1.40047 * 120.00090 * 150.85491 * 13 12 11 16 16 N 1.30733 * 119.99871 * 161.63206 * 15 13 12 17 17 Si 1.86800 * 119.99888 * 341.63464 * 15 13 12 18 18 H 1.48498 * 109.46981 * 95.39036 * 17 15 13 19 19 H 1.48506 * 109.46642 * 215.39205 * 17 15 13 20 20 H 1.48499 * 109.47282 * 335.38870 * 17 15 13 21 21 C 1.41162 * 118.03032 * 0.02562 * 12 11 10 22 22 C 1.37717 * 119.08332 * 359.97438 * 21 12 11 23 23 N 1.31937 * 121.16407 * 359.74793 * 22 21 12 24 24 H 1.09000 * 109.46766 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46858 * 300.00062 * 1 2 3 26 26 H 1.09002 * 109.46478 * 60.00034 * 1 2 3 27 27 H 1.09003 * 109.47332 * 239.99794 * 2 1 3 28 28 H 1.08999 * 109.47170 * 120.00190 * 2 1 3 29 29 H 1.07994 * 119.97216 * 0.02562 * 5 4 3 30 30 H 1.07998 * 119.84656 * 180.27788 * 6 5 4 31 31 H 1.08008 * 119.88104 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.03662 * 180.02562 * 8 7 6 33 33 H 1.08004 * 120.62580 * 0.02562 * 11 10 9 34 34 H 0.96997 * 120.00176 * 180.02562 * 16 15 13 35 35 H 1.08002 * 120.45770 * 179.97438 * 21 12 11 36 36 H 1.08003 * 119.41547 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3528 1.5252 0.0005 5 6 4.1995 0.4277 0.0016 6 6 5.5689 0.6102 0.0027 7 6 6.1037 1.8868 0.0022 8 6 5.2728 2.9883 0.0011 9 6 3.8900 2.8162 0.0000 10 6 2.9926 3.9964 -0.0017 11 6 3.5385 5.2742 -0.0016 12 6 2.6693 6.3823 -0.0038 13 6 3.1743 7.7044 -0.0033 14 1 4.1292 7.9176 0.4540 15 6 2.4357 8.7363 -0.5959 16 7 2.6979 9.9820 -0.2983 17 14 1.0760 8.3326 -1.8114 18 1 -0.2280 8.2973 -1.1018 19 1 1.0349 9.3721 -2.8713 20 1 1.3402 7.0076 -2.4277 21 6 1.2795 6.1352 -0.0054 22 6 0.8311 4.8331 -0.0053 23 7 1.6762 3.8199 -0.0087 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.7883 -0.5709 0.0016 30 1 6.2254 -0.2474 -0.0010 31 1 7.1753 2.0213 0.0026 32 1 5.6937 3.9830 0.0003 33 1 4.6093 5.4151 -0.0008 34 1 2.1862 10.6967 -0.7084 35 1 0.5775 6.9560 -0.0067 36 1 -0.2312 4.6379 -0.0069 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239557399.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:18 Heat of formation + Delta-G solvation = 12.338856 kcal Electronic energy + Delta-G solvation = -19654.269583 eV Core-core repulsion = 16682.265303 eV Total energy + Delta-G solvation = -2972.004280 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.90537 -38.32938 -37.03502 -34.04687 -32.22388 -31.48256 -31.23527 -29.44224 -28.18755 -25.92432 -23.93872 -22.99386 -21.85722 -20.71284 -20.47999 -18.07531 -17.34239 -15.94731 -15.79371 -15.53937 -15.37821 -14.75802 -14.22061 -14.03316 -13.67428 -13.34443 -13.05576 -12.91086 -12.71797 -12.49435 -12.44873 -11.76977 -11.53825 -11.51430 -11.26739 -11.00889 -10.76451 -10.59238 -10.51231 -10.45288 -9.80771 -9.39100 -9.00582 -8.21025 -8.11339 -7.97647 -7.17597 -7.04170 -4.68222 1.31693 1.75442 2.58687 2.75768 3.08502 3.18076 3.29228 3.57499 3.92293 4.09193 4.64503 4.95056 5.04494 5.04854 5.13057 5.23941 5.34080 5.46592 5.49354 5.60807 5.65277 5.90990 5.92268 6.01212 6.16895 6.19851 6.39163 6.43539 6.56683 6.60502 6.73641 6.83331 6.95728 7.08875 7.16284 7.27910 7.67286 7.85091 7.97868 8.23872 8.47329 8.68303 9.43176 9.97322 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.022363 B = 0.005705 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.785608 B = 4906.852112 C = 5949.748083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.047 3.953 3 O -0.261 6.261 4 C 0.156 3.844 5 C -0.224 4.224 6 C -0.087 4.087 7 C -0.166 4.166 8 C -0.070 4.070 9 C -0.056 4.056 10 C 0.166 3.834 11 C -0.241 4.241 12 C 0.109 3.891 13 C -0.443 4.443 14 H 0.093 0.907 15 C 0.088 3.912 16 N -0.800 5.800 17 Si 0.913 3.087 18 H -0.268 1.268 19 H -0.289 1.289 20 H -0.246 1.246 21 C -0.286 4.286 22 C 0.116 3.884 23 N -0.535 5.535 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.134 0.866 33 H 0.111 0.889 34 H 0.287 0.713 35 H 0.106 0.894 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.393 -15.082 -0.754 15.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 O -0.172 6.172 4 C 0.108 3.892 5 C -0.243 4.243 6 C -0.106 4.106 7 C -0.184 4.184 8 C -0.089 4.089 9 C -0.058 4.058 10 C 0.034 3.966 11 C -0.263 4.263 12 C 0.101 3.899 13 C -0.473 4.473 14 H 0.111 0.889 15 C -0.133 4.133 16 N -0.424 5.424 17 Si 0.739 3.261 18 H -0.194 1.194 19 H -0.216 1.216 20 H -0.169 1.169 21 C -0.309 4.309 22 C -0.039 4.039 23 N -0.249 5.249 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.152 0.848 33 H 0.129 0.871 34 H 0.098 0.902 35 H 0.124 0.876 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.122 -15.513 -0.762 15.532 hybrid contribution -0.155 0.754 -0.473 0.903 sum -0.277 -14.759 -1.235 14.813 Atomic orbital electron populations 1.21679 0.93038 1.01736 1.03857 1.22742 0.96065 0.83777 1.00280 1.86581 1.17626 1.26118 1.86916 1.19105 0.83114 0.92923 0.94046 1.21131 0.94411 0.97632 1.11107 1.20859 0.94164 0.97068 0.98465 1.20885 0.99512 0.92298 1.05691 1.21171 0.91429 0.99537 0.96752 1.18248 0.92408 0.89950 1.05180 1.19090 0.90095 0.90138 0.97274 1.21887 0.99161 0.91952 1.13331 1.17840 0.91014 0.93465 0.87583 1.19471 1.06179 0.89542 1.32104 0.88866 1.26158 0.96830 0.94214 0.96060 1.69647 1.36994 1.00688 1.35117 0.86285 0.80308 0.79683 0.79839 1.19385 1.21648 1.16918 1.21976 0.96240 0.97027 1.15622 1.21936 0.97744 0.88684 0.95529 1.67564 1.02140 1.34220 1.20962 0.91273 0.91484 0.91507 0.92916 0.92902 0.85961 0.86421 0.86122 0.84798 0.87150 0.90231 0.87589 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.28 37.16 0.38 -1.26 16 2 C 0.05 0.61 5.46 37.16 0.20 0.81 16 3 O -0.26 -4.73 7.96 -19.16 -0.15 -4.88 16 4 C 0.16 2.80 6.69 -38.85 -0.26 2.54 16 5 C -0.22 -3.25 9.03 -39.48 -0.36 -3.61 16 6 C -0.09 -1.15 10.03 -39.55 -0.40 -1.55 16 7 C -0.17 -2.32 10.03 -39.61 -0.40 -2.71 16 8 C -0.07 -1.18 9.41 -39.27 -0.37 -1.55 16 9 C -0.06 -1.12 5.89 -104.77 -0.62 -1.73 16 10 C 0.17 3.83 6.73 -83.05 -0.56 3.27 16 11 C -0.24 -5.75 9.25 -38.34 -0.35 -6.10 16 12 C 0.11 2.80 5.13 -106.56 -0.55 2.25 16 13 C -0.44 -11.87 9.63 -37.65 -0.36 -12.23 16 14 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 15 C 0.09 2.28 5.42 -17.34 -0.09 2.18 16 16 N -0.80 -20.95 13.92 55.55 0.77 -20.17 16 17 Si 0.91 20.70 24.54 -169.99 -4.17 16.53 16 18 H -0.27 -5.86 6.70 56.52 0.38 -5.48 16 19 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.25 -5.83 6.85 56.52 0.39 -5.44 16 21 C -0.29 -7.00 7.29 -38.66 -0.28 -7.28 16 22 C 0.12 2.67 11.15 -17.70 -0.20 2.47 16 23 N -0.53 -12.59 8.11 -9.95 -0.08 -12.67 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.61 7.67 -51.93 -0.40 0.21 16 28 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 29 H 0.12 1.45 6.30 -52.49 -0.33 1.12 16 30 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.13 2.15 6.18 -52.49 -0.32 1.82 16 33 H 0.11 2.41 6.19 -52.48 -0.32 2.09 16 34 H 0.29 6.78 8.29 -40.82 -0.34 6.44 16 35 H 0.11 2.53 4.76 -52.49 -0.25 2.28 16 36 H 0.13 2.46 8.06 -52.48 -0.42 2.04 16 LS Contribution 300.31 15.07 4.53 4.53 Total: -1.00 -29.52 300.31 -7.47 -36.99 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -4.16 Total: 4.17 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -4.21 Total: -24.49 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.69 Total: -32.84 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.15 Total: -4.88 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.17 Total: 16.53 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.52 -7.47 -36.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239557399.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.328 kcal (2) G-P(sol) polarization free energy of solvation -29.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds