Wall clock time and date at job start Mon Mar 30 2020 00:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47325 * 2 1 4 4 C 1.35816 * 117.00278 * 179.97438 * 3 2 1 5 5 C 1.38609 * 120.11892 * 359.97438 * 4 3 2 6 6 C 1.38154 * 120.06053 * 180.02562 * 5 4 3 7 7 C 1.38412 * 120.31496 * 359.97438 * 6 5 4 8 8 C 1.37973 * 120.24646 * 0.02562 * 7 6 5 9 9 C 1.39345 * 119.92951 * 359.97438 * 8 7 6 10 10 C 1.48265 * 120.15252 * 180.02562 * 9 8 7 11 11 C 1.38957 * 119.62018 * 359.97438 * 10 9 8 12 12 C 1.40822 * 118.75919 * 179.97438 * 11 10 9 13 13 C 1.41529 * 120.98721 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00034 * 330.86122 * 13 12 11 15 15 C 1.40047 * 120.00090 * 150.85491 * 13 12 11 16 16 N 1.30733 * 119.99871 * 161.63206 * 15 13 12 17 17 Si 1.86800 * 119.99888 * 341.63464 * 15 13 12 18 18 H 1.48498 * 109.46981 * 95.39036 * 17 15 13 19 19 H 1.48506 * 109.46642 * 215.39205 * 17 15 13 20 20 H 1.48499 * 109.47282 * 335.38870 * 17 15 13 21 21 C 1.41162 * 118.03032 * 0.02562 * 12 11 10 22 22 C 1.37717 * 119.08332 * 359.97438 * 21 12 11 23 23 N 1.31937 * 121.16407 * 359.74793 * 22 21 12 24 24 H 1.09000 * 109.46766 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46858 * 300.00062 * 1 2 3 26 26 H 1.09002 * 109.46478 * 60.00034 * 1 2 3 27 27 H 1.09003 * 109.47332 * 239.99794 * 2 1 3 28 28 H 1.08999 * 109.47170 * 120.00190 * 2 1 3 29 29 H 1.07994 * 119.97216 * 0.02562 * 5 4 3 30 30 H 1.07998 * 119.84656 * 180.27788 * 6 5 4 31 31 H 1.08008 * 119.88104 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.03662 * 180.02562 * 8 7 6 33 33 H 1.08004 * 120.62580 * 0.02562 * 11 10 9 34 34 H 0.96997 * 120.00176 * 180.02562 * 16 15 13 35 35 H 1.08002 * 120.45770 * 179.97438 * 21 12 11 36 36 H 1.08003 * 119.41547 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3528 1.5252 0.0005 5 6 4.1995 0.4277 0.0016 6 6 5.5689 0.6102 0.0027 7 6 6.1037 1.8868 0.0022 8 6 5.2728 2.9883 0.0011 9 6 3.8900 2.8162 0.0000 10 6 2.9926 3.9964 -0.0017 11 6 3.5385 5.2742 -0.0016 12 6 2.6693 6.3823 -0.0038 13 6 3.1743 7.7044 -0.0033 14 1 4.1292 7.9176 0.4540 15 6 2.4357 8.7363 -0.5959 16 7 2.6979 9.9820 -0.2983 17 14 1.0760 8.3326 -1.8114 18 1 -0.2280 8.2973 -1.1018 19 1 1.0349 9.3721 -2.8713 20 1 1.3402 7.0076 -2.4277 21 6 1.2795 6.1352 -0.0054 22 6 0.8311 4.8331 -0.0053 23 7 1.6762 3.8199 -0.0087 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.7883 -0.5709 0.0016 30 1 6.2254 -0.2474 -0.0010 31 1 7.1753 2.0213 0.0026 32 1 5.6937 3.9830 0.0003 33 1 4.6093 5.4151 -0.0008 34 1 2.1862 10.6967 -0.7084 35 1 0.5775 6.9560 -0.0067 36 1 -0.2312 4.6379 -0.0069 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239557399.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:18 Heat of formation + Delta-G solvation = -4.457953 kcal Electronic energy + Delta-G solvation = -19654.997947 eV Core-core repulsion = 16682.265303 eV Total energy + Delta-G solvation = -2972.732644 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.22306 -40.02095 -38.24445 -35.96578 -33.69176 -33.13716 -32.50794 -30.70277 -29.65681 -27.85036 -25.17079 -24.40122 -23.36993 -22.09366 -22.04462 -19.65211 -18.82097 -17.68087 -17.05538 -16.86960 -16.83005 -16.30116 -15.88026 -15.53676 -15.15665 -14.78625 -14.63109 -14.39806 -14.06149 -14.02596 -13.41796 -13.29471 -12.86110 -12.83407 -12.79883 -12.52934 -12.50775 -12.23313 -11.72044 -11.63269 -11.52543 -11.26417 -10.47488 -10.14169 -9.81569 -9.41952 -9.00033 -8.67853 -6.71321 -0.09163 0.56049 0.73814 1.07842 1.24421 1.37506 1.45851 2.07671 2.47776 2.58137 2.94139 3.54699 3.60203 3.87635 4.00240 4.13516 4.26164 4.30039 4.37505 4.42574 4.45661 4.55849 4.67028 4.74423 4.78547 4.90818 4.97609 5.01077 5.12318 5.23267 5.29077 5.32148 5.47738 5.56316 5.62770 5.71742 5.94987 6.07756 6.24426 6.52761 6.67358 6.72863 7.59911 8.07448 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.022363 B = 0.005705 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.785608 B = 4906.852112 C = 5949.748083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.038 3.962 3 O -0.295 6.295 4 C 0.143 3.857 5 C -0.221 4.221 6 C -0.069 4.069 7 C -0.163 4.163 8 C -0.078 4.078 9 C -0.108 4.108 10 C 0.168 3.832 11 C -0.263 4.263 12 C 0.095 3.905 13 C -0.476 4.476 14 H 0.064 0.936 15 C 0.057 3.943 16 N -0.833 5.833 17 Si 0.965 3.035 18 H -0.251 1.251 19 H -0.271 1.271 20 H -0.265 1.265 21 C -0.301 4.301 22 C 0.114 3.886 23 N -0.538 5.538 24 H 0.103 0.897 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.154 0.846 30 H 0.162 0.838 31 H 0.153 0.847 32 H 0.128 0.872 33 H 0.118 0.882 34 H 0.298 0.702 35 H 0.111 0.889 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.354 -18.513 -1.293 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.037 4.037 3 O -0.207 6.207 4 C 0.096 3.904 5 C -0.239 4.239 6 C -0.087 4.087 7 C -0.181 4.181 8 C -0.097 4.097 9 C -0.110 4.110 10 C 0.036 3.964 11 C -0.285 4.285 12 C 0.087 3.913 13 C -0.507 4.507 14 H 0.082 0.918 15 C -0.161 4.161 16 N -0.459 5.459 17 Si 0.788 3.212 18 H -0.176 1.176 19 H -0.197 1.197 20 H -0.189 1.189 21 C -0.323 4.323 22 C -0.042 4.042 23 N -0.252 5.252 24 H 0.121 0.879 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.171 0.829 30 H 0.180 0.820 31 H 0.171 0.829 32 H 0.146 0.854 33 H 0.135 0.865 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.158 -18.934 -1.291 18.978 hybrid contribution -0.034 1.539 -0.251 1.560 sum -0.193 -17.395 -1.541 17.464 Atomic orbital electron populations 1.21712 0.92194 1.03534 1.02539 1.23073 0.96806 0.81962 1.01828 1.86516 1.17942 1.29284 1.86987 1.19304 0.83763 0.93156 0.94220 1.21498 0.94718 0.97916 1.09802 1.21420 0.94218 0.98056 0.94957 1.21270 1.00805 0.91775 1.04276 1.21300 0.90873 1.00641 0.96849 1.18344 0.93097 0.89795 1.09741 1.19655 0.90500 0.91249 0.94970 1.22068 0.99619 0.92305 1.14480 1.18038 0.92169 0.93420 0.87680 1.19451 1.05889 0.90980 1.34391 0.91786 1.26765 0.98539 0.93854 0.96896 1.69652 1.38451 1.01419 1.36335 0.85496 0.78622 0.78770 0.78289 1.17611 1.19710 1.18919 1.22089 0.95714 0.97981 1.16543 1.22481 0.99407 0.88063 0.94205 1.67734 1.02507 1.34228 1.20681 0.87892 0.92767 0.92811 0.91227 0.91195 0.82879 0.82000 0.82920 0.85382 0.86459 0.89086 0.87161 0.82436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 10.28 71.98 0.74 -2.18 16 2 C 0.04 0.89 5.46 71.98 0.39 1.28 16 3 O -0.30 -10.32 7.96 -91.48 -0.73 -11.05 16 4 C 0.14 4.94 6.69 22.74 0.15 5.09 16 5 C -0.22 -5.57 9.03 22.34 0.20 -5.37 16 6 C -0.07 -1.48 10.03 22.29 0.22 -1.25 16 7 C -0.16 -4.04 10.03 22.25 0.22 -3.81 16 8 C -0.08 -2.58 9.41 22.47 0.21 -2.37 16 9 C -0.11 -4.29 5.89 -19.96 -0.12 -4.40 16 10 C 0.17 7.96 6.73 41.84 0.28 8.24 16 11 C -0.26 -13.11 9.25 23.07 0.21 -12.90 16 12 C 0.09 5.07 5.13 -21.12 -0.11 4.96 16 13 C -0.48 -27.02 9.63 23.52 0.23 -26.79 16 14 H 0.06 3.85 8.06 -2.91 -0.02 3.83 16 15 C 0.06 3.04 5.42 85.30 0.46 3.51 16 16 N -0.83 -44.91 13.92 21.84 0.30 -44.61 16 17 Si 0.96 43.08 24.54 68.60 1.68 44.76 16 18 H -0.25 -10.45 6.70 99.48 0.67 -9.79 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.26 -12.55 6.85 99.48 0.68 -11.87 16 21 C -0.30 -14.95 7.29 22.86 0.17 -14.79 16 22 C 0.11 5.22 11.15 84.55 0.94 6.16 16 23 N -0.54 -25.46 8.11 -185.40 -1.50 -26.96 16 24 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.36 7.67 -2.39 -0.02 1.34 16 28 H 0.07 1.36 7.66 -2.39 -0.02 1.34 16 29 H 0.15 2.85 6.30 -2.91 -0.02 2.83 16 30 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 31 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 32 H 0.13 4.22 6.18 -2.91 -0.02 4.21 16 33 H 0.12 5.47 6.19 -2.91 -0.02 5.45 16 34 H 0.30 14.31 8.29 -92.71 -0.77 13.54 16 35 H 0.11 5.28 4.76 -2.91 -0.01 5.27 16 36 H 0.16 6.01 8.06 -2.91 -0.02 5.98 16 Total: -1.00 -67.18 300.31 5.00 -62.18 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 1.03 Total: 20.30 kcal Atomic # 6 Polarization: -48.84 SS G_CDS: 4.21 Total: -44.63 kcal Atomic # 7 Polarization: -70.37 SS G_CDS: -1.20 Total: -71.57 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -0.73 Total: -11.05 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.68 Total: 44.76 kcal Total: -67.18 5.00 -62.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239557399.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.723 kcal (2) G-P(sol) polarization free energy of solvation -67.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds