Wall clock time and date at job start Mon Mar 30 2020 00:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42893 * 109.47491 * 2 1 4 4 C 1.35797 * 117.00063 * 184.62408 * 3 2 1 5 5 C 1.38611 * 120.12737 * 355.14147 * 4 3 2 6 6 C 1.38146 * 120.06653 * 180.02562 * 5 4 3 7 7 C 1.38439 * 120.32567 * 0.02562 * 6 5 4 8 8 C 1.37943 * 120.25078 * 0.02562 * 7 6 5 9 9 C 1.39403 * 119.93062 * 359.97438 * 8 7 6 10 10 C 1.48178 * 120.15910 * 180.02562 * 9 8 7 11 11 C 1.39971 * 119.61406 * 312.41141 * 10 9 8 12 12 C 1.38663 * 119.45880 * 179.74738 * 11 10 9 13 13 C 1.38312 * 118.69811 * 0.51818 * 12 11 10 14 14 C 1.40685 * 119.19966 * 359.72499 * 13 12 11 15 15 C 1.41361 * 119.76528 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00057 * 5.72746 * 15 14 13 17 17 C 1.40013 * 119.99766 * 185.72197 * 15 14 13 18 18 N 1.30744 * 120.00010 * 5.99653 * 17 15 14 19 19 Si 1.86802 * 119.99758 * 185.99157 * 17 15 14 20 20 H 1.48500 * 109.46699 * 90.00547 * 19 17 15 21 21 H 1.48502 * 109.46707 * 210.00109 * 19 17 15 22 22 H 1.48496 * 109.47333 * 330.00250 * 19 17 15 23 23 N 1.32261 * 119.61176 * 132.67976 * 10 9 8 24 24 H 1.09004 * 109.46666 * 305.00530 * 1 2 3 25 25 H 1.09000 * 109.47425 * 65.00237 * 1 2 3 26 26 H 1.08994 * 109.47759 * 185.00421 * 1 2 3 27 27 H 1.09002 * 109.46729 * 240.00137 * 2 1 3 28 28 H 1.08998 * 109.47358 * 120.00334 * 2 1 3 29 29 H 1.08004 * 119.96576 * 0.02562 * 5 4 3 30 30 H 1.08005 * 119.83633 * 179.74941 * 6 5 4 31 31 H 1.08000 * 119.87142 * 179.97438 * 7 6 5 32 32 H 1.08004 * 120.03404 * 180.02562 * 8 7 6 33 33 H 1.07995 * 120.27367 * 359.97438 * 11 10 9 34 34 H 1.08000 * 120.65213 * 180.21555 * 12 11 10 35 35 H 1.08001 * 120.40772 * 179.70362 * 13 12 11 36 36 H 0.97003 * 120.00099 * 185.01947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3490 1.5263 -0.0975 5 6 4.1993 0.4317 -0.0900 6 6 5.5649 0.6155 -0.1888 7 6 6.0927 1.8909 -0.2952 8 6 5.2588 2.9897 -0.3029 9 6 3.8791 2.8165 -0.2038 10 6 2.9786 3.9932 -0.2122 11 6 3.2658 5.0898 0.6088 12 6 2.4238 6.1914 0.5946 13 6 1.3125 6.1674 -0.2286 14 6 1.0743 5.0339 -1.0272 15 6 -0.0575 4.9968 -1.8733 16 1 -0.6842 5.8704 -1.9754 17 6 -0.3660 3.8275 -2.5789 18 7 0.3214 2.7357 -2.3673 19 14 -1.7597 3.8275 -3.8228 20 1 -1.2299 4.1982 -5.1596 21 1 -2.3646 2.4729 -3.8882 22 1 -2.7922 4.8114 -3.4093 23 7 1.9099 3.9928 -0.9915 24 1 -0.3633 0.5896 0.8418 25 1 -0.3634 0.4343 -0.9314 26 1 -0.3634 -1.0236 0.0896 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.7938 -0.5658 -0.0069 30 1 6.2243 -0.2398 -0.1785 31 1 7.1615 2.0261 -0.3716 32 1 5.6743 3.9831 -0.3865 33 1 4.1380 5.0796 1.2456 34 1 2.6289 7.0494 1.2176 35 1 0.6356 7.0085 -0.2579 36 1 0.1567 1.9466 -2.9068 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239557561.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:21 Heat of formation + Delta-G solvation = 17.839401 kcal Electronic energy + Delta-G solvation = -20267.274968 eV Core-core repulsion = 17295.509210 eV Total energy + Delta-G solvation = -2971.765759 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.56590 -37.87309 -36.73876 -33.61030 -31.86360 -31.08748 -30.32649 -29.34643 -28.26477 -25.50377 -23.56207 -22.70423 -21.40178 -20.80025 -20.07713 -17.64677 -17.27389 -15.80671 -15.42323 -15.13534 -14.87728 -14.48673 -14.19312 -13.88855 -13.46869 -12.89292 -12.74035 -12.59167 -12.10890 -11.98266 -11.96518 -11.42958 -11.29359 -11.16833 -11.01323 -10.99663 -10.66770 -10.49596 -10.25011 -10.14968 -9.80764 -9.29029 -8.60148 -8.06045 -7.72446 -7.46402 -7.12166 -6.31200 -4.40955 1.71060 2.01014 2.83219 3.10389 3.12153 3.14697 3.25964 3.90984 4.00444 4.33585 4.83074 5.21700 5.32334 5.39435 5.44780 5.51025 5.67957 5.76875 5.83488 5.94091 6.04386 6.18246 6.23458 6.30859 6.42787 6.57417 6.62780 6.77851 6.80578 6.85993 6.93224 7.08963 7.20573 7.32387 7.42121 7.65976 7.80913 8.07560 8.22856 8.29797 8.75105 9.00223 10.16370 10.38972 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.015701 B = 0.008183 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.883966 B = 3420.897386 C = 4544.930973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.061 3.939 3 O -0.260 6.260 4 C 0.167 3.833 5 C -0.225 4.225 6 C -0.090 4.090 7 C -0.172 4.172 8 C -0.071 4.071 9 C -0.045 4.045 10 C 0.184 3.816 11 C -0.302 4.302 12 C -0.060 4.060 13 C -0.279 4.279 14 C 0.257 3.743 15 C -0.433 4.433 16 H 0.081 0.919 17 C 0.072 3.928 18 N -0.697 5.697 19 Si 0.897 3.103 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.263 1.263 23 N -0.450 5.450 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.467 -6.438 2.642 8.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.015 4.015 3 O -0.171 6.171 4 C 0.119 3.881 5 C -0.244 4.244 6 C -0.109 4.109 7 C -0.190 4.190 8 C -0.090 4.090 9 C -0.047 4.047 10 C 0.038 3.962 11 C -0.326 4.326 12 C -0.084 4.084 13 C -0.302 4.302 14 C 0.132 3.868 15 C -0.464 4.464 16 H 0.099 0.901 17 C -0.154 4.154 18 N -0.318 5.318 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.187 1.187 23 N -0.161 5.161 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.138 0.862 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.143 0.857 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.009 -7.251 2.094 8.546 hybrid contribution -0.296 0.498 -0.040 0.581 sum 3.713 -6.752 2.054 7.975 Atomic orbital electron populations 1.21666 0.93165 1.00982 1.04432 1.22595 0.96024 0.83280 0.99599 1.86476 1.17823 1.26708 1.86126 1.19064 0.83271 0.92805 0.92979 1.21104 0.94383 0.97707 1.11229 1.20781 0.94195 0.96855 0.99028 1.20787 0.99142 0.92484 1.06589 1.20993 0.91468 0.98872 0.97702 1.18175 0.92330 0.90485 1.03706 1.19505 0.92606 0.90451 0.93608 1.21145 1.04409 0.97306 1.09721 1.20741 0.94520 0.96263 0.96884 1.21765 1.01271 1.01691 1.05445 1.18540 0.91606 0.86639 0.90037 1.19513 1.07335 0.97915 1.21667 0.90134 1.25989 0.97132 0.95076 0.97183 1.70174 1.31723 1.00291 1.29597 0.86489 0.81750 0.78355 0.81210 1.19602 1.20344 1.18715 1.68853 1.01403 1.25798 1.20081 0.91972 0.90643 0.91856 0.92893 0.93702 0.86187 0.86756 0.86592 0.85742 0.88876 0.88717 0.88546 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 10.28 37.16 0.38 -1.94 16 2 C 0.06 1.02 5.47 37.16 0.20 1.23 16 3 O -0.26 -5.70 9.03 -19.10 -0.17 -5.87 16 4 C 0.17 3.49 6.65 -38.83 -0.26 3.23 16 5 C -0.23 -3.84 9.03 -39.48 -0.36 -4.20 16 6 C -0.09 -1.37 10.03 -39.54 -0.40 -1.77 16 7 C -0.17 -2.69 10.03 -39.62 -0.40 -3.08 16 8 C -0.07 -1.32 9.43 -39.26 -0.37 -1.69 16 9 C -0.05 -1.00 5.62 -104.76 -0.59 -1.59 16 10 C 0.18 4.65 6.08 -82.95 -0.50 4.14 16 11 C -0.30 -7.12 9.49 -38.78 -0.37 -7.49 16 12 C -0.06 -1.39 10.15 -39.40 -0.40 -1.79 16 13 C -0.28 -7.05 9.83 -38.63 -0.38 -7.43 16 14 C 0.26 7.15 6.53 -85.01 -0.56 6.59 16 15 C -0.43 -11.67 9.13 -37.73 -0.34 -12.01 16 16 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 17 C 0.07 1.82 5.48 -17.35 -0.10 1.73 16 18 N -0.70 -18.02 11.52 55.55 0.64 -17.38 16 19 Si 0.90 18.64 29.57 -169.99 -5.03 13.61 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 23 N -0.45 -12.46 7.12 -7.69 -0.05 -12.51 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.83 7.61 -51.93 -0.40 0.44 16 28 H 0.04 0.65 7.72 -51.93 -0.40 0.25 16 29 H 0.12 1.75 6.32 -52.48 -0.33 1.42 16 30 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 31 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 32 H 0.12 2.13 7.98 -52.48 -0.42 1.71 16 33 H 0.09 1.95 7.98 -52.49 -0.42 1.54 16 34 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 35 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 36 H 0.27 6.37 8.30 -40.82 -0.34 6.03 16 LS Contribution 312.22 15.07 4.71 4.71 Total: -1.00 -29.95 312.22 -8.81 -38.76 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.47 Total: 4.76 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -4.43 Total: -26.07 kcal Atomic # 7 Polarization: -30.48 SS G_CDS: 0.59 Total: -29.89 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.17 Total: -5.87 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.95 -8.81 -38.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239557561.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.603 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds