Wall clock time and date at job start Mon Mar 30 2020 00:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42893 * 109.47491 * 2 1 4 4 C 1.35797 * 117.00063 * 184.62408 * 3 2 1 5 5 C 1.38611 * 120.12737 * 355.14147 * 4 3 2 6 6 C 1.38146 * 120.06653 * 180.02562 * 5 4 3 7 7 C 1.38439 * 120.32567 * 0.02562 * 6 5 4 8 8 C 1.37943 * 120.25078 * 0.02562 * 7 6 5 9 9 C 1.39403 * 119.93062 * 359.97438 * 8 7 6 10 10 C 1.48178 * 120.15910 * 180.02562 * 9 8 7 11 11 C 1.39971 * 119.61406 * 312.41141 * 10 9 8 12 12 C 1.38663 * 119.45880 * 179.74738 * 11 10 9 13 13 C 1.38312 * 118.69811 * 0.51818 * 12 11 10 14 14 C 1.40685 * 119.19966 * 359.72499 * 13 12 11 15 15 C 1.41361 * 119.76528 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00057 * 5.72746 * 15 14 13 17 17 C 1.40013 * 119.99766 * 185.72197 * 15 14 13 18 18 N 1.30744 * 120.00010 * 5.99653 * 17 15 14 19 19 Si 1.86802 * 119.99758 * 185.99157 * 17 15 14 20 20 H 1.48500 * 109.46699 * 90.00547 * 19 17 15 21 21 H 1.48502 * 109.46707 * 210.00109 * 19 17 15 22 22 H 1.48496 * 109.47333 * 330.00250 * 19 17 15 23 23 N 1.32261 * 119.61176 * 132.67976 * 10 9 8 24 24 H 1.09004 * 109.46666 * 305.00530 * 1 2 3 25 25 H 1.09000 * 109.47425 * 65.00237 * 1 2 3 26 26 H 1.08994 * 109.47759 * 185.00421 * 1 2 3 27 27 H 1.09002 * 109.46729 * 240.00137 * 2 1 3 28 28 H 1.08998 * 109.47358 * 120.00334 * 2 1 3 29 29 H 1.08004 * 119.96576 * 0.02562 * 5 4 3 30 30 H 1.08005 * 119.83633 * 179.74941 * 6 5 4 31 31 H 1.08000 * 119.87142 * 179.97438 * 7 6 5 32 32 H 1.08004 * 120.03404 * 180.02562 * 8 7 6 33 33 H 1.07995 * 120.27367 * 359.97438 * 11 10 9 34 34 H 1.08000 * 120.65213 * 180.21555 * 12 11 10 35 35 H 1.08001 * 120.40772 * 179.70362 * 13 12 11 36 36 H 0.97003 * 120.00099 * 185.01947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3490 1.5263 -0.0975 5 6 4.1993 0.4317 -0.0900 6 6 5.5649 0.6155 -0.1888 7 6 6.0927 1.8909 -0.2952 8 6 5.2588 2.9897 -0.3029 9 6 3.8791 2.8165 -0.2038 10 6 2.9786 3.9932 -0.2122 11 6 3.2658 5.0898 0.6088 12 6 2.4238 6.1914 0.5946 13 6 1.3125 6.1674 -0.2286 14 6 1.0743 5.0339 -1.0272 15 6 -0.0575 4.9968 -1.8733 16 1 -0.6842 5.8704 -1.9754 17 6 -0.3660 3.8275 -2.5789 18 7 0.3214 2.7357 -2.3673 19 14 -1.7597 3.8275 -3.8228 20 1 -1.2299 4.1982 -5.1596 21 1 -2.3646 2.4729 -3.8882 22 1 -2.7922 4.8114 -3.4093 23 7 1.9099 3.9928 -0.9915 24 1 -0.3633 0.5896 0.8418 25 1 -0.3634 0.4343 -0.9314 26 1 -0.3634 -1.0236 0.0896 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.7938 -0.5658 -0.0069 30 1 6.2243 -0.2398 -0.1785 31 1 7.1615 2.0261 -0.3716 32 1 5.6743 3.9831 -0.3865 33 1 4.1380 5.0796 1.2456 34 1 2.6289 7.0494 1.2176 35 1 0.6356 7.0085 -0.2579 36 1 0.1567 1.9466 -2.9068 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239557561.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:20 Heat of formation + Delta-G solvation = 1.798721 kcal Electronic energy + Delta-G solvation = -20267.970544 eV Core-core repulsion = 17295.509210 eV Total energy + Delta-G solvation = -2972.461335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.01778 -39.67889 -38.14141 -35.48484 -33.43335 -32.48897 -32.19215 -30.84118 -29.82536 -27.40079 -24.91549 -24.30413 -23.16066 -22.26729 -21.69225 -19.31771 -18.90615 -17.43682 -16.79862 -16.61723 -16.45922 -16.29079 -15.83969 -15.47651 -14.99707 -14.36577 -14.29257 -14.11432 -13.76374 -13.65042 -13.30354 -12.92327 -12.83107 -12.75283 -12.58745 -12.54266 -12.38923 -12.15136 -11.77476 -11.53860 -11.42760 -11.14012 -10.22997 -9.82948 -9.38284 -9.34650 -8.72295 -8.18299 -6.40679 0.26212 0.65012 1.05084 1.28413 1.40215 1.51546 1.54387 2.25558 2.57781 2.84088 3.04934 3.81976 3.93042 4.06396 4.11476 4.17988 4.28901 4.39804 4.41998 4.48057 4.61546 4.70012 4.76593 4.89947 4.95919 4.98430 5.01209 5.11107 5.24248 5.31700 5.43052 5.57581 5.60666 5.69296 5.76836 5.90457 6.06843 6.21180 6.33565 6.79396 6.85711 7.03775 8.25353 8.52026 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.015701 B = 0.008183 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.883966 B = 3420.897386 C = 4544.930973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.055 3.945 3 O -0.301 6.301 4 C 0.140 3.860 5 C -0.224 4.224 6 C -0.077 4.077 7 C -0.163 4.163 8 C -0.077 4.077 9 C -0.094 4.094 10 C 0.169 3.831 11 C -0.309 4.309 12 C -0.058 4.058 13 C -0.306 4.306 14 C 0.221 3.779 15 C -0.469 4.469 16 H 0.081 0.919 17 C 0.028 3.972 18 N -0.720 5.720 19 Si 0.975 3.025 20 H -0.268 1.268 21 H -0.267 1.267 22 H -0.260 1.260 23 N -0.477 5.477 24 H 0.043 0.957 25 H 0.046 0.954 26 H 0.104 0.896 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.145 0.855 30 H 0.160 0.840 31 H 0.155 0.845 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.131 0.869 35 H 0.105 0.895 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.062 -8.271 2.710 10.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.020 4.020 3 O -0.213 6.213 4 C 0.093 3.907 5 C -0.243 4.243 6 C -0.094 4.094 7 C -0.181 4.181 8 C -0.096 4.096 9 C -0.096 4.096 10 C 0.024 3.976 11 C -0.332 4.332 12 C -0.082 4.082 13 C -0.329 4.329 14 C 0.096 3.904 15 C -0.500 4.500 16 H 0.099 0.901 17 C -0.196 4.196 18 N -0.340 5.340 19 Si 0.796 3.204 20 H -0.193 1.193 21 H -0.192 1.192 22 H -0.183 1.183 23 N -0.190 5.190 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.122 0.878 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.163 0.837 30 H 0.177 0.823 31 H 0.173 0.827 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.149 0.851 35 H 0.123 0.877 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.623 -9.079 2.182 10.900 hybrid contribution -0.635 0.998 0.024 1.183 sum 4.988 -8.082 2.205 9.750 Atomic orbital electron populations 1.21664 0.93096 1.02857 1.02043 1.22841 0.96140 0.81909 1.01133 1.86422 1.18900 1.29398 1.86626 1.19370 0.83514 0.93583 0.94276 1.21427 0.94980 0.97644 1.10228 1.21335 0.93887 0.98206 0.96021 1.21228 1.00697 0.91708 1.04497 1.21178 0.90396 1.00419 0.97594 1.18382 0.93423 0.90183 1.07602 1.20184 0.92396 0.92146 0.92897 1.21516 1.05118 0.97052 1.09490 1.21140 0.93414 0.97333 0.96302 1.21942 1.02757 1.01695 1.06499 1.19052 0.92475 0.87803 0.91055 1.19814 1.08000 0.98965 1.23257 0.90071 1.26804 0.99622 0.94231 0.98929 1.70289 1.32932 1.00679 1.30138 0.85324 0.78215 0.78731 0.78148 1.19300 1.19167 1.18338 1.68849 1.02519 1.26130 1.21473 0.93761 0.93466 0.87793 0.92015 0.91103 0.83734 0.82293 0.82720 0.85261 0.86428 0.85100 0.87715 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 10.28 71.98 0.74 -3.75 16 2 C 0.05 1.82 5.47 71.98 0.39 2.21 16 3 O -0.30 -13.53 9.03 -91.27 -0.82 -14.36 16 4 C 0.14 5.86 6.65 22.76 0.15 6.01 16 5 C -0.22 -7.09 9.03 22.34 0.20 -6.89 16 6 C -0.08 -2.00 10.03 22.30 0.22 -1.77 16 7 C -0.16 -4.51 10.03 22.25 0.22 -4.29 16 8 C -0.08 -2.75 9.43 22.48 0.21 -2.54 16 9 C -0.09 -4.22 5.62 -19.96 -0.11 -4.33 16 10 C 0.17 8.83 6.08 42.14 0.26 9.09 16 11 C -0.31 -14.73 9.49 22.79 0.22 -14.52 16 12 C -0.06 -2.72 10.15 22.39 0.23 -2.49 16 13 C -0.31 -16.11 9.83 22.89 0.23 -15.89 16 14 C 0.22 12.97 6.53 40.25 0.26 13.23 16 15 C -0.47 -26.56 9.13 23.47 0.21 -26.34 16 16 H 0.08 4.35 7.85 -2.91 -0.02 4.33 16 17 C 0.03 1.46 5.48 85.29 0.47 1.92 16 18 N -0.72 -38.73 11.52 21.83 0.25 -38.48 16 19 Si 0.97 39.30 29.57 68.60 2.03 41.33 16 20 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 21 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 22 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 23 N -0.48 -27.74 7.12 -178.25 -1.27 -29.01 16 24 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.06 1.89 7.61 -2.39 -0.02 1.87 16 28 H 0.07 1.93 7.72 -2.39 -0.02 1.91 16 29 H 0.15 3.73 6.32 -2.91 -0.02 3.71 16 30 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 31 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.13 4.31 7.98 -2.91 -0.02 4.29 16 33 H 0.12 4.88 7.98 -2.91 -0.02 4.85 16 34 H 0.13 5.03 8.06 -2.91 -0.02 5.01 16 35 H 0.10 5.11 8.06 -2.91 -0.02 5.09 16 36 H 0.27 13.44 8.30 -92.71 -0.77 12.67 16 Total: -1.00 -69.70 312.22 5.16 -64.53 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 1.07 Total: 26.33 kcal Atomic # 6 Polarization: -54.25 SS G_CDS: 3.90 Total: -50.35 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -1.02 Total: -67.49 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.82 Total: -14.36 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -69.70 5.16 -64.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239557561.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.333 kcal (2) G-P(sol) polarization free energy of solvation -69.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds