Wall clock time and date at job start Mon Mar 30 2020 00:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47442 * 2 1 4 4 C 1.35772 * 116.99962 * 179.97438 * 3 2 1 5 5 C 1.38565 * 120.14462 * 0.02562 * 4 3 2 6 6 C 1.38179 * 120.09059 * 180.02562 * 5 4 3 7 7 C 1.38525 * 120.37019 * 359.97323 * 6 5 4 8 8 C 1.37860 * 120.28155 * 0.02562 * 7 6 5 9 9 C 1.39637 * 119.90344 * 0.02562 * 8 7 6 10 10 C 1.47823 * 120.17930 * 180.02562 * 9 8 7 11 11 C 1.40343 * 120.35194 * 309.69346 * 10 9 8 12 12 C 1.36633 * 118.60403 * 179.77215 * 11 10 9 13 13 C 1.40902 * 119.26203 * 0.50733 * 12 11 10 14 14 C 1.40932 * 119.67618 * 179.71271 * 13 12 11 15 15 H 1.07997 * 119.99994 * 0.02815 * 14 13 12 16 16 C 1.40085 * 120.00209 * 180.02562 * 14 13 12 17 17 N 1.30730 * 119.99815 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00035 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46857 * 60.00655 * 18 16 14 20 20 H 1.48500 * 109.46960 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47089 * 300.00439 * 18 16 14 22 22 N 1.33805 * 120.65024 * 359.74167 * 13 12 11 23 23 C 1.31169 * 121.51078 * 359.97438 * 22 13 12 24 24 H 1.09001 * 109.46947 * 59.99498 * 1 2 3 25 25 H 1.08998 * 109.47347 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46746 * 300.00420 * 1 2 3 27 27 H 1.09000 * 109.47442 * 239.99842 * 2 1 3 28 28 H 1.08998 * 109.47213 * 120.00053 * 2 1 3 29 29 H 1.08004 * 119.95608 * 359.97438 * 5 4 3 30 30 H 1.08002 * 119.82058 * 179.97438 * 6 5 4 31 31 H 1.07997 * 119.85972 * 179.74863 * 7 6 5 32 32 H 1.07998 * 120.04599 * 179.97438 * 8 7 6 33 33 H 1.07996 * 120.69698 * 0.03150 * 11 10 9 34 34 H 1.08001 * 120.36591 * 180.24728 * 12 11 10 35 35 H 0.97000 * 119.99655 * 179.97438 * 17 16 14 36 36 H 1.07999 * 119.66676 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3525 1.5251 0.0005 5 6 4.1992 0.4283 0.0005 6 6 5.5690 0.6105 0.0016 7 6 6.1056 1.8876 0.0022 8 6 5.2773 2.9897 0.0022 9 6 3.8914 2.8189 0.0022 10 6 2.9976 3.9963 0.0016 11 6 3.1848 5.0292 0.9330 12 6 2.3408 6.1031 0.8974 13 6 1.3078 6.1358 -0.0603 14 6 0.4285 7.2363 -0.1009 15 1 0.5485 8.0495 0.5996 16 6 -0.6013 7.2756 -1.0499 17 7 -0.7468 6.2910 -1.8975 18 14 -1.7672 8.7341 -1.1032 19 1 -0.9948 9.9761 -1.3604 20 1 -2.7603 8.5344 -2.1890 21 1 -2.4736 8.8509 0.1978 22 7 1.1531 5.1318 -0.9313 23 6 1.9506 4.0904 -0.9257 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.7881 -0.5705 0.0005 30 1 6.2249 -0.2475 0.0020 31 1 7.1773 2.0205 0.0071 32 1 5.6997 3.9836 0.0030 33 1 3.9819 4.9784 1.6599 34 1 2.4615 6.9159 1.5983 35 1 -1.4600 6.3181 -2.5544 36 1 1.7988 3.2971 -1.6426 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239558809.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:30 Heat of formation + Delta-G solvation = 11.875797 kcal Electronic energy + Delta-G solvation = -19582.689369 eV Core-core repulsion = 16610.665010 eV Total energy + Delta-G solvation = -2972.024360 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.76214 -37.98699 -36.93312 -33.79881 -32.01488 -31.34539 -30.41041 -29.47840 -28.46498 -25.49019 -23.75252 -22.28343 -21.79863 -20.98806 -20.22101 -17.77134 -17.47565 -15.84504 -15.74894 -15.59536 -15.21609 -14.26013 -14.24100 -13.97173 -13.50109 -13.13187 -12.93182 -12.56860 -12.39810 -12.10304 -12.00227 -11.67781 -11.53343 -11.25358 -11.11921 -11.07730 -10.98675 -10.62526 -10.47802 -10.24086 -9.89256 -9.42244 -8.63866 -8.20636 -7.91725 -7.52970 -7.15366 -6.42655 -4.51800 1.66967 1.86289 2.78614 3.05834 3.07953 3.13802 3.19915 3.61289 3.90628 4.23457 4.73790 5.07885 5.08835 5.21500 5.29117 5.38808 5.45284 5.66737 5.75861 5.89758 5.96693 5.97189 6.10796 6.17288 6.19052 6.26611 6.49814 6.67719 6.76412 6.84274 6.89581 6.97490 7.09115 7.24177 7.43454 7.59185 7.79314 7.95091 8.04443 8.20644 8.61909 8.91383 10.12071 10.27696 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.022908 B = 0.005198 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.968944 B = 5385.341610 C = 6312.486260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.297 6.297 4 C 0.119 3.881 5 C -0.209 4.209 6 C -0.111 4.111 7 C -0.155 4.155 8 C -0.095 4.095 9 C -0.008 4.008 10 C -0.266 4.266 11 C -0.037 4.037 12 C -0.276 4.276 13 C 0.255 3.745 14 C -0.420 4.420 15 H 0.084 0.916 16 C 0.067 3.933 17 N -0.706 5.706 18 Si 0.909 3.091 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.264 1.264 22 N -0.489 5.489 23 C 0.169 3.831 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.275 0.725 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.876 -9.587 1.920 10.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.210 6.210 4 C 0.073 3.927 5 C -0.228 4.228 6 C -0.130 4.130 7 C -0.174 4.174 8 C -0.114 4.114 9 C -0.009 4.009 10 C -0.272 4.272 11 C -0.060 4.060 12 C -0.298 4.298 13 C 0.131 3.869 14 C -0.451 4.451 15 H 0.102 0.898 16 C -0.160 4.160 17 N -0.326 5.326 18 Si 0.733 3.267 19 H -0.188 1.188 20 H -0.201 1.201 21 H -0.189 1.189 22 N -0.201 5.201 23 C 0.001 3.999 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.141 0.859 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.086 0.914 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.849 -9.403 1.142 10.224 hybrid contribution 0.365 0.183 0.642 0.761 sum 4.214 -9.220 1.784 10.293 Atomic orbital electron populations 1.21745 0.92996 1.02066 1.04047 1.22686 0.95863 0.82981 1.00496 1.86230 1.18877 1.27621 1.88303 1.19193 0.82322 0.93470 0.97680 1.21052 0.94392 0.97402 1.09919 1.20737 0.94068 0.96862 1.01304 1.20874 0.99171 0.92573 1.04733 1.21136 0.91875 0.98618 0.99744 1.18294 0.92468 0.90269 0.99882 1.18865 1.04400 0.97213 1.06688 1.20560 0.96767 0.92938 0.95757 1.21371 1.02391 1.00428 1.05639 1.18634 0.89779 0.91357 0.87098 1.19629 1.09040 1.03141 1.13251 0.89770 1.26139 0.98102 0.97009 0.94746 1.70137 1.24586 1.27654 1.10254 0.86369 0.79805 0.81622 0.78951 1.18838 1.20121 1.18855 1.68799 1.25655 1.01140 1.24466 1.22623 0.88620 0.94935 0.93746 0.91234 0.90991 0.91522 0.92642 0.92791 0.86354 0.86848 0.86763 0.85911 0.88806 0.88374 0.91403 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 37.16 0.38 -1.51 16 2 C 0.06 0.76 5.46 37.16 0.20 0.96 16 3 O -0.30 -5.57 8.50 -19.03 -0.16 -5.73 16 4 C 0.12 2.20 6.61 -38.74 -0.26 1.95 16 5 C -0.21 -3.20 9.03 -39.48 -0.36 -3.56 16 6 C -0.11 -1.58 10.03 -39.50 -0.40 -1.97 16 7 C -0.16 -2.29 10.03 -39.61 -0.40 -2.69 16 8 C -0.10 -1.66 9.54 -39.20 -0.37 -2.03 16 9 C -0.01 -0.15 5.50 -104.73 -0.58 -0.73 16 10 C -0.27 -6.20 5.31 -104.46 -0.55 -6.76 16 11 C -0.04 -0.85 9.61 -39.37 -0.38 -1.22 16 12 C -0.28 -6.88 9.76 -39.15 -0.38 -7.26 16 13 C 0.25 7.06 6.55 -84.98 -0.56 6.51 16 14 C -0.42 -11.24 9.12 -37.87 -0.35 -11.59 16 15 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 16 C 0.07 1.69 5.50 -17.33 -0.10 1.59 16 17 N -0.71 -18.81 11.44 55.55 0.64 -18.18 16 18 Si 0.91 18.40 29.56 -169.99 -5.02 13.38 16 19 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 20 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 21 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 22 N -0.49 -13.77 7.83 -10.83 -0.08 -13.85 16 23 C 0.17 4.29 9.97 -17.11 -0.17 4.12 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.67 7.66 -51.93 -0.40 0.28 16 28 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 29 H 0.12 1.51 6.30 -52.48 -0.33 1.18 16 30 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.12 2.02 8.05 -52.49 -0.42 1.60 16 33 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 34 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 35 H 0.27 6.61 8.29 -40.82 -0.34 6.28 16 36 H 0.12 2.84 7.69 -52.49 -0.40 2.44 16 LS Contribution 311.11 15.07 4.69 4.69 Total: -1.00 -29.96 311.11 -8.66 -38.62 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -4.46 Total: 5.27 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: -4.25 Total: -24.19 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.55 Total: -32.03 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.16 Total: -5.73 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.02 Total: 13.38 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.96 -8.66 -38.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239558809.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.496 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds