Wall clock time and date at job start Mon Mar 30 2020 00:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47442 * 2 1 4 4 C 1.35772 * 116.99962 * 179.97438 * 3 2 1 5 5 C 1.38565 * 120.14462 * 0.02562 * 4 3 2 6 6 C 1.38179 * 120.09059 * 180.02562 * 5 4 3 7 7 C 1.38525 * 120.37019 * 359.97323 * 6 5 4 8 8 C 1.37860 * 120.28155 * 0.02562 * 7 6 5 9 9 C 1.39637 * 119.90344 * 0.02562 * 8 7 6 10 10 C 1.47823 * 120.17930 * 180.02562 * 9 8 7 11 11 C 1.40343 * 120.35194 * 309.69346 * 10 9 8 12 12 C 1.36633 * 118.60403 * 179.77215 * 11 10 9 13 13 C 1.40902 * 119.26203 * 0.50733 * 12 11 10 14 14 C 1.40932 * 119.67618 * 179.71271 * 13 12 11 15 15 H 1.07997 * 119.99994 * 0.02815 * 14 13 12 16 16 C 1.40085 * 120.00209 * 180.02562 * 14 13 12 17 17 N 1.30730 * 119.99815 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00035 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46857 * 60.00655 * 18 16 14 20 20 H 1.48500 * 109.46960 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47089 * 300.00439 * 18 16 14 22 22 N 1.33805 * 120.65024 * 359.74167 * 13 12 11 23 23 C 1.31169 * 121.51078 * 359.97438 * 22 13 12 24 24 H 1.09001 * 109.46947 * 59.99498 * 1 2 3 25 25 H 1.08998 * 109.47347 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46746 * 300.00420 * 1 2 3 27 27 H 1.09000 * 109.47442 * 239.99842 * 2 1 3 28 28 H 1.08998 * 109.47213 * 120.00053 * 2 1 3 29 29 H 1.08004 * 119.95608 * 359.97438 * 5 4 3 30 30 H 1.08002 * 119.82058 * 179.97438 * 6 5 4 31 31 H 1.07997 * 119.85972 * 179.74863 * 7 6 5 32 32 H 1.07998 * 120.04599 * 179.97438 * 8 7 6 33 33 H 1.07996 * 120.69698 * 0.03150 * 11 10 9 34 34 H 1.08001 * 120.36591 * 180.24728 * 12 11 10 35 35 H 0.97000 * 119.99655 * 179.97438 * 17 16 14 36 36 H 1.07999 * 119.66676 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3525 1.5251 0.0005 5 6 4.1992 0.4283 0.0005 6 6 5.5690 0.6105 0.0016 7 6 6.1056 1.8876 0.0022 8 6 5.2773 2.9897 0.0022 9 6 3.8914 2.8189 0.0022 10 6 2.9976 3.9963 0.0016 11 6 3.1848 5.0292 0.9330 12 6 2.3408 6.1031 0.8974 13 6 1.3078 6.1358 -0.0603 14 6 0.4285 7.2363 -0.1009 15 1 0.5485 8.0495 0.5996 16 6 -0.6013 7.2756 -1.0499 17 7 -0.7468 6.2910 -1.8975 18 14 -1.7672 8.7341 -1.1032 19 1 -0.9948 9.9761 -1.3604 20 1 -2.7603 8.5344 -2.1890 21 1 -2.4736 8.8509 0.1978 22 7 1.1531 5.1318 -0.9313 23 6 1.9506 4.0904 -0.9257 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.7881 -0.5705 0.0005 30 1 6.2249 -0.2475 0.0020 31 1 7.1773 2.0205 0.0071 32 1 5.6997 3.9836 0.0030 33 1 3.9819 4.9784 1.6599 34 1 2.4615 6.9159 1.5983 35 1 -1.4600 6.3181 -2.5544 36 1 1.7988 3.2971 -1.6426 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239558809.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:30 Heat of formation + Delta-G solvation = -4.257241 kcal Electronic energy + Delta-G solvation = -19583.388950 eV Core-core repulsion = 16610.665010 eV Total energy + Delta-G solvation = -2972.723941 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.11548 -39.81470 -38.23125 -35.64189 -33.52112 -32.68321 -32.24699 -30.86123 -30.01368 -27.27686 -24.94799 -23.91481 -23.57164 -22.33001 -21.79035 -19.40805 -19.02919 -17.52520 -17.10815 -16.92935 -16.63093 -15.96236 -15.88290 -15.45037 -14.95177 -14.42469 -14.31353 -14.16568 -13.96156 -13.72220 -13.36948 -13.07196 -12.88639 -12.78653 -12.72570 -12.59626 -12.41798 -12.25634 -11.84518 -11.59271 -11.46918 -11.22184 -10.28111 -9.98054 -9.49120 -9.39418 -8.76784 -8.30659 -6.49324 0.29180 0.60070 1.01061 1.23265 1.39561 1.53009 1.56383 2.21464 2.43412 2.78885 3.00119 3.89458 3.96092 4.04038 4.05982 4.17450 4.23774 4.30201 4.35359 4.38843 4.55936 4.59846 4.69516 4.86975 4.91538 4.92774 4.97395 5.16643 5.17130 5.20870 5.44583 5.46776 5.57667 5.67481 5.74373 5.92444 6.06197 6.12457 6.25986 6.68875 6.70855 6.94311 8.17628 8.41823 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.022908 B = 0.005198 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.968944 B = 5385.341610 C = 6312.486260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.334 6.334 4 C 0.105 3.895 5 C -0.208 4.208 6 C -0.094 4.094 7 C -0.153 4.153 8 C -0.097 4.097 9 C -0.057 4.057 10 C -0.246 4.246 11 C -0.042 4.042 12 C -0.289 4.289 13 C 0.219 3.781 14 C -0.460 4.460 15 H 0.093 0.907 16 C 0.021 3.979 17 N -0.752 5.752 18 Si 0.991 3.009 19 H -0.256 1.256 20 H -0.268 1.268 21 H -0.257 1.257 22 N -0.522 5.522 23 C 0.144 3.856 24 H 0.049 0.951 25 H 0.109 0.891 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.148 0.852 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.280 0.720 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.634 -11.374 2.564 13.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.249 6.249 4 C 0.060 3.940 5 C -0.226 4.226 6 C -0.112 4.112 7 C -0.171 4.171 8 C -0.116 4.116 9 C -0.059 4.059 10 C -0.251 4.251 11 C -0.066 4.066 12 C -0.311 4.311 13 C 0.095 3.905 14 C -0.491 4.491 15 H 0.111 0.889 16 C -0.201 4.201 17 N -0.374 5.374 18 Si 0.811 3.189 19 H -0.180 1.180 20 H -0.192 1.192 21 H -0.181 1.181 22 N -0.234 5.234 23 C -0.022 4.022 24 H 0.068 0.932 25 H 0.128 0.872 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.165 0.835 30 H 0.173 0.827 31 H 0.167 0.833 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.091 0.909 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.636 -11.228 1.789 12.689 hybrid contribution 0.045 0.452 0.481 0.661 sum 5.680 -10.775 2.269 12.391 Atomic orbital electron populations 1.21788 0.92670 1.03920 1.02249 1.23001 0.96206 0.81281 1.02232 1.86193 1.19498 1.30689 1.88509 1.19393 0.82752 0.93871 0.97985 1.21402 0.94768 0.97672 1.08787 1.21296 0.94021 0.98031 0.97838 1.21261 1.00633 0.91936 1.03263 1.21264 0.90985 0.99992 0.99317 1.18327 0.93290 0.89850 1.04386 1.19174 1.03257 0.98110 1.04543 1.20909 0.97131 0.92364 0.96185 1.21585 1.02274 1.01663 1.05555 1.19100 0.91270 0.91952 0.88162 1.19991 1.10495 1.03701 1.14882 0.88925 1.27113 0.99362 1.00020 0.93623 1.70252 1.25775 1.30048 1.11307 0.85138 0.77194 0.77356 0.79249 1.18023 1.19190 1.18134 1.68702 1.27151 1.02054 1.25535 1.22727 0.89905 0.94649 0.94898 0.93181 0.87245 0.93149 0.90803 0.90796 0.83483 0.82650 0.83307 0.85747 0.85787 0.86929 0.90925 0.86810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 10.28 71.98 0.74 -2.94 16 2 C 0.05 1.23 5.46 71.98 0.39 1.63 16 3 O -0.33 -12.64 8.50 -91.00 -0.77 -13.42 16 4 C 0.11 3.80 6.61 22.81 0.15 3.95 16 5 C -0.21 -5.63 9.03 22.33 0.20 -5.43 16 6 C -0.09 -2.18 10.03 22.32 0.22 -1.96 16 7 C -0.15 -3.87 10.03 22.25 0.22 -3.65 16 8 C -0.10 -3.20 9.54 22.52 0.21 -2.98 16 9 C -0.06 -2.27 5.50 -19.94 -0.11 -2.38 16 10 C -0.25 -11.78 5.31 -19.76 -0.10 -11.89 16 11 C -0.04 -1.99 9.61 22.41 0.22 -1.77 16 12 C -0.29 -14.90 9.76 22.55 0.22 -14.68 16 13 C 0.22 12.81 6.55 40.15 0.26 13.07 16 14 C -0.46 -25.77 9.12 23.38 0.21 -25.55 16 15 H 0.09 4.77 7.85 -2.91 -0.02 4.75 16 16 C 0.02 1.10 5.50 85.31 0.47 1.57 16 17 N -0.75 -42.15 11.44 21.85 0.25 -41.90 16 18 Si 0.99 38.72 29.56 68.60 2.03 40.75 16 19 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 20 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 21 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 22 N -0.52 -31.21 7.83 -188.18 -1.47 -32.69 16 23 C 0.14 7.75 9.97 85.26 0.85 8.60 16 24 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 25 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.07 1.63 7.66 -2.39 -0.02 1.61 16 28 H 0.07 1.61 7.66 -2.39 -0.02 1.59 16 29 H 0.15 3.07 6.30 -2.91 -0.02 3.06 16 30 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 31 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 32 H 0.12 3.92 8.05 -2.91 -0.02 3.90 16 33 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 34 H 0.11 5.29 8.06 -2.91 -0.02 5.27 16 35 H 0.28 14.14 8.29 -92.71 -0.77 13.37 16 36 H 0.11 5.97 7.69 -2.91 -0.02 5.94 16 Total: -1.00 -69.93 311.11 5.27 -64.66 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 1.08 Total: 27.03 kcal Atomic # 6 Polarization: -48.59 SS G_CDS: 4.16 Total: -44.43 kcal Atomic # 7 Polarization: -73.36 SS G_CDS: -1.22 Total: -74.59 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.77 Total: -13.42 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -69.93 5.27 -64.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239558809.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.400 kcal (2) G-P(sol) polarization free energy of solvation -69.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds