Wall clock time and date at job start Mon Mar 30 2020 00:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42900 * 109.47136 * 2 1 4 4 C 1.35760 * 117.00274 * 179.97438 * 3 2 1 5 5 C 1.38567 * 120.14234 * 0.02562 * 4 3 2 6 6 C 1.38187 * 120.09092 * 180.02562 * 5 4 3 7 7 C 1.38543 * 120.38986 * 359.97438 * 6 5 4 8 8 C 1.37830 * 120.28600 * 0.02562 * 7 6 5 9 9 C 1.39712 * 119.90265 * 359.97438 * 8 7 6 10 10 C 1.47667 * 120.18711 * 179.97438 * 9 8 7 11 11 C 1.39765 * 120.66121 * 64.74783 * 10 9 8 12 12 C 1.38330 * 118.47470 * 179.73320 * 11 10 9 13 13 C 1.39085 * 119.74006 * 0.51527 * 12 11 10 14 14 N 1.31269 * 121.35571 * 359.74696 * 13 12 11 15 15 C 1.33718 * 121.63817 * 0.02562 * 14 13 12 16 16 C 1.40756 * 119.94544 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99718 * 174.96246 * 16 15 14 18 18 C 1.40129 * 120.00025 * 354.95566 * 16 15 14 19 19 N 1.30711 * 120.00139 * 6.42097 * 18 16 15 20 20 Si 1.86803 * 119.99906 * 186.42052 * 18 16 15 21 21 H 1.48505 * 109.47019 * 94.98840 * 20 18 16 22 22 H 1.48504 * 109.47157 * 214.98314 * 20 18 16 23 23 H 1.48495 * 109.47429 * 334.98878 * 20 18 16 24 24 H 1.08997 * 109.47476 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47608 * 300.00326 * 1 2 3 26 26 H 1.09005 * 109.47401 * 60.00366 * 1 2 3 27 27 H 1.08999 * 109.47107 * 240.00076 * 2 1 3 28 28 H 1.09003 * 109.46898 * 119.99713 * 2 1 3 29 29 H 1.07999 * 119.95186 * 0.04264 * 5 4 3 30 30 H 1.08002 * 119.80135 * 179.72289 * 6 5 4 31 31 H 1.07998 * 119.85616 * 180.02562 * 7 6 5 32 32 H 1.08001 * 120.04851 * 180.02562 * 8 7 6 33 33 H 1.08004 * 120.75555 * 359.97438 * 11 10 9 34 34 H 1.08000 * 120.13319 * 180.26628 * 12 11 10 35 35 H 1.08000 * 119.32235 * 179.76517 * 13 12 11 36 36 H 0.96998 * 119.99618 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3522 1.5252 0.0005 5 6 4.1990 0.4285 0.0005 6 6 5.5688 0.6108 0.0016 7 6 6.1058 1.8879 0.0022 8 6 5.2782 2.9900 0.0022 9 6 3.8915 2.8196 0.0011 10 6 2.9988 3.9960 0.0017 11 6 2.9773 4.8749 -1.0848 12 6 2.1197 5.9593 -1.0390 13 6 1.3148 6.1557 0.0782 14 7 1.3458 5.3278 1.0964 15 6 2.1505 4.2599 1.1080 16 6 2.1545 3.3951 2.2185 17 1 2.7424 2.4893 2.1955 18 6 1.3958 3.7093 3.3540 19 7 0.5880 4.7368 3.3365 20 14 1.5389 2.6598 4.8926 21 1 2.5260 3.2709 5.8186 22 1 0.2157 2.5799 5.5622 23 1 1.9887 1.2944 4.5205 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 3.7879 -0.5702 -0.0006 30 1 6.2245 -0.2474 0.0061 31 1 7.1777 2.0204 0.0026 32 1 5.7009 3.9838 0.0022 33 1 3.6128 4.7089 -1.9421 34 1 2.0782 6.6530 -1.8657 35 1 0.6505 7.0067 0.1085 36 1 0.0626 4.9540 4.1224 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239560255.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:34 Heat of formation + Delta-G solvation = 16.280108 kcal Electronic energy + Delta-G solvation = -20390.451928 eV Core-core repulsion = 17418.618554 eV Total energy + Delta-G solvation = -2971.833375 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.60669 -37.87772 -36.72165 -33.60247 -32.20385 -31.22018 -30.16588 -29.35283 -28.03400 -25.58285 -23.60827 -22.54478 -21.43874 -20.88017 -20.04854 -17.58745 -17.39008 -15.84609 -15.54044 -15.29027 -15.12524 -14.38660 -14.08350 -14.01963 -13.36544 -12.93523 -12.77715 -12.58738 -12.23862 -12.02109 -11.89651 -11.47864 -11.40064 -11.21390 -11.12956 -10.96963 -10.87102 -10.50384 -10.24253 -10.19833 -9.78780 -9.34830 -8.44586 -8.07332 -7.70193 -7.50132 -7.14002 -6.39400 -4.44334 1.88224 2.06278 2.77709 3.04464 3.07927 3.11756 3.25952 3.82993 3.94992 4.39921 4.77859 5.24655 5.26778 5.37908 5.45507 5.55815 5.59272 5.81162 5.87160 5.99663 6.06118 6.13646 6.16152 6.25193 6.30916 6.43109 6.58803 6.67118 6.89973 6.92270 6.98777 7.11269 7.17888 7.39173 7.42737 7.64785 7.80606 8.10185 8.17522 8.31345 8.68336 9.00622 10.14242 10.31991 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012380 B = 0.009592 C = 0.007675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.197632 B = 2918.251478 C = 3647.241372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.283 6.283 4 C 0.139 3.861 5 C -0.218 4.218 6 C -0.105 4.105 7 C -0.162 4.162 8 C -0.088 4.088 9 C -0.006 4.006 10 C -0.223 4.223 11 C -0.036 4.036 12 C -0.324 4.324 13 C 0.129 3.871 14 N -0.484 5.484 15 C 0.277 3.723 16 C -0.404 4.404 17 H 0.083 0.917 18 C 0.070 3.930 19 N -0.711 5.711 20 Si 0.899 3.101 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.261 1.261 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.604 -7.790 -3.619 9.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.196 6.196 4 C 0.093 3.907 5 C -0.237 4.237 6 C -0.123 4.123 7 C -0.181 4.181 8 C -0.106 4.106 9 C -0.007 4.007 10 C -0.228 4.228 11 C -0.061 4.061 12 C -0.347 4.347 13 C -0.039 4.039 14 N -0.195 5.195 15 C 0.154 3.846 16 C -0.434 4.434 17 H 0.102 0.898 18 C -0.156 4.156 19 N -0.332 5.332 20 Si 0.723 3.277 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.185 1.185 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.139 0.861 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.134 0.866 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.731 -7.431 -2.714 8.369 hybrid contribution 0.709 -0.819 -0.082 1.086 sum 3.440 -8.250 -2.796 9.365 Atomic orbital electron populations 1.21719 0.93235 1.01771 1.03958 1.22652 0.95826 0.83390 1.00218 1.86308 1.18618 1.26987 1.87679 1.19224 0.82478 0.93322 0.95659 1.21057 0.94419 0.97441 1.10775 1.20725 0.94047 0.96779 1.00795 1.20815 0.99023 0.92572 1.05660 1.21121 0.91855 0.98500 0.99155 1.18100 0.92203 0.90340 1.00050 1.19146 1.06205 0.98341 0.99081 1.20831 0.96166 0.93467 0.95604 1.21150 1.08153 1.03410 1.01982 1.22558 0.94849 0.96655 0.89838 1.68751 1.21800 1.04408 1.24576 1.18445 0.86408 0.89508 0.90281 1.19503 1.21978 1.05248 0.96681 0.89849 1.26110 0.94083 0.95126 1.00289 1.70133 1.14261 1.20631 1.28153 0.86434 0.78572 0.81242 0.81414 1.19351 1.20020 1.18471 0.91242 0.91067 0.91795 0.93105 0.92706 0.86436 0.86975 0.86882 0.86098 0.88857 0.88928 0.86618 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 10.28 37.15 0.38 -1.77 16 2 C 0.05 0.88 5.46 37.15 0.20 1.08 16 3 O -0.28 -6.02 8.63 -18.99 -0.16 -6.19 16 4 C 0.14 2.89 5.41 -38.71 -0.21 2.68 16 5 C -0.22 -3.79 9.03 -39.48 -0.36 -4.14 16 6 C -0.11 -1.67 10.03 -39.49 -0.40 -2.06 16 7 C -0.16 -2.66 10.03 -39.62 -0.40 -3.06 16 8 C -0.09 -1.69 9.75 -39.18 -0.38 -2.07 16 9 C -0.01 -0.12 4.52 -104.75 -0.47 -0.60 16 10 C -0.22 -5.54 5.00 -104.08 -0.52 -6.06 16 11 C -0.04 -0.85 9.88 -38.98 -0.39 -1.23 16 12 C -0.32 -7.44 10.10 -39.23 -0.40 -7.84 16 13 C 0.13 3.20 11.17 -17.48 -0.20 3.01 16 14 N -0.48 -13.54 7.87 -10.90 -0.09 -13.62 16 15 C 0.28 7.63 6.40 -84.70 -0.54 7.09 16 16 C -0.40 -10.92 7.99 -37.92 -0.30 -11.22 16 17 H 0.08 2.21 5.85 -52.48 -0.31 1.91 16 18 C 0.07 1.79 5.49 -17.32 -0.10 1.70 16 19 N -0.71 -19.02 11.48 55.56 0.64 -18.39 16 20 Si 0.90 19.00 29.57 -169.99 -5.03 13.98 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.70 7.66 -51.93 -0.40 0.30 16 28 H 0.05 0.82 7.66 -51.93 -0.40 0.42 16 29 H 0.12 1.73 6.30 -52.49 -0.33 1.40 16 30 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 32 H 0.12 2.19 8.06 -52.49 -0.42 1.76 16 33 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 34 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 35 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 36 H 0.27 6.60 8.29 -40.82 -0.34 6.26 16 LS Contribution 307.95 15.07 4.64 4.64 Total: -1.00 -30.34 307.95 -8.44 -38.78 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.37 Total: 5.29 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -4.07 Total: -24.49 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.55 Total: -32.01 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.16 Total: -6.19 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.34 -8.44 -38.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239560255.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.056 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds