Wall clock time and date at job start Mon Mar 30 2020 00:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42900 * 109.47136 * 2 1 4 4 C 1.35760 * 117.00274 * 179.97438 * 3 2 1 5 5 C 1.38567 * 120.14234 * 0.02562 * 4 3 2 6 6 C 1.38187 * 120.09092 * 180.02562 * 5 4 3 7 7 C 1.38543 * 120.38986 * 359.97438 * 6 5 4 8 8 C 1.37830 * 120.28600 * 0.02562 * 7 6 5 9 9 C 1.39712 * 119.90265 * 359.97438 * 8 7 6 10 10 C 1.47667 * 120.18711 * 179.97438 * 9 8 7 11 11 C 1.39765 * 120.66121 * 64.74783 * 10 9 8 12 12 C 1.38330 * 118.47470 * 179.73320 * 11 10 9 13 13 C 1.39085 * 119.74006 * 0.51527 * 12 11 10 14 14 N 1.31269 * 121.35571 * 359.74696 * 13 12 11 15 15 C 1.33718 * 121.63817 * 0.02562 * 14 13 12 16 16 C 1.40756 * 119.94544 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99718 * 174.96246 * 16 15 14 18 18 C 1.40129 * 120.00025 * 354.95566 * 16 15 14 19 19 N 1.30711 * 120.00139 * 6.42097 * 18 16 15 20 20 Si 1.86803 * 119.99906 * 186.42052 * 18 16 15 21 21 H 1.48505 * 109.47019 * 94.98840 * 20 18 16 22 22 H 1.48504 * 109.47157 * 214.98314 * 20 18 16 23 23 H 1.48495 * 109.47429 * 334.98878 * 20 18 16 24 24 H 1.08997 * 109.47476 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47608 * 300.00326 * 1 2 3 26 26 H 1.09005 * 109.47401 * 60.00366 * 1 2 3 27 27 H 1.08999 * 109.47107 * 240.00076 * 2 1 3 28 28 H 1.09003 * 109.46898 * 119.99713 * 2 1 3 29 29 H 1.07999 * 119.95186 * 0.04264 * 5 4 3 30 30 H 1.08002 * 119.80135 * 179.72289 * 6 5 4 31 31 H 1.07998 * 119.85616 * 180.02562 * 7 6 5 32 32 H 1.08001 * 120.04851 * 180.02562 * 8 7 6 33 33 H 1.08004 * 120.75555 * 359.97438 * 11 10 9 34 34 H 1.08000 * 120.13319 * 180.26628 * 12 11 10 35 35 H 1.08000 * 119.32235 * 179.76517 * 13 12 11 36 36 H 0.96998 * 119.99618 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3522 1.5252 0.0005 5 6 4.1990 0.4285 0.0005 6 6 5.5688 0.6108 0.0016 7 6 6.1058 1.8879 0.0022 8 6 5.2782 2.9900 0.0022 9 6 3.8915 2.8196 0.0011 10 6 2.9988 3.9960 0.0017 11 6 2.9773 4.8749 -1.0848 12 6 2.1197 5.9593 -1.0390 13 6 1.3148 6.1557 0.0782 14 7 1.3458 5.3278 1.0964 15 6 2.1505 4.2599 1.1080 16 6 2.1545 3.3951 2.2185 17 1 2.7424 2.4893 2.1955 18 6 1.3958 3.7093 3.3540 19 7 0.5880 4.7368 3.3365 20 14 1.5389 2.6598 4.8926 21 1 2.5260 3.2709 5.8186 22 1 0.2157 2.5799 5.5622 23 1 1.9887 1.2944 4.5205 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 3.7879 -0.5702 -0.0006 30 1 6.2245 -0.2474 0.0061 31 1 7.1777 2.0204 0.0026 32 1 5.7009 3.9838 0.0022 33 1 3.6128 4.7089 -1.9421 34 1 2.0782 6.6530 -1.8657 35 1 0.6505 7.0067 0.1085 36 1 0.0626 4.9540 4.1224 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239560255.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:34 Heat of formation + Delta-G solvation = -0.181231 kcal Electronic energy + Delta-G solvation = -20391.165746 eV Core-core repulsion = 17418.618554 eV Total energy + Delta-G solvation = -2972.547192 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.07433 -39.68031 -38.12809 -35.50459 -33.78822 -32.55201 -32.03265 -30.79838 -29.61790 -27.47926 -24.92866 -24.13853 -23.25166 -22.31189 -21.64823 -19.34604 -18.94436 -17.57075 -16.94365 -16.78729 -16.58676 -16.10491 -15.94501 -15.39349 -14.90138 -14.35144 -14.32466 -14.10770 -13.87449 -13.61563 -13.33949 -13.00321 -12.92117 -12.82575 -12.69268 -12.55234 -12.33710 -12.17708 -11.82846 -11.52367 -11.41033 -11.21647 -10.14140 -9.78626 -9.43259 -9.35571 -8.73243 -8.27395 -6.40455 0.43706 0.67093 0.97050 1.22633 1.34144 1.47714 1.50925 2.19652 2.52789 2.86352 3.00257 3.93771 4.00453 4.08098 4.10669 4.22239 4.29340 4.35505 4.38244 4.43715 4.63461 4.66817 4.72240 4.83127 4.94053 4.97650 5.03973 5.19906 5.22729 5.26009 5.43359 5.59833 5.62905 5.75309 5.79144 5.93300 6.11159 6.23396 6.35069 6.75103 6.81020 7.07005 8.22790 8.45361 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012380 B = 0.009592 C = 0.007675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.197632 B = 2918.251478 C = 3647.241372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.046 3.954 3 O -0.323 6.323 4 C 0.119 3.881 5 C -0.218 4.218 6 C -0.092 4.092 7 C -0.158 4.158 8 C -0.097 4.097 9 C -0.051 4.051 10 C -0.221 4.221 11 C -0.052 4.052 12 C -0.315 4.315 13 C 0.103 3.897 14 N -0.523 5.523 15 C 0.246 3.754 16 C -0.429 4.429 17 H 0.079 0.921 18 C 0.025 3.975 19 N -0.752 5.752 20 Si 0.971 3.029 21 H -0.263 1.263 22 H -0.264 1.264 23 H -0.257 1.257 24 H 0.109 0.891 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.145 0.855 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.432 -10.171 -3.977 12.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 O -0.236 6.236 4 C 0.074 3.926 5 C -0.237 4.237 6 C -0.110 4.110 7 C -0.176 4.176 8 C -0.115 4.115 9 C -0.052 4.052 10 C -0.226 4.226 11 C -0.076 4.076 12 C -0.338 4.338 13 C -0.063 4.063 14 N -0.235 5.235 15 C 0.122 3.878 16 C -0.460 4.460 17 H 0.097 0.903 18 C -0.196 4.196 19 N -0.374 5.374 20 Si 0.791 3.209 21 H -0.188 1.188 22 H -0.188 1.188 23 H -0.181 1.181 24 H 0.127 0.873 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.162 0.838 30 H 0.173 0.827 31 H 0.167 0.833 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.153 0.847 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.559 -9.796 -3.103 11.242 hybrid contribution 0.226 -0.108 -0.135 0.285 sum 4.785 -9.904 -3.238 11.466 Atomic orbital electron populations 1.21754 0.92601 1.03776 1.02174 1.22964 0.96426 0.81745 1.01732 1.86259 1.19380 1.29989 1.88022 1.19425 0.82829 0.93834 0.96546 1.21410 0.94928 0.97640 1.09690 1.21263 0.93912 0.97984 0.97866 1.21206 1.00496 0.91906 1.03957 1.21254 0.91119 0.99803 0.99365 1.18227 0.93107 0.90182 1.03714 1.19514 1.05487 0.99311 0.98295 1.21214 0.96742 0.93488 0.96185 1.21493 1.06719 1.03543 1.02041 1.22978 0.95976 0.97144 0.90171 1.68668 1.23047 1.05507 1.26304 1.18877 0.87379 0.89915 0.91662 1.19618 1.23175 1.05514 0.97693 0.90304 1.26959 0.93285 0.96262 1.03134 1.70227 1.15409 1.22455 1.29352 0.85366 0.79010 0.79329 0.77162 1.18764 1.18803 1.18074 0.87268 0.93695 0.92681 0.90629 0.91801 0.83756 0.82680 0.83329 0.86122 0.86348 0.85750 0.84746 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 10.28 71.98 0.74 -3.40 16 2 C 0.05 1.42 5.46 71.98 0.39 1.82 16 3 O -0.32 -13.92 8.63 -90.86 -0.78 -14.71 16 4 C 0.12 4.91 5.41 22.83 0.12 5.03 16 5 C -0.22 -6.96 9.03 22.34 0.20 -6.76 16 6 C -0.09 -2.53 10.03 22.33 0.22 -2.31 16 7 C -0.16 -4.63 10.03 22.25 0.22 -4.41 16 8 C -0.10 -3.63 9.75 22.53 0.22 -3.41 16 9 C -0.05 -2.27 4.52 -19.95 -0.09 -2.36 16 10 C -0.22 -11.33 5.00 -19.52 -0.10 -11.43 16 11 C -0.05 -2.45 9.88 22.66 0.22 -2.22 16 12 C -0.31 -14.53 10.10 22.49 0.23 -14.30 16 13 C 0.10 5.26 11.17 84.98 0.95 6.21 16 14 N -0.52 -30.59 7.87 -188.39 -1.48 -32.08 16 15 C 0.25 14.14 6.40 40.37 0.26 14.40 16 16 C -0.43 -24.17 7.99 23.34 0.19 -23.98 16 17 H 0.08 4.35 5.85 -2.91 -0.02 4.34 16 18 C 0.03 1.35 5.49 85.32 0.47 1.82 16 19 N -0.75 -41.98 11.48 21.86 0.25 -41.73 16 20 Si 0.97 39.81 29.57 68.60 2.03 41.84 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 22 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 24 H 0.11 2.15 8.14 -2.39 -0.02 2.14 16 25 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.08 1.92 7.66 -2.39 -0.02 1.90 16 28 H 0.06 1.82 7.66 -2.39 -0.02 1.80 16 29 H 0.14 3.71 6.30 -2.91 -0.02 3.69 16 30 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 31 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 32 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 33 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 34 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 35 H 0.14 6.07 8.06 -2.91 -0.02 6.04 16 36 H 0.28 13.99 8.29 -92.71 -0.77 13.22 16 Total: -1.00 -69.76 307.95 5.34 -64.42 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 1.08 Total: 27.56 kcal Atomic # 6 Polarization: -49.55 SS G_CDS: 4.25 Total: -45.30 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -1.23 Total: -73.81 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.78 Total: -14.71 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -69.76 5.34 -64.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239560255.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.237 kcal (2) G-P(sol) polarization free energy of solvation -69.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds