Wall clock time and date at job start Mon Mar 30 2020 00:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47415 * 2 1 4 4 C 1.35851 * 117.00422 * 179.97438 * 3 2 1 5 5 C 1.38851 * 119.93602 * 179.97438 * 4 3 2 6 6 C 1.37885 * 120.06439 * 179.97438 * 5 4 3 7 7 C 1.39403 * 119.93293 * 0.02562 * 6 5 4 8 8 C 1.48325 * 120.06524 * 179.97438 * 7 6 5 9 9 C 1.40067 * 120.82115 * 0.02562 * 8 7 6 10 10 C 1.38476 * 119.42006 * 179.97438 * 9 8 7 11 11 N 1.31493 * 121.15386 * 359.97438 * 10 9 8 12 12 C 1.33657 * 121.79455 * 359.97438 * 11 10 9 13 13 C 1.41426 * 119.77706 * 179.97438 * 12 11 10 14 14 H 1.08007 * 120.00398 * 187.07639 * 13 12 11 15 15 C 1.40028 * 120.00304 * 7.07138 * 13 12 11 16 16 N 1.30742 * 120.00582 * 182.55912 * 15 13 12 17 17 Si 1.86808 * 119.99789 * 2.56433 * 15 13 12 18 18 H 1.48499 * 109.47070 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.46833 * 299.99945 * 17 15 13 20 20 H 1.48501 * 109.46996 * 59.99803 * 17 15 13 21 21 C 1.39344 * 120.82572 * 180.23117 * 8 7 6 22 22 C 1.39403 * 119.87018 * 0.27444 * 7 6 5 23 23 C 1.37889 * 119.93216 * 359.42540 * 22 7 6 24 24 H 1.09002 * 109.46925 * 60.00010 * 1 2 3 25 25 H 1.08992 * 109.47190 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47373 * 300.00357 * 1 2 3 27 27 H 1.08996 * 109.46940 * 239.99795 * 2 1 3 28 28 H 1.09002 * 109.46925 * 119.99989 * 2 1 3 29 29 H 1.08006 * 119.96801 * 359.97438 * 5 4 3 30 30 H 1.07997 * 120.03006 * 180.02562 * 6 5 4 31 31 H 1.07999 * 120.29380 * 359.95359 * 9 8 7 32 32 H 1.08010 * 119.42561 * 179.97438 * 10 9 8 33 33 H 0.96999 * 119.99756 * 354.85168 * 16 15 13 34 34 H 1.07995 * 120.58693 * 0.04132 * 21 8 7 35 35 H 1.07999 * 120.02989 * 179.72939 * 22 7 6 36 36 H 1.08001 * 119.96255 * 180.30195 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3532 1.5252 0.0005 5 6 3.8824 2.8089 0.0000 6 6 5.2490 2.9927 0.0011 7 6 6.0994 1.8881 0.0022 8 6 7.5699 2.0823 0.0028 9 6 8.1238 3.3688 0.0028 10 6 9.5006 3.5166 0.0039 11 7 10.2971 2.4703 0.0054 12 6 9.8197 1.2219 0.0065 13 6 10.7154 0.1274 0.0075 14 1 10.3391 -0.8785 -0.1069 15 6 12.0901 0.3478 0.1568 16 7 12.9228 -0.6589 0.1076 17 14 12.7344 2.0805 0.4262 18 1 14.2135 2.0443 0.5539 19 1 12.3575 2.9339 -0.7291 20 1 12.1443 2.6404 1.6686 21 6 8.4345 0.9896 -0.0010 22 6 5.5651 0.6005 -0.0036 23 6 4.1977 0.4230 0.0015 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.2231 3.6643 -0.0012 30 1 5.6600 3.9914 0.0011 31 1 7.4827 4.2380 0.0017 32 1 9.9279 4.5086 0.0035 33 1 12.5843 -1.5656 0.0428 34 1 8.0464 -0.0182 -0.0051 35 1 6.2215 -0.2571 -0.0073 36 1 3.7832 -0.5743 0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239564324.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:50 Heat of formation + Delta-G solvation = -5.910367 kcal Electronic energy + Delta-G solvation = -18953.061225 eV Core-core repulsion = 15980.265599 eV Total energy + Delta-G solvation = -2972.795626 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.13592 -38.79374 -37.29410 -33.88404 -32.68030 -31.55855 -31.06991 -30.27403 -28.17690 -25.65856 -24.12166 -23.32124 -21.96200 -21.10164 -20.26435 -18.40456 -18.22139 -16.24335 -16.20377 -15.79531 -15.25268 -14.90087 -14.11989 -13.87420 -13.61217 -13.54633 -13.38784 -13.08044 -12.88849 -12.69467 -12.35881 -12.17139 -12.07216 -11.85357 -11.37736 -11.04063 -11.02751 -10.59791 -10.34379 -10.06772 -9.61719 -9.32515 -9.13935 -8.89782 -8.01969 -7.71476 -7.48133 -7.25913 -4.82520 1.21686 1.48698 2.52232 2.71712 3.10824 3.62307 3.66244 4.02281 4.05734 4.45161 4.65873 4.67373 4.69373 4.89683 4.98080 5.00968 5.16426 5.23631 5.48458 5.50610 5.50986 5.51275 5.67962 5.73216 5.77500 6.05067 6.19214 6.31385 6.36520 6.44989 6.51541 6.75451 6.84295 6.96178 7.18636 7.37137 7.41645 7.45338 7.64514 8.03335 8.24943 8.59672 9.44277 9.97953 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.039442 B = 0.003804 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.736237 B = 7359.293583 C = 8037.647927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.118 3.882 5 C -0.153 4.153 6 C -0.070 4.070 7 C -0.063 4.063 8 C 0.020 3.980 9 C -0.306 4.306 10 C 0.152 3.848 11 N -0.575 5.575 12 C 0.250 3.750 13 C -0.473 4.473 14 H 0.081 0.919 15 C 0.043 3.957 16 N -0.804 5.804 17 Si 1.156 2.844 18 H -0.333 1.333 19 H -0.279 1.279 20 H -0.293 1.293 21 C -0.246 4.246 22 C -0.070 4.070 23 C -0.208 4.208 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.107 0.893 32 H 0.129 0.871 33 H 0.283 0.717 34 H 0.107 0.893 35 H 0.129 0.871 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.587 2.161 0.017 18.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.234 6.234 4 C 0.073 3.927 5 C -0.172 4.172 6 C -0.088 4.088 7 C -0.063 4.063 8 C 0.014 3.986 9 C -0.329 4.329 10 C -0.008 4.008 11 N -0.294 5.294 12 C 0.128 3.872 13 C -0.505 4.505 14 H 0.099 0.901 15 C -0.178 4.178 16 N -0.425 5.425 17 Si 0.991 3.009 18 H -0.267 1.267 19 H -0.206 1.206 20 H -0.221 1.221 21 C -0.268 4.268 22 C -0.088 4.088 23 C -0.227 4.227 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.125 0.875 32 H 0.147 0.853 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.147 0.853 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.492 3.075 0.157 16.777 hybrid contribution -2.416 -1.592 -0.211 2.901 sum -18.909 1.483 -0.054 18.967 Atomic orbital electron populations 1.21769 0.92915 1.02729 1.03418 1.22747 0.95661 0.82308 1.01443 1.86017 1.19408 1.29003 1.88950 1.19016 0.81877 0.94229 0.97587 1.20312 0.95050 0.94541 1.07279 1.21111 0.91631 0.99134 0.96945 1.18934 0.92956 0.92741 1.01657 1.18645 0.89918 0.93963 0.96026 1.21171 0.95551 0.95539 1.20653 1.22040 0.90149 0.96519 0.92101 1.66510 1.37721 0.99446 1.25750 1.18586 0.90641 0.90099 0.87900 1.20789 0.93481 0.93831 1.42351 0.90114 1.27859 0.93279 1.08017 0.88676 1.70658 1.39083 1.01562 1.31223 0.81791 0.69805 0.70411 0.78881 1.26700 1.20644 1.22145 1.21716 0.93800 0.97029 1.14237 1.21142 0.94011 0.97269 0.96405 1.21126 0.94194 0.97765 1.09579 0.91586 0.90482 0.91589 0.92099 0.92093 0.85414 0.84866 0.87522 0.85321 0.90630 0.87514 0.85282 0.85731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.05 0.50 5.46 37.16 0.20 0.70 16 3 O -0.32 -4.05 10.13 -19.27 -0.20 -4.25 16 4 C 0.12 1.66 6.69 -39.13 -0.26 1.40 16 5 C -0.15 -2.15 9.97 -39.48 -0.39 -2.54 16 6 C -0.07 -1.08 9.44 -39.28 -0.37 -1.45 16 7 C -0.06 -1.11 5.88 -104.88 -0.62 -1.73 16 8 C 0.02 0.42 5.91 -104.65 -0.62 -0.20 16 9 C -0.31 -6.18 9.51 -38.81 -0.37 -6.55 16 10 C 0.15 3.32 11.17 -17.61 -0.20 3.13 16 11 N -0.58 -14.59 4.54 -11.21 -0.05 -14.64 16 12 C 0.25 6.53 6.39 -85.02 -0.54 5.98 16 13 C -0.47 -12.89 9.58 -37.70 -0.36 -13.25 16 14 H 0.08 2.18 8.05 -52.48 -0.42 1.76 16 15 C 0.04 1.17 5.52 -17.34 -0.10 1.07 16 16 N -0.80 -21.97 13.65 55.55 0.76 -21.22 16 17 Si 1.16 28.55 25.56 -169.99 -4.34 24.21 16 18 H -0.33 -8.13 7.11 56.52 0.40 -7.73 16 19 H -0.28 -6.84 6.67 56.52 0.38 -6.46 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 21 C -0.25 -5.71 9.22 -38.33 -0.35 -6.07 16 22 C -0.07 -1.14 9.44 -39.28 -0.37 -1.51 16 23 C -0.21 -2.92 9.02 -39.48 -0.36 -3.27 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 28 H 0.06 0.52 7.65 -51.93 -0.40 0.13 16 29 H 0.13 1.52 8.06 -52.48 -0.42 1.09 16 30 H 0.13 1.83 6.28 -52.49 -0.33 1.51 16 31 H 0.11 1.81 6.32 -52.49 -0.33 1.48 16 32 H 0.13 2.36 8.06 -52.48 -0.42 1.94 16 33 H 0.28 7.36 8.72 -40.82 -0.36 7.01 16 34 H 0.11 2.31 6.33 -52.49 -0.33 1.98 16 35 H 0.13 2.04 6.28 -52.49 -0.33 1.71 16 36 H 0.12 1.43 6.28 -52.49 -0.33 1.10 16 LS Contribution 302.34 15.07 4.56 4.56 Total: -1.00 -29.71 302.34 -7.76 -37.47 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -4.16 Total: -1.19 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -4.32 Total: -24.94 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.71 Total: -35.85 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.20 Total: -4.25 kcal Atomic # 14 Polarization: 28.55 SS G_CDS: -4.34 Total: 24.21 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.71 -7.76 -37.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239564324.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.559 kcal (2) G-P(sol) polarization free energy of solvation -29.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds