Wall clock time and date at job start Mon Mar 30 2020 00:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47415 * 2 1 4 4 C 1.35851 * 117.00422 * 179.97438 * 3 2 1 5 5 C 1.38851 * 119.93602 * 179.97438 * 4 3 2 6 6 C 1.37885 * 120.06439 * 179.97438 * 5 4 3 7 7 C 1.39403 * 119.93293 * 0.02562 * 6 5 4 8 8 C 1.48325 * 120.06524 * 179.97438 * 7 6 5 9 9 C 1.40067 * 120.82115 * 0.02562 * 8 7 6 10 10 C 1.38476 * 119.42006 * 179.97438 * 9 8 7 11 11 N 1.31493 * 121.15386 * 359.97438 * 10 9 8 12 12 C 1.33657 * 121.79455 * 359.97438 * 11 10 9 13 13 C 1.41426 * 119.77706 * 179.97438 * 12 11 10 14 14 H 1.08007 * 120.00398 * 187.07639 * 13 12 11 15 15 C 1.40028 * 120.00304 * 7.07138 * 13 12 11 16 16 N 1.30742 * 120.00582 * 182.55912 * 15 13 12 17 17 Si 1.86808 * 119.99789 * 2.56433 * 15 13 12 18 18 H 1.48499 * 109.47070 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.46833 * 299.99945 * 17 15 13 20 20 H 1.48501 * 109.46996 * 59.99803 * 17 15 13 21 21 C 1.39344 * 120.82572 * 180.23117 * 8 7 6 22 22 C 1.39403 * 119.87018 * 0.27444 * 7 6 5 23 23 C 1.37889 * 119.93216 * 359.42540 * 22 7 6 24 24 H 1.09002 * 109.46925 * 60.00010 * 1 2 3 25 25 H 1.08992 * 109.47190 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47373 * 300.00357 * 1 2 3 27 27 H 1.08996 * 109.46940 * 239.99795 * 2 1 3 28 28 H 1.09002 * 109.46925 * 119.99989 * 2 1 3 29 29 H 1.08006 * 119.96801 * 359.97438 * 5 4 3 30 30 H 1.07997 * 120.03006 * 180.02562 * 6 5 4 31 31 H 1.07999 * 120.29380 * 359.95359 * 9 8 7 32 32 H 1.08010 * 119.42561 * 179.97438 * 10 9 8 33 33 H 0.96999 * 119.99756 * 354.85168 * 16 15 13 34 34 H 1.07995 * 120.58693 * 0.04132 * 21 8 7 35 35 H 1.07999 * 120.02989 * 179.72939 * 22 7 6 36 36 H 1.08001 * 119.96255 * 180.30195 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3532 1.5252 0.0005 5 6 3.8824 2.8089 0.0000 6 6 5.2490 2.9927 0.0011 7 6 6.0994 1.8881 0.0022 8 6 7.5699 2.0823 0.0028 9 6 8.1238 3.3688 0.0028 10 6 9.5006 3.5166 0.0039 11 7 10.2971 2.4703 0.0054 12 6 9.8197 1.2219 0.0065 13 6 10.7154 0.1274 0.0075 14 1 10.3391 -0.8785 -0.1069 15 6 12.0901 0.3478 0.1568 16 7 12.9228 -0.6589 0.1076 17 14 12.7344 2.0805 0.4262 18 1 14.2135 2.0443 0.5539 19 1 12.3575 2.9339 -0.7291 20 1 12.1443 2.6404 1.6686 21 6 8.4345 0.9896 -0.0010 22 6 5.5651 0.6005 -0.0036 23 6 4.1977 0.4230 0.0015 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.2231 3.6643 -0.0012 30 1 5.6600 3.9914 0.0011 31 1 7.4827 4.2380 0.0017 32 1 9.9279 4.5086 0.0035 33 1 12.5843 -1.5656 0.0428 34 1 8.0464 -0.0182 -0.0051 35 1 6.2215 -0.2571 -0.0073 36 1 3.7832 -0.5743 0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239564324.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:50 Heat of formation + Delta-G solvation = -21.814120 kcal Electronic energy + Delta-G solvation = -18953.750863 eV Core-core repulsion = 15980.265599 eV Total energy + Delta-G solvation = -2973.485264 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.27671 -40.40444 -38.51570 -35.79301 -34.03909 -32.69641 -32.36071 -31.78614 -29.50841 -27.49520 -25.06528 -24.78424 -23.26133 -22.54442 -21.76793 -20.16719 -19.36678 -17.72579 -17.18201 -17.06352 -16.71725 -16.42973 -15.84480 -15.25067 -14.90854 -14.76181 -14.66692 -14.49057 -14.30698 -14.12947 -13.86429 -13.40531 -13.19816 -12.86861 -12.78579 -12.53877 -12.33659 -11.94193 -11.77447 -11.66085 -11.50928 -11.30362 -10.64181 -10.04029 -9.88587 -9.64610 -9.23791 -8.81402 -6.83110 -0.14295 0.34596 0.69422 1.14824 1.62594 1.74850 2.08352 2.21262 2.49650 2.60461 2.89483 3.61918 3.72410 3.76073 3.86457 3.98406 4.04279 4.13178 4.30351 4.31024 4.37505 4.49285 4.61153 4.62591 4.78402 4.87673 4.93724 4.98199 5.09524 5.17655 5.26549 5.31445 5.36678 5.40583 5.44570 5.67735 5.76853 5.94391 6.02928 6.36858 6.40872 6.65559 7.58790 7.96050 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.039442 B = 0.003804 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.736237 B = 7359.293583 C = 8037.647927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.042 3.958 3 O -0.326 6.326 4 C 0.126 3.874 5 C -0.156 4.156 6 C -0.062 4.062 7 C -0.099 4.099 8 C 0.028 3.972 9 C -0.283 4.283 10 C 0.133 3.867 11 N -0.598 5.598 12 C 0.238 3.762 13 C -0.515 4.515 14 H 0.062 0.938 15 C 0.014 3.986 16 N -0.834 5.834 17 Si 1.191 2.809 18 H -0.332 1.332 19 H -0.276 1.276 20 H -0.295 1.295 21 C -0.270 4.270 22 C -0.078 4.078 23 C -0.209 4.209 24 H 0.064 0.936 25 H 0.098 0.902 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.150 0.850 32 H 0.168 0.832 33 H 0.279 0.721 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.036 4.394 0.040 22.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 O -0.240 6.240 4 C 0.080 3.920 5 C -0.174 4.174 6 C -0.080 4.080 7 C -0.099 4.099 8 C 0.021 3.979 9 C -0.305 4.305 10 C -0.025 4.025 11 N -0.317 5.317 12 C 0.114 3.886 13 C -0.547 4.547 14 H 0.080 0.920 15 C -0.201 4.201 16 N -0.457 5.457 17 Si 1.024 2.976 18 H -0.266 1.266 19 H -0.204 1.204 20 H -0.223 1.223 21 C -0.292 4.292 22 C -0.096 4.096 23 C -0.227 4.227 24 H 0.084 0.916 25 H 0.117 0.883 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.171 0.829 30 H 0.170 0.830 31 H 0.168 0.832 32 H 0.185 0.815 33 H 0.090 0.910 34 H 0.126 0.874 35 H 0.139 0.861 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -19.969 5.315 0.177 20.665 hybrid contribution -1.826 -2.160 -0.229 2.837 sum -21.795 3.155 -0.052 22.023 Atomic orbital electron populations 1.21798 0.91115 1.04189 1.03353 1.23094 0.97150 0.80839 1.02210 1.86038 1.18353 1.31234 1.88358 1.19225 0.82670 0.94340 0.95773 1.20604 0.94886 0.95488 1.06410 1.21273 0.91927 0.99068 0.95724 1.18878 0.91335 0.94311 1.05388 1.19032 0.91751 0.93536 0.93531 1.21735 0.95585 0.96677 1.16508 1.22772 0.91026 0.97174 0.91546 1.66437 1.39165 0.99837 1.26302 1.18702 0.91647 0.90294 0.88000 1.20738 0.94193 0.93715 1.46067 0.91996 1.28588 0.93600 1.09647 0.88306 1.70678 1.39123 1.01580 1.34320 0.81320 0.69337 0.68363 0.78563 1.26632 1.20397 1.22334 1.21799 0.93250 0.98348 1.15762 1.21202 0.95066 0.96776 0.96572 1.21317 0.93211 0.99242 1.08928 0.91647 0.88293 0.91653 0.91318 0.91318 0.82890 0.82990 0.83229 0.81538 0.91041 0.87351 0.86056 0.83413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 71.98 0.74 -0.82 16 2 C 0.04 0.63 5.46 71.98 0.39 1.02 16 3 O -0.33 -7.12 10.13 -91.88 -0.93 -8.06 16 4 C 0.13 3.11 6.69 22.56 0.15 3.26 16 5 C -0.16 -3.74 9.97 22.33 0.22 -3.51 16 6 C -0.06 -1.67 9.44 22.47 0.21 -1.45 16 7 C -0.10 -3.30 5.88 -20.03 -0.12 -3.42 16 8 C 0.03 1.11 5.91 -19.88 -0.12 0.99 16 9 C -0.28 -10.46 9.51 22.77 0.22 -10.25 16 10 C 0.13 5.46 11.17 84.80 0.95 6.41 16 11 N -0.60 -30.03 4.54 -189.38 -0.86 -30.89 16 12 C 0.24 12.68 6.39 40.19 0.26 12.93 16 13 C -0.51 -29.59 9.58 23.49 0.23 -29.37 16 14 H 0.06 3.63 8.05 -2.91 -0.02 3.60 16 15 C 0.01 0.82 5.52 85.29 0.47 1.29 16 16 N -0.83 -47.85 13.65 21.84 0.30 -47.56 16 17 Si 1.19 59.14 25.56 68.60 1.75 60.90 16 18 H -0.33 -16.16 7.11 99.48 0.71 -15.45 16 19 H -0.28 -13.40 6.67 99.48 0.66 -12.73 16 20 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 21 C -0.27 -12.74 9.22 23.08 0.21 -12.52 16 22 C -0.08 -2.42 9.44 22.47 0.21 -2.21 16 23 C -0.21 -5.32 9.02 22.33 0.20 -5.12 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.95 7.66 -2.39 -0.02 0.94 16 28 H 0.07 0.95 7.65 -2.39 -0.02 0.94 16 29 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 30 H 0.15 3.40 6.28 -2.91 -0.02 3.38 16 31 H 0.15 4.23 6.32 -2.91 -0.02 4.21 16 32 H 0.17 5.44 8.06 -2.91 -0.02 5.42 16 33 H 0.28 15.51 8.72 -92.71 -0.81 14.70 16 34 H 0.11 4.91 6.33 -2.91 -0.02 4.89 16 35 H 0.12 3.87 6.28 -2.91 -0.02 3.85 16 36 H 0.15 2.97 6.28 -2.91 -0.02 2.95 16 Total: -1.00 -66.08 302.34 5.50 -60.58 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.01 Total: 7.78 kcal Atomic # 6 Polarization: -46.99 SS G_CDS: 4.23 Total: -42.76 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -0.56 Total: -78.45 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.93 Total: -8.06 kcal Atomic # 14 Polarization: 59.14 SS G_CDS: 1.75 Total: 60.90 kcal Total: -66.08 5.50 -60.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239564324.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.770 kcal (2) G-P(sol) polarization free energy of solvation -66.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds