Wall clock time and date at job start Mon Mar 30 2020 00:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42894 * 109.47129 * 2 1 4 4 C 1.35879 * 116.99966 * 179.97438 * 3 2 1 5 5 C 1.38827 * 119.93231 * 180.02562 * 4 3 2 6 6 C 1.37913 * 120.06089 * 179.97438 * 5 4 3 7 7 C 1.39376 * 119.93651 * 359.97438 * 6 5 4 8 8 C 1.48375 * 120.06385 * 180.02562 * 7 6 5 9 9 C 1.39729 * 120.41424 * 0.02562 * 8 7 6 10 10 N 1.31912 * 121.14536 * 179.97438 * 9 8 7 11 11 C 1.31524 * 122.12485 * 359.69930 * 10 9 8 12 12 C 1.40782 * 120.66507 * 0.59004 * 11 10 9 13 13 C 1.41440 * 120.60091 * 179.70041 * 12 11 10 14 14 H 1.07996 * 119.99840 * 23.20655 * 13 12 11 15 15 C 1.39931 * 120.00040 * 203.21103 * 13 12 11 16 16 N 1.30833 * 119.99958 * 17.53984 * 15 13 12 17 17 Si 1.86796 * 120.00029 * 197.54521 * 15 13 12 18 18 H 1.48497 * 109.46949 * 89.99872 * 17 15 13 19 19 H 1.48496 * 109.47042 * 209.99430 * 17 15 13 20 20 H 1.48496 * 109.47195 * 329.99771 * 17 15 13 21 21 C 1.39154 * 120.41177 * 179.97438 * 8 7 6 22 22 C 1.39367 * 119.86670 * 0.27402 * 7 6 5 23 23 C 1.37909 * 119.93952 * 359.46696 * 22 7 6 24 24 H 1.08997 * 109.46661 * 60.00161 * 1 2 3 25 25 H 1.09003 * 109.47091 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47123 * 300.00450 * 1 2 3 27 27 H 1.08997 * 109.47123 * 239.99550 * 2 1 3 28 28 H 1.09005 * 109.46431 * 119.99530 * 2 1 3 29 29 H 1.07994 * 119.97406 * 359.97438 * 5 4 3 30 30 H 1.08002 * 120.03463 * 180.02562 * 6 5 4 31 31 H 1.07992 * 119.42260 * 359.97438 * 9 8 7 32 32 H 1.08000 * 119.66707 * 180.29314 * 11 10 9 33 33 H 0.97003 * 120.00119 * 179.97438 * 16 15 13 34 34 H 1.08002 * 120.95166 * 0.02562 * 21 8 7 35 35 H 1.08007 * 120.03279 * 179.70487 * 22 7 6 36 36 H 1.07998 * 119.97267 * 180.25209 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3535 1.5252 0.0005 5 6 3.8826 2.8087 0.0011 6 6 5.2494 2.9925 0.0022 7 6 6.0997 1.8881 0.0033 8 6 7.5706 2.0826 0.0050 9 6 8.1140 3.3699 0.0061 10 7 9.4194 3.5594 0.0082 11 6 10.2716 2.5576 0.0151 12 6 9.8145 1.2261 0.0082 13 6 10.7322 0.1498 0.0093 14 1 11.7347 0.2953 0.3836 15 6 10.3411 -1.1036 -0.4746 16 7 9.2786 -1.2106 -1.2305 17 14 11.3360 -2.6241 -0.0412 18 1 10.8086 -3.2198 1.2126 19 1 11.2309 -3.6148 -1.1424 20 1 12.7592 -2.2463 0.1507 21 6 8.4262 0.9851 0.0066 22 6 5.5655 0.6009 -0.0026 23 6 4.1979 0.4233 0.0018 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.2233 3.6641 0.0007 30 1 5.6606 3.9912 0.0031 31 1 7.4537 4.2244 0.0053 32 1 11.3327 2.7585 0.0214 33 1 9.0077 -2.0794 -1.5663 34 1 8.0373 -0.0224 0.0062 35 1 6.2219 -0.2568 -0.0066 36 1 3.7833 -0.5740 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239564498.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:38 Heat of formation + Delta-G solvation = -0.364986 kcal Electronic energy + Delta-G solvation = -19133.584770 eV Core-core repulsion = 16161.029610 eV Total energy + Delta-G solvation = -2972.555160 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.91249 -38.51890 -36.99015 -34.14026 -32.41534 -31.16947 -30.83568 -30.20465 -27.56226 -25.72850 -24.01125 -22.94339 -22.01631 -20.81998 -20.18639 -18.15445 -17.38104 -16.07669 -15.82754 -15.69114 -15.36556 -14.92971 -14.33892 -13.78586 -13.37294 -13.37045 -13.27864 -12.85971 -12.65565 -12.56727 -12.01739 -11.84552 -11.72105 -11.51020 -11.31178 -11.25919 -11.10213 -10.74699 -10.65493 -10.34162 -9.86108 -9.43415 -8.79513 -8.65638 -8.14070 -7.87982 -7.07391 -6.86645 -4.55237 1.48048 1.72773 2.65924 2.96698 2.99416 3.02010 3.15063 3.29425 3.80446 4.21457 4.59973 4.80368 4.85124 5.08658 5.17324 5.21458 5.37951 5.45301 5.62915 5.63370 5.70303 5.75117 5.87348 5.95855 6.06112 6.31297 6.45732 6.59646 6.66589 6.73904 6.78321 6.99434 7.08128 7.14322 7.24013 7.62934 7.66256 7.79600 7.88006 8.36204 8.61190 8.64782 9.57785 9.99629 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.004813 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.801019 B = 5816.512640 C = 7173.774220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.321 6.321 4 C 0.108 3.892 5 C -0.151 4.151 6 C -0.081 4.081 7 C -0.044 4.044 8 C -0.087 4.087 9 C -0.027 4.027 10 N -0.469 5.469 11 C -0.019 4.019 12 C 0.062 3.938 13 C -0.450 4.450 14 H 0.084 0.916 15 C 0.075 3.925 16 N -0.791 5.791 17 Si 0.912 3.088 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.260 1.260 21 C -0.121 4.121 22 C -0.073 4.073 23 C -0.205 4.205 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.283 0.717 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.358 -2.011 1.660 12.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.236 6.236 4 C 0.064 3.936 5 C -0.170 4.170 6 C -0.099 4.099 7 C -0.045 4.045 8 C -0.089 4.089 9 C -0.185 4.185 10 N -0.176 5.176 11 C -0.180 4.180 12 C 0.058 3.942 13 C -0.479 4.479 14 H 0.102 0.898 15 C -0.144 4.144 16 N -0.415 5.415 17 Si 0.736 3.264 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.184 1.184 21 C -0.146 4.146 22 C -0.091 4.091 23 C -0.224 4.224 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.143 0.857 30 H 0.149 0.851 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.094 0.906 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.335 -1.198 1.507 12.484 hybrid contribution 0.153 -1.975 0.021 1.981 sum -12.182 -3.172 1.528 12.680 Atomic orbital electron populations 1.21765 0.93095 1.02594 1.03325 1.22710 0.95478 0.82539 1.01382 1.86004 1.19594 1.28740 1.89240 1.18962 0.81708 0.94256 0.98693 1.20257 0.95007 0.94391 1.07350 1.21073 0.91666 0.99040 0.98151 1.18907 0.93035 0.92553 1.00046 1.19415 0.90720 0.95399 1.03391 1.21778 0.91126 0.93939 1.11608 1.66933 1.03572 1.36775 1.10339 1.22538 0.97424 0.88544 1.09469 1.18472 0.92849 0.93310 0.89589 1.19576 0.99333 0.93279 1.35760 0.89776 1.25969 0.95139 1.00948 0.92317 1.69797 1.22544 1.26752 1.22450 0.86233 0.80972 0.80056 0.79108 1.19139 1.20179 1.18376 1.21823 0.92816 0.97607 1.02384 1.21186 0.93900 0.97546 0.96515 1.21106 0.94279 0.97549 1.09450 0.91651 0.90604 0.91661 0.92177 0.92216 0.85686 0.85108 0.86047 0.85592 0.90553 0.85020 0.85066 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.83 16 2 C 0.05 0.58 5.46 37.16 0.20 0.78 16 3 O -0.32 -4.57 10.13 -19.36 -0.20 -4.76 16 4 C 0.11 1.72 6.69 -39.14 -0.26 1.46 16 5 C -0.15 -2.39 9.97 -39.48 -0.39 -2.79 16 6 C -0.08 -1.41 9.43 -39.28 -0.37 -1.78 16 7 C -0.04 -0.89 5.88 -104.88 -0.62 -1.50 16 8 C -0.09 -2.02 5.88 -104.83 -0.62 -2.63 16 9 C -0.03 -0.62 10.60 -16.96 -0.18 -0.80 16 10 N -0.47 -11.63 10.32 -12.28 -0.13 -11.76 16 11 C -0.02 -0.47 10.96 -16.72 -0.18 -0.65 16 12 C 0.06 1.62 5.59 -106.71 -0.60 1.02 16 13 C -0.45 -11.37 9.08 -37.73 -0.34 -11.72 16 14 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 15 C 0.07 1.78 5.18 -17.34 -0.09 1.69 16 16 N -0.79 -19.31 10.92 55.55 0.61 -18.71 16 17 Si 0.91 17.72 29.59 -169.99 -5.03 12.69 16 18 H -0.27 -5.13 7.11 56.52 0.40 -4.72 16 19 H -0.28 -5.28 7.11 56.52 0.40 -4.87 16 20 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 21 C -0.12 -3.04 8.16 -38.23 -0.31 -3.35 16 22 C -0.07 -1.37 9.43 -39.28 -0.37 -1.74 16 23 C -0.21 -3.30 9.02 -39.48 -0.36 -3.66 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 28 H 0.06 0.60 7.65 -51.93 -0.40 0.20 16 29 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.13 2.05 6.21 -52.49 -0.33 1.73 16 31 H 0.12 2.45 6.19 -52.49 -0.33 2.13 16 32 H 0.13 2.92 8.06 -52.49 -0.42 2.50 16 33 H 0.28 6.27 8.30 -40.82 -0.34 5.94 16 34 H 0.13 3.30 4.43 -52.49 -0.23 3.07 16 35 H 0.13 2.52 6.26 -52.48 -0.33 2.20 16 36 H 0.12 1.65 6.28 -52.49 -0.33 1.32 16 LS Contribution 305.33 15.07 4.60 4.60 Total: -1.00 -27.99 305.33 -8.25 -36.24 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -4.00 Total: 8.20 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -4.11 Total: -26.51 kcal Atomic # 7 Polarization: -30.94 SS G_CDS: 0.48 Total: -30.46 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.20 Total: -4.76 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.99 -8.25 -36.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239564498.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.879 kcal (2) G-P(sol) polarization free energy of solvation -27.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds