Wall clock time and date at job start Mon Mar 30 2020 00:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42894 * 109.47129 * 2 1 4 4 C 1.35879 * 116.99966 * 179.97438 * 3 2 1 5 5 C 1.38827 * 119.93231 * 180.02562 * 4 3 2 6 6 C 1.37913 * 120.06089 * 179.97438 * 5 4 3 7 7 C 1.39376 * 119.93651 * 359.97438 * 6 5 4 8 8 C 1.48375 * 120.06385 * 180.02562 * 7 6 5 9 9 C 1.39729 * 120.41424 * 0.02562 * 8 7 6 10 10 N 1.31912 * 121.14536 * 179.97438 * 9 8 7 11 11 C 1.31524 * 122.12485 * 359.69930 * 10 9 8 12 12 C 1.40782 * 120.66507 * 0.59004 * 11 10 9 13 13 C 1.41440 * 120.60091 * 179.70041 * 12 11 10 14 14 H 1.07996 * 119.99840 * 23.20655 * 13 12 11 15 15 C 1.39931 * 120.00040 * 203.21103 * 13 12 11 16 16 N 1.30833 * 119.99958 * 17.53984 * 15 13 12 17 17 Si 1.86796 * 120.00029 * 197.54521 * 15 13 12 18 18 H 1.48497 * 109.46949 * 89.99872 * 17 15 13 19 19 H 1.48496 * 109.47042 * 209.99430 * 17 15 13 20 20 H 1.48496 * 109.47195 * 329.99771 * 17 15 13 21 21 C 1.39154 * 120.41177 * 179.97438 * 8 7 6 22 22 C 1.39367 * 119.86670 * 0.27402 * 7 6 5 23 23 C 1.37909 * 119.93952 * 359.46696 * 22 7 6 24 24 H 1.08997 * 109.46661 * 60.00161 * 1 2 3 25 25 H 1.09003 * 109.47091 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47123 * 300.00450 * 1 2 3 27 27 H 1.08997 * 109.47123 * 239.99550 * 2 1 3 28 28 H 1.09005 * 109.46431 * 119.99530 * 2 1 3 29 29 H 1.07994 * 119.97406 * 359.97438 * 5 4 3 30 30 H 1.08002 * 120.03463 * 180.02562 * 6 5 4 31 31 H 1.07992 * 119.42260 * 359.97438 * 9 8 7 32 32 H 1.08000 * 119.66707 * 180.29314 * 11 10 9 33 33 H 0.97003 * 120.00119 * 179.97438 * 16 15 13 34 34 H 1.08002 * 120.95166 * 0.02562 * 21 8 7 35 35 H 1.08007 * 120.03279 * 179.70487 * 22 7 6 36 36 H 1.07998 * 119.97267 * 180.25209 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3535 1.5252 0.0005 5 6 3.8826 2.8087 0.0011 6 6 5.2494 2.9925 0.0022 7 6 6.0997 1.8881 0.0033 8 6 7.5706 2.0826 0.0050 9 6 8.1140 3.3699 0.0061 10 7 9.4194 3.5594 0.0082 11 6 10.2716 2.5576 0.0151 12 6 9.8145 1.2261 0.0082 13 6 10.7322 0.1498 0.0093 14 1 11.7347 0.2953 0.3836 15 6 10.3411 -1.1036 -0.4746 16 7 9.2786 -1.2106 -1.2305 17 14 11.3360 -2.6241 -0.0412 18 1 10.8086 -3.2198 1.2126 19 1 11.2309 -3.6148 -1.1424 20 1 12.7592 -2.2463 0.1507 21 6 8.4262 0.9851 0.0066 22 6 5.5655 0.6009 -0.0026 23 6 4.1979 0.4233 0.0018 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.2233 3.6641 0.0007 30 1 5.6606 3.9912 0.0031 31 1 7.4537 4.2244 0.0053 32 1 11.3327 2.7585 0.0214 33 1 9.0077 -2.0794 -1.5663 34 1 8.0373 -0.0224 0.0062 35 1 6.2219 -0.2568 -0.0066 36 1 3.7833 -0.5740 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239564498.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:38 Heat of formation + Delta-G solvation = -14.543957 kcal Electronic energy + Delta-G solvation = -19134.199616 eV Core-core repulsion = 16161.029610 eV Total energy + Delta-G solvation = -2973.170006 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.19229 -40.18621 -38.35103 -35.98068 -33.73036 -32.42593 -32.36548 -31.74722 -29.05527 -27.57799 -25.09409 -24.52494 -23.49542 -22.29010 -21.73552 -19.42746 -19.09139 -17.59106 -17.22067 -17.02343 -16.89485 -16.43541 -15.95314 -15.19484 -14.85552 -14.62335 -14.55704 -14.20802 -14.14494 -13.70976 -13.38354 -13.34591 -13.15838 -12.95203 -12.88446 -12.72465 -12.50242 -12.20657 -11.76359 -11.72944 -11.54747 -11.20942 -10.39287 -10.02605 -9.97928 -9.74493 -8.76583 -8.53055 -6.47287 -0.03766 0.40018 0.92052 1.24133 1.38628 1.52009 1.52729 2.17414 2.25814 2.63190 2.94016 3.74424 3.81828 3.86237 3.93266 4.06553 4.17095 4.19372 4.36202 4.41737 4.43523 4.54217 4.69443 4.78718 4.91733 4.94782 4.95762 5.11248 5.15021 5.20797 5.23282 5.33842 5.43137 5.57205 5.77399 5.88408 5.90678 6.04867 6.44262 6.49403 6.73622 6.76094 7.67876 8.22323 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.004813 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.801019 B = 5816.512640 C = 7173.774220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.041 3.959 3 O -0.325 6.325 4 C 0.119 3.881 5 C -0.151 4.151 6 C -0.075 4.075 7 C -0.081 4.081 8 C -0.081 4.081 9 C -0.038 4.038 10 N -0.479 5.479 11 C -0.044 4.044 12 C 0.038 3.962 13 C -0.481 4.481 14 H 0.086 0.914 15 C 0.038 3.962 16 N -0.817 5.817 17 Si 0.987 3.013 18 H -0.261 1.261 19 H -0.267 1.267 20 H -0.256 1.256 21 C -0.147 4.147 22 C -0.083 4.083 23 C -0.204 4.204 24 H 0.064 0.936 25 H 0.099 0.901 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.153 0.847 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.135 0.865 33 H 0.293 0.707 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.440 -2.778 1.808 14.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 O -0.240 6.240 4 C 0.073 3.927 5 C -0.170 4.170 6 C -0.093 4.093 7 C -0.082 4.082 8 C -0.083 4.083 9 C -0.196 4.196 10 N -0.186 5.186 11 C -0.204 4.204 12 C 0.034 3.966 13 C -0.510 4.510 14 H 0.104 0.896 15 C -0.179 4.179 16 N -0.442 5.442 17 Si 0.807 3.193 18 H -0.186 1.186 19 H -0.191 1.191 20 H -0.180 1.180 21 C -0.173 4.173 22 C -0.101 4.101 23 C -0.222 4.222 24 H 0.083 0.917 25 H 0.117 0.883 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.171 0.829 30 H 0.163 0.837 31 H 0.169 0.831 32 H 0.152 0.848 33 H 0.103 0.897 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.430 -1.952 1.652 14.655 hybrid contribution 0.556 -1.725 -0.049 1.813 sum -13.874 -3.677 1.603 14.443 Atomic orbital electron populations 1.21793 0.90991 1.04181 1.03353 1.23083 0.97197 0.80955 1.02090 1.86028 1.18250 1.31104 1.88611 1.19120 0.82621 0.94186 0.96747 1.20550 0.94654 0.95498 1.06260 1.21211 0.92130 0.98819 0.97119 1.18881 0.91576 0.94128 1.03592 1.19715 0.92626 0.94818 1.01145 1.22298 0.91046 0.95092 1.11124 1.66944 1.04355 1.36747 1.10534 1.22695 0.98068 0.88626 1.11050 1.18810 0.93700 0.94022 0.90085 1.19854 0.99619 0.94448 1.37100 0.89584 1.26824 0.96165 1.03428 0.91466 1.69842 1.23680 1.28026 1.22633 0.85121 0.79292 0.75881 0.79017 1.18570 1.19131 1.17980 1.21870 0.92988 0.98065 1.04332 1.21138 0.95002 0.96690 0.97252 1.21277 0.93088 0.99139 1.08735 0.91672 0.88257 0.91589 0.91549 0.91409 0.82931 0.83652 0.83060 0.84793 0.89659 0.85719 0.86671 0.83572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 10.28 71.98 0.74 -1.16 16 2 C 0.04 0.76 5.46 71.98 0.39 1.15 16 3 O -0.33 -8.27 10.13 -92.19 -0.93 -9.21 16 4 C 0.12 3.47 6.69 22.55 0.15 3.62 16 5 C -0.15 -4.38 9.97 22.33 0.22 -4.16 16 6 C -0.08 -2.48 9.43 22.47 0.21 -2.27 16 7 C -0.08 -3.23 5.88 -20.03 -0.12 -3.35 16 8 C -0.08 -3.84 5.88 -20.00 -0.12 -3.96 16 9 C -0.04 -1.76 10.60 85.04 0.90 -0.86 16 10 N -0.48 -24.21 10.32 -192.75 -1.99 -26.20 16 11 C -0.04 -2.30 10.96 85.36 0.94 -1.37 16 12 C 0.04 2.07 5.59 -21.22 -0.12 1.95 16 13 C -0.48 -25.17 9.08 23.47 0.21 -24.96 16 14 H 0.09 4.29 7.90 -2.91 -0.02 4.26 16 15 C 0.04 1.81 5.18 85.25 0.44 2.25 16 16 N -0.82 -40.77 10.92 21.82 0.24 -40.54 16 17 Si 0.99 36.32 29.59 68.60 2.03 38.35 16 18 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 19 H -0.27 -9.32 7.11 99.48 0.71 -8.62 16 20 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 21 C -0.15 -7.69 8.16 23.14 0.19 -7.50 16 22 C -0.08 -3.10 9.43 22.46 0.21 -2.89 16 23 C -0.20 -6.24 9.02 22.33 0.20 -6.04 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 1.15 7.66 -2.39 -0.02 1.14 16 28 H 0.07 1.15 7.65 -2.38 -0.02 1.14 16 29 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 30 H 0.15 4.26 6.21 -2.91 -0.02 4.24 16 31 H 0.15 5.96 6.19 -2.91 -0.02 5.94 16 32 H 0.13 6.50 8.06 -2.91 -0.02 6.48 16 33 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 34 H 0.13 6.58 4.43 -2.91 -0.01 6.56 16 35 H 0.12 4.62 6.26 -2.91 -0.02 4.60 16 36 H 0.15 3.64 6.28 -2.91 -0.02 3.62 16 Total: -1.00 -61.46 305.33 4.90 -56.55 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 1.10 Total: 30.57 kcal Atomic # 6 Polarization: -53.99 SS G_CDS: 4.46 Total: -49.53 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: -1.75 Total: -66.73 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.93 Total: -9.21 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.35 kcal Total: -61.46 4.90 -56.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239564498.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.007 kcal (2) G-P(sol) polarization free energy of solvation -61.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds