Wall clock time and date at job start Mon Mar 30 2020 00:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47267 * 2 1 4 4 C 1.35793 * 117.00414 * 179.97438 * 3 2 1 5 5 C 1.38983 * 119.90794 * 179.97438 * 4 3 2 6 6 C 1.37750 * 120.09630 * 180.02562 * 5 4 3 7 7 C 1.39773 * 119.90056 * 0.02562 * 6 5 4 8 8 C 1.47734 * 120.09277 * 179.97438 * 7 6 5 9 9 C 1.39390 * 120.79318 * 309.98732 * 8 7 6 10 10 N 1.31641 * 120.64866 * 180.02562 * 9 8 7 11 11 C 1.32236 * 122.51629 * 359.97438 * 10 9 8 12 12 C 1.36444 * 121.52501 * 359.70759 * 11 10 9 13 13 C 1.41135 * 119.11171 * 0.56822 * 12 11 10 14 14 C 1.40877 * 121.11010 * 179.72409 * 13 12 11 15 15 H 1.08006 * 119.99993 * 152.98170 * 14 13 12 16 16 C 1.40152 * 119.99759 * 332.70447 * 14 13 12 17 17 N 1.30704 * 119.99465 * 161.19744 * 16 14 13 18 18 Si 1.86796 * 120.00069 * 341.20086 * 16 14 13 19 19 H 1.48496 * 109.47184 * 94.47004 * 18 16 14 20 20 H 1.48506 * 109.47016 * 214.46763 * 18 16 14 21 21 H 1.48500 * 109.47377 * 334.46623 * 18 16 14 22 22 C 1.39775 * 119.81779 * 0.25681 * 7 6 5 23 23 C 1.37749 * 119.90061 * 359.46623 * 22 7 6 24 24 H 1.08990 * 109.47244 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47444 * 300.00318 * 1 2 3 26 26 H 1.08999 * 109.47043 * 59.99672 * 1 2 3 27 27 H 1.08996 * 109.47305 * 240.00584 * 2 1 3 28 28 H 1.09000 * 109.47175 * 119.99792 * 2 1 3 29 29 H 1.08000 * 119.95480 * 359.97438 * 5 4 3 30 30 H 1.07997 * 120.04692 * 180.02562 * 6 5 4 31 31 H 1.08001 * 119.67592 * 0.03383 * 9 8 7 32 32 H 1.08000 * 119.23454 * 179.97438 * 11 10 9 33 33 H 1.08002 * 120.43990 * 180.29874 * 12 11 10 34 34 H 0.97006 * 119.99395 * 180.02562 * 17 16 14 35 35 H 1.07996 * 120.04963 * 179.74720 * 22 7 6 36 36 H 1.08000 * 119.95201 * 180.28001 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3526 1.5253 0.0005 5 6 3.8817 2.8105 0.0000 6 6 5.2467 2.9955 0.0000 7 6 6.0999 1.8884 0.0000 8 6 7.5645 2.0820 -0.0005 9 6 8.1708 2.9380 -0.9184 10 7 9.4762 3.1080 -0.9167 11 6 10.2724 2.4894 -0.0611 12 6 9.7801 1.6353 0.8822 13 6 8.3897 1.3994 0.9361 14 6 7.8368 0.5213 1.8890 15 1 6.8190 0.6587 2.2234 16 6 8.6055 -0.5340 2.3986 17 7 8.2580 -1.1149 3.5167 18 14 10.1265 -1.1100 1.4800 19 1 11.3249 -0.4262 2.0289 20 1 10.2765 -2.5785 1.6428 21 1 9.9873 -0.7835 0.0380 22 6 5.5636 0.5977 -0.0054 23 6 4.1974 0.4217 0.0003 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.2217 3.6654 -0.0012 30 1 5.6569 3.9945 0.0001 31 1 7.5637 3.4672 -1.6379 32 1 11.3366 2.6677 -0.1073 33 1 10.4460 1.1430 1.5755 34 1 8.7903 -1.8451 3.8696 35 1 6.2194 -0.2604 -0.0096 36 1 3.7822 -0.5753 0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239565882.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:56 Heat of formation + Delta-G solvation = 1.578036 kcal Electronic energy + Delta-G solvation = -19541.505681 eV Core-core repulsion = 16569.034777 eV Total energy + Delta-G solvation = -2972.470904 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.73094 -38.69089 -36.84987 -34.19048 -32.27487 -31.40547 -30.82953 -30.29420 -27.75688 -25.92323 -23.92175 -22.53521 -22.05365 -21.01116 -20.14695 -17.97608 -17.73678 -16.13965 -15.93125 -15.61363 -15.20226 -14.64590 -14.31367 -13.96076 -13.55028 -13.24163 -13.13114 -12.97800 -12.86140 -12.62227 -12.42355 -11.73589 -11.67068 -11.57078 -11.42710 -11.01984 -10.89514 -10.70141 -10.46119 -10.28772 -9.84232 -9.47779 -8.51788 -8.40607 -8.15232 -8.06832 -7.20998 -7.17572 -4.77570 1.75928 1.95910 2.56278 2.56929 2.98524 3.08872 3.18812 3.45962 3.79611 4.36611 4.44536 4.92367 4.98614 5.23095 5.28610 5.34662 5.47239 5.51096 5.52835 5.74429 5.74715 5.87631 5.97434 5.99946 6.08742 6.23812 6.41281 6.49397 6.62577 6.78023 6.86791 6.89862 7.06959 7.13328 7.27084 7.38469 7.60130 7.84687 7.87918 8.12571 8.38934 8.54236 9.34463 9.79670 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019710 B = 0.005871 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.240190 B = 4768.265066 C = 5876.498050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.323 6.323 4 C 0.103 3.897 5 C -0.154 4.154 6 C -0.089 4.089 7 C -0.019 4.019 8 C -0.215 4.215 9 C 0.135 3.865 10 N -0.580 5.580 11 C 0.114 3.886 12 C -0.287 4.287 13 C 0.121 3.879 14 C -0.423 4.423 15 H 0.100 0.900 16 C 0.086 3.914 17 N -0.785 5.785 18 Si 0.914 3.086 19 H -0.266 1.266 20 H -0.288 1.288 21 H -0.245 1.245 22 C -0.056 4.056 23 C -0.208 4.208 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.290 0.710 35 H 0.129 0.871 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.385 -0.724 -4.401 9.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.238 6.238 4 C 0.059 3.941 5 C -0.173 4.173 6 C -0.107 4.107 7 C -0.020 4.020 8 C -0.220 4.220 9 C -0.020 4.020 10 N -0.295 5.295 11 C -0.036 4.036 12 C -0.309 4.309 13 C 0.113 3.887 14 C -0.452 4.452 15 H 0.118 0.882 16 C -0.137 4.137 17 N -0.408 5.408 18 Si 0.740 3.260 19 H -0.192 1.192 20 H -0.216 1.216 21 H -0.168 1.168 22 C -0.074 4.074 23 C -0.226 4.226 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.125 0.875 34 H 0.101 0.899 35 H 0.147 0.853 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.156 -0.205 -4.782 9.456 hybrid contribution 0.416 -1.275 0.632 1.482 sum -7.740 -1.480 -4.150 8.906 Atomic orbital electron populations 1.21757 0.93264 1.02490 1.03228 1.22682 0.95309 0.82693 1.01363 1.85963 1.19833 1.28576 1.89398 1.18979 0.81540 0.94249 0.99332 1.20168 0.94986 0.94162 1.07959 1.21080 0.91703 0.98570 0.99363 1.18557 0.92299 0.92146 0.98962 1.19456 0.91741 1.08657 1.02131 1.22236 0.90804 0.93680 0.95327 1.67395 1.05162 1.29054 1.27865 1.21646 0.98024 0.92803 0.91088 1.21623 0.96353 1.07648 1.05268 1.17826 0.90687 0.90632 0.89586 1.19532 1.01521 1.08139 1.15967 0.88207 1.26298 0.98481 0.95647 0.93285 1.69643 1.37575 1.18463 1.15094 0.86283 0.80462 0.76532 0.82741 1.19224 1.21570 1.16773 1.21180 0.93438 0.97593 0.95213 1.21098 0.94473 0.97310 1.09750 0.90696 0.91684 0.91768 0.92338 0.92165 0.86127 0.85913 0.85528 0.85971 0.87452 0.89936 0.85312 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 37.16 0.38 -0.99 16 2 C 0.05 0.66 5.46 37.16 0.20 0.86 16 3 O -0.32 -5.03 10.13 -19.09 -0.19 -5.22 16 4 C 0.10 1.78 6.70 -39.03 -0.26 1.52 16 5 C -0.15 -2.62 9.97 -39.48 -0.39 -3.02 16 6 C -0.09 -1.62 9.54 -39.19 -0.37 -1.99 16 7 C -0.02 -0.38 4.99 -104.87 -0.52 -0.91 16 8 C -0.21 -4.87 5.53 -104.04 -0.58 -5.44 16 9 C 0.13 2.93 10.71 -17.20 -0.18 2.74 16 10 N -0.58 -13.15 10.32 -13.35 -0.14 -13.29 16 11 C 0.11 2.54 11.08 -18.02 -0.20 2.34 16 12 C -0.29 -6.73 7.25 -39.13 -0.28 -7.01 16 13 C 0.12 2.94 5.18 -106.25 -0.55 2.39 16 14 C -0.42 -10.69 7.79 -37.87 -0.29 -10.98 16 15 H 0.10 2.69 6.95 -52.48 -0.36 2.33 16 16 C 0.09 2.09 5.43 -17.31 -0.09 2.00 16 17 N -0.79 -19.51 13.92 55.56 0.77 -18.74 16 18 Si 0.91 19.62 24.50 -169.99 -4.17 15.46 16 19 H -0.27 -5.55 6.64 56.52 0.38 -5.18 16 20 H -0.29 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.24 -5.47 6.86 56.52 0.39 -5.08 16 22 C -0.06 -1.12 8.11 -39.19 -0.32 -1.43 16 23 C -0.21 -3.66 9.02 -39.48 -0.36 -4.01 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.65 7.65 -51.93 -0.40 0.26 16 28 H 0.06 0.72 7.65 -51.93 -0.40 0.32 16 29 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 30 H 0.12 2.04 8.05 -52.49 -0.42 1.62 16 31 H 0.13 2.40 8.05 -52.49 -0.42 1.98 16 32 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 33 H 0.11 2.46 4.52 -52.49 -0.24 2.22 16 34 H 0.29 6.49 8.29 -40.82 -0.34 6.15 16 35 H 0.13 2.67 7.38 -52.49 -0.39 2.28 16 36 H 0.12 1.81 6.28 -52.49 -0.33 1.48 16 LS Contribution 301.88 15.07 4.55 4.55 Total: -1.00 -27.42 301.88 -7.24 -34.66 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -4.25 Total: 6.52 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -3.82 Total: -23.94 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.64 Total: -32.03 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.19 Total: -5.22 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.17 Total: 15.46 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.42 -7.24 -34.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239565882.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.241 kcal (2) G-P(sol) polarization free energy of solvation -27.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds