Wall clock time and date at job start Mon Mar 30 2020 00:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47267 * 2 1 4 4 C 1.35793 * 117.00414 * 179.97438 * 3 2 1 5 5 C 1.38983 * 119.90794 * 179.97438 * 4 3 2 6 6 C 1.37750 * 120.09630 * 180.02562 * 5 4 3 7 7 C 1.39773 * 119.90056 * 0.02562 * 6 5 4 8 8 C 1.47734 * 120.09277 * 179.97438 * 7 6 5 9 9 C 1.39390 * 120.79318 * 309.98732 * 8 7 6 10 10 N 1.31641 * 120.64866 * 180.02562 * 9 8 7 11 11 C 1.32236 * 122.51629 * 359.97438 * 10 9 8 12 12 C 1.36444 * 121.52501 * 359.70759 * 11 10 9 13 13 C 1.41135 * 119.11171 * 0.56822 * 12 11 10 14 14 C 1.40877 * 121.11010 * 179.72409 * 13 12 11 15 15 H 1.08006 * 119.99993 * 152.98170 * 14 13 12 16 16 C 1.40152 * 119.99759 * 332.70447 * 14 13 12 17 17 N 1.30704 * 119.99465 * 161.19744 * 16 14 13 18 18 Si 1.86796 * 120.00069 * 341.20086 * 16 14 13 19 19 H 1.48496 * 109.47184 * 94.47004 * 18 16 14 20 20 H 1.48506 * 109.47016 * 214.46763 * 18 16 14 21 21 H 1.48500 * 109.47377 * 334.46623 * 18 16 14 22 22 C 1.39775 * 119.81779 * 0.25681 * 7 6 5 23 23 C 1.37749 * 119.90061 * 359.46623 * 22 7 6 24 24 H 1.08990 * 109.47244 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47444 * 300.00318 * 1 2 3 26 26 H 1.08999 * 109.47043 * 59.99672 * 1 2 3 27 27 H 1.08996 * 109.47305 * 240.00584 * 2 1 3 28 28 H 1.09000 * 109.47175 * 119.99792 * 2 1 3 29 29 H 1.08000 * 119.95480 * 359.97438 * 5 4 3 30 30 H 1.07997 * 120.04692 * 180.02562 * 6 5 4 31 31 H 1.08001 * 119.67592 * 0.03383 * 9 8 7 32 32 H 1.08000 * 119.23454 * 179.97438 * 11 10 9 33 33 H 1.08002 * 120.43990 * 180.29874 * 12 11 10 34 34 H 0.97006 * 119.99395 * 180.02562 * 17 16 14 35 35 H 1.07996 * 120.04963 * 179.74720 * 22 7 6 36 36 H 1.08000 * 119.95201 * 180.28001 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3526 1.5253 0.0005 5 6 3.8817 2.8105 0.0000 6 6 5.2467 2.9955 0.0000 7 6 6.0999 1.8884 0.0000 8 6 7.5645 2.0820 -0.0005 9 6 8.1708 2.9380 -0.9184 10 7 9.4762 3.1080 -0.9167 11 6 10.2724 2.4894 -0.0611 12 6 9.7801 1.6353 0.8822 13 6 8.3897 1.3994 0.9361 14 6 7.8368 0.5213 1.8890 15 1 6.8190 0.6587 2.2234 16 6 8.6055 -0.5340 2.3986 17 7 8.2580 -1.1149 3.5167 18 14 10.1265 -1.1100 1.4800 19 1 11.3249 -0.4262 2.0289 20 1 10.2765 -2.5785 1.6428 21 1 9.9873 -0.7835 0.0380 22 6 5.5636 0.5977 -0.0054 23 6 4.1974 0.4217 0.0003 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.2217 3.6654 -0.0012 30 1 5.6569 3.9945 0.0001 31 1 7.5637 3.4672 -1.6379 32 1 11.3366 2.6677 -0.1073 33 1 10.4460 1.1430 1.5755 34 1 8.7903 -1.8451 3.8696 35 1 6.2194 -0.2604 -0.0096 36 1 3.7822 -0.5753 0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239565882.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:56 Heat of formation + Delta-G solvation = -13.199976 kcal Electronic energy + Delta-G solvation = -19542.146504 eV Core-core repulsion = 16569.034777 eV Total energy + Delta-G solvation = -2973.111727 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.12352 -40.31584 -38.24269 -36.01059 -33.73589 -32.89158 -32.27804 -31.67451 -29.31585 -27.70771 -25.09335 -24.07595 -23.65746 -22.43919 -21.68263 -19.69249 -19.13306 -17.84748 -17.15012 -16.98459 -16.71491 -16.27260 -16.07553 -15.44799 -15.09399 -14.75899 -14.52044 -14.37680 -14.19699 -14.10090 -13.46062 -13.42249 -13.11671 -12.84499 -12.78590 -12.60177 -12.53658 -12.34887 -11.73334 -11.59104 -11.57501 -11.22679 -10.23413 -9.93505 -9.86334 -9.77637 -9.03442 -8.71000 -6.65482 0.19990 0.51857 0.75716 0.92932 1.23829 1.38769 1.44969 2.04928 2.32078 2.60527 2.90448 3.51786 3.88538 3.95120 4.00062 4.06720 4.17694 4.22801 4.33276 4.38371 4.53381 4.55605 4.62142 4.71506 4.78791 4.94689 4.95975 5.08880 5.16753 5.18578 5.22058 5.36327 5.42929 5.53028 5.67914 5.89272 5.92535 6.08901 6.24718 6.52210 6.58003 6.66132 7.57380 8.01890 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019710 B = 0.005871 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.240190 B = 4768.265066 C = 5876.498050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.043 3.957 3 O -0.328 6.328 4 C 0.108 3.892 5 C -0.154 4.154 6 C -0.085 4.085 7 C -0.049 4.049 8 C -0.216 4.216 9 C 0.129 3.871 10 N -0.584 5.584 11 C 0.111 3.889 12 C -0.301 4.301 13 C 0.103 3.897 14 C -0.444 4.444 15 H 0.069 0.931 16 C 0.057 3.943 17 N -0.820 5.820 18 Si 0.962 3.038 19 H -0.253 1.253 20 H -0.274 1.274 21 H -0.260 1.260 22 C -0.070 4.070 23 C -0.210 4.210 24 H 0.099 0.901 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.147 0.853 30 H 0.139 0.861 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.111 0.889 34 H 0.300 0.700 35 H 0.109 0.891 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.984 -0.271 -5.458 10.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 O -0.243 6.243 4 C 0.063 3.937 5 C -0.173 4.173 6 C -0.103 4.103 7 C -0.050 4.050 8 C -0.221 4.221 9 C -0.025 4.025 10 N -0.298 5.298 11 C -0.039 4.039 12 C -0.324 4.324 13 C 0.095 3.905 14 C -0.474 4.474 15 H 0.087 0.913 16 C -0.163 4.163 17 N -0.444 5.444 18 Si 0.786 3.214 19 H -0.178 1.178 20 H -0.200 1.200 21 H -0.185 1.185 22 C -0.089 4.089 23 C -0.229 4.229 24 H 0.117 0.883 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.165 0.835 30 H 0.157 0.843 31 H 0.172 0.828 32 H 0.173 0.827 33 H 0.129 0.871 34 H 0.111 0.889 35 H 0.127 0.873 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.775 0.246 -5.832 10.539 hybrid contribution 0.431 -1.350 0.890 1.673 sum -8.344 -1.104 -4.941 9.760 Atomic orbital electron populations 1.21782 0.90861 1.04162 1.03361 1.23038 0.97242 0.81127 1.01796 1.85980 1.18510 1.30869 1.88899 1.19126 0.82433 0.94200 0.97908 1.20469 0.94847 0.95102 1.06859 1.21224 0.92070 0.98509 0.98536 1.18618 0.91726 0.93204 1.01422 1.19767 0.92970 1.07902 1.01454 1.22660 0.90868 0.93559 0.95442 1.67487 1.05596 1.28926 1.27788 1.22127 0.99630 0.91891 0.90277 1.21763 0.96022 1.08461 1.06117 1.18080 0.91733 0.90849 0.89815 1.19374 1.00520 1.09844 1.17620 0.91297 1.26852 1.00489 0.95296 0.93639 1.69651 1.39095 1.19564 1.16116 0.85543 0.78261 0.77006 0.80586 1.17798 1.20043 1.18451 1.21096 0.94338 0.96953 0.96479 1.21251 0.93588 0.98726 1.09304 0.88267 0.91803 0.91369 0.91408 0.92242 0.83491 0.84340 0.82773 0.82703 0.87126 0.88947 0.87275 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 10.28 71.98 0.74 -1.54 16 2 C 0.04 0.94 5.46 71.98 0.39 1.33 16 3 O -0.33 -9.57 10.13 -91.23 -0.92 -10.49 16 4 C 0.11 3.59 6.70 22.63 0.15 3.75 16 5 C -0.15 -4.98 9.97 22.33 0.22 -4.76 16 6 C -0.09 -3.02 9.54 22.53 0.21 -2.81 16 7 C -0.05 -2.03 4.99 -20.02 -0.10 -2.13 16 8 C -0.22 -9.85 5.53 -19.49 -0.11 -9.96 16 9 C 0.13 5.46 10.71 85.00 0.91 6.37 16 10 N -0.58 -25.46 10.32 -196.16 -2.02 -27.49 16 11 C 0.11 4.76 11.08 84.21 0.93 5.70 16 12 C -0.30 -14.02 7.25 22.56 0.16 -13.86 16 13 C 0.10 5.12 5.18 -20.92 -0.11 5.01 16 14 C -0.44 -23.35 7.79 23.38 0.18 -23.17 16 15 H 0.07 3.95 6.95 -2.91 -0.02 3.93 16 16 C 0.06 2.84 5.43 85.33 0.46 3.30 16 17 N -0.82 -41.80 13.92 21.86 0.30 -41.50 16 18 Si 0.96 40.47 24.50 68.60 1.68 42.15 16 19 H -0.25 -10.00 6.64 99.48 0.66 -9.34 16 20 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.26 -11.52 6.86 99.48 0.68 -10.84 16 22 C -0.07 -2.88 8.11 22.53 0.18 -2.69 16 23 C -0.21 -7.35 9.02 22.33 0.20 -7.15 16 24 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 1.38 7.65 -2.39 -0.02 1.36 16 28 H 0.06 1.33 7.65 -2.39 -0.02 1.31 16 29 H 0.15 3.93 8.06 -2.91 -0.02 3.90 16 30 H 0.14 4.36 8.05 -2.91 -0.02 4.34 16 31 H 0.16 5.53 8.05 -2.91 -0.02 5.51 16 32 H 0.16 5.48 8.06 -2.91 -0.02 5.45 16 33 H 0.11 4.99 4.52 -2.91 -0.01 4.97 16 34 H 0.30 13.61 8.29 -92.70 -0.77 12.84 16 35 H 0.11 4.79 7.38 -2.91 -0.02 4.77 16 36 H 0.14 4.14 6.28 -2.91 -0.02 4.12 16 Total: -1.00 -59.04 301.88 4.50 -54.54 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 1.02 Total: 25.39 kcal Atomic # 6 Polarization: -47.05 SS G_CDS: 4.44 Total: -42.60 kcal Atomic # 7 Polarization: -67.26 SS G_CDS: -1.72 Total: -68.98 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.92 Total: -10.49 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 1.68 Total: 42.15 kcal Total: -59.04 4.50 -54.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239565882.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.338 kcal (2) G-P(sol) polarization free energy of solvation -59.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds