Wall clock time and date at job start Mon Mar 30 2020 00:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35653 * 116.99952 * 2 1 4 4 C 1.39014 * 119.55457 * 179.97438 * 3 2 1 5 5 C 1.38137 * 119.24008 * 180.02562 * 4 3 2 6 6 C 1.39926 * 118.38129 * 359.97438 * 5 4 3 7 7 C 1.48369 * 120.47393 * 179.97438 * 6 5 4 8 8 C 1.39363 * 120.12647 * 359.97329 * 7 6 5 9 9 C 1.37992 * 119.87980 * 180.02562 * 8 7 6 10 10 C 1.38344 * 120.11949 * 359.97438 * 9 8 7 11 11 C 1.38302 * 120.24917 * 0.04124 * 10 9 8 12 12 C 1.50694 * 119.94097 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47528 * 269.95640 * 12 11 10 14 14 H 1.07999 * 119.99591 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00274 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00230 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00151 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47058 * 60.00243 * 17 15 13 19 19 H 1.48493 * 109.47459 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46994 * 300.00478 * 17 15 13 21 21 C 1.38038 * 120.11688 * 359.95810 * 11 10 9 22 22 C 1.39185 * 119.04693 * 0.25186 * 6 5 4 23 23 N 1.31817 * 120.66307 * 359.48112 * 22 6 5 24 24 H 1.09004 * 109.46800 * 300.00365 * 1 2 3 25 25 H 1.09007 * 109.46958 * 59.99762 * 1 2 3 26 26 H 1.08996 * 109.47530 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.37585 * 0.04301 * 4 3 2 28 28 H 1.07999 * 120.81232 * 180.02562 * 5 4 3 29 29 H 1.08001 * 120.06003 * 0.02562 * 8 7 6 30 30 H 1.08001 * 119.93911 * 180.02562 * 9 8 7 31 31 H 1.08005 * 119.87752 * 180.02562 * 10 9 8 32 32 H 1.09008 * 109.47277 * 29.95592 * 12 11 10 33 33 H 1.09003 * 109.47325 * 149.95465 * 12 11 10 34 34 H 0.97000 * 120.00547 * 179.97438 * 16 15 13 35 35 H 1.08005 * 120.05648 * 180.29928 * 21 11 10 36 36 H 1.07992 * 119.66288 * 179.74569 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4337 1.2707 0.0005 5 6 4.0540 2.5049 0.0011 6 6 3.2528 3.6520 0.0005 7 6 3.8702 5.0011 0.0016 8 6 5.2573 5.1355 0.0038 9 6 5.8262 6.3927 0.0054 10 6 5.0222 7.5185 0.0042 11 6 3.6450 7.3911 0.0024 12 6 2.7758 8.6221 0.0017 13 6 2.4833 9.0314 1.4223 14 1 2.8868 8.4576 2.2435 15 6 1.7013 10.1387 1.6736 16 7 1.2103 10.8377 0.6736 17 14 1.3393 10.6464 3.4345 18 1 2.6142 10.9406 4.1369 19 1 0.4827 11.8593 3.4339 20 1 0.6329 9.5424 4.1326 21 6 3.0653 6.1384 0.0008 22 6 1.8683 3.5093 0.0048 23 7 1.3158 2.3125 -0.0010 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 4.0208 0.3642 0.0003 28 1 5.1312 2.5826 0.0011 29 1 5.8860 4.2573 0.0043 30 1 6.9011 6.4980 0.0066 31 1 5.4715 8.5006 0.0050 32 1 3.2942 9.4328 -0.5105 33 1 1.8402 8.4060 -0.5141 34 1 0.6599 11.6166 0.8504 35 1 1.9898 6.0400 -0.0055 36 1 1.2404 4.3879 0.0085 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239726837.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:15 Heat of formation + Delta-G solvation = 11.332415 kcal Electronic energy + Delta-G solvation = -18882.393642 eV Core-core repulsion = 15910.345719 eV Total energy + Delta-G solvation = -2972.047923 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.67172 -38.89777 -37.63444 -33.78041 -32.73848 -31.98425 -31.14210 -28.87680 -27.13831 -27.10748 -24.03688 -23.58932 -22.73215 -21.25683 -19.89850 -18.52232 -16.94832 -16.49544 -16.21543 -16.06935 -15.50041 -14.60688 -14.56021 -14.32950 -14.00259 -13.61590 -13.50302 -13.35336 -12.63948 -12.39463 -12.29400 -11.91247 -11.85446 -11.34327 -11.28007 -11.04926 -10.84789 -10.53848 -10.41524 -10.04327 -9.64259 -9.56231 -9.48504 -9.04819 -8.45165 -8.02172 -7.56136 -6.07409 -4.11636 0.81931 1.18968 2.02259 2.23632 3.01596 3.30449 3.34760 3.37929 3.78255 4.28881 4.37136 4.54952 4.75924 4.88431 4.94297 5.07376 5.19277 5.20071 5.27316 5.40181 5.45270 5.52967 5.64138 5.79979 5.92862 5.99682 6.03029 6.30066 6.38373 6.53178 6.65920 6.98001 7.06263 7.10723 7.17663 7.44936 7.62265 7.77513 7.83888 7.88180 8.27464 8.93405 9.52616 11.02450 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019686 B = 0.004233 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.003108 B = 6612.773344 C = 7598.500404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.312 6.312 3 C 0.306 3.694 4 C -0.187 4.187 5 C -0.040 4.040 6 C -0.112 4.112 7 C -0.051 4.051 8 C -0.138 4.138 9 C -0.120 4.120 10 C -0.118 4.118 11 C -0.030 4.030 12 C 0.047 3.953 13 C -0.514 4.514 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.111 4.111 22 C 0.147 3.853 23 N -0.535 5.535 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.093 0.907 27 H 0.140 0.860 28 H 0.143 0.857 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.263 0.737 35 H 0.121 0.879 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.230 -17.661 -2.489 18.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.219 6.219 3 C 0.127 3.873 4 C -0.208 4.208 5 C -0.065 4.065 6 C -0.115 4.115 7 C -0.051 4.051 8 C -0.156 4.156 9 C -0.138 4.138 10 C -0.136 4.136 11 C -0.030 4.030 12 C 0.010 3.990 13 C -0.552 4.552 14 H 0.075 0.925 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.723 3.277 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.129 4.129 22 C -0.009 4.009 23 N -0.258 5.258 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.111 0.889 27 H 0.158 0.842 28 H 0.161 0.839 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.137 0.863 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.139 0.861 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.297 -17.873 -2.536 18.350 hybrid contribution 0.396 0.561 1.017 1.227 sum 3.693 -17.311 -1.519 17.766 Atomic orbital electron populations 1.22836 0.77368 1.02652 1.02625 1.86198 1.22837 1.24799 1.88081 1.19889 0.89422 0.84717 0.93237 1.20941 0.91888 0.99302 1.08651 1.21481 1.00561 0.90494 0.94012 1.19727 0.94184 0.93594 1.03974 1.18447 0.93270 0.90594 1.02819 1.20869 0.93493 0.97102 1.04150 1.20964 0.99161 0.92549 1.01165 1.21205 0.93699 0.98299 1.00405 1.20635 0.94340 0.96362 0.91653 1.18374 0.93771 0.89013 0.97819 1.21009 1.31440 1.11387 0.91399 0.92487 1.24996 0.95688 0.96270 0.97235 1.69939 1.34307 1.18209 1.30774 0.86602 0.78375 0.77984 0.84777 1.20146 1.21199 1.20137 1.21119 0.99423 0.91322 1.01054 1.22685 0.92353 0.93548 0.92335 1.67292 1.40745 0.98729 1.18993 0.92271 0.92287 0.88856 0.84223 0.83930 0.86933 0.86753 0.86255 0.95192 0.95225 0.92731 0.86114 0.81641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.38 101.05 1.05 1.44 16 2 O -0.31 -3.89 10.47 -18.66 -0.20 -4.08 16 3 C 0.31 4.19 7.49 -17.07 -0.13 4.06 16 4 C -0.19 -2.24 10.03 -39.33 -0.39 -2.63 16 5 C -0.04 -0.49 9.53 -38.99 -0.37 -0.87 16 6 C -0.11 -1.64 5.89 -104.74 -0.62 -2.26 16 7 C -0.05 -0.83 5.88 -104.90 -0.62 -1.44 16 8 C -0.14 -2.06 9.44 -39.25 -0.37 -2.43 16 9 C -0.12 -1.88 10.03 -39.63 -0.40 -2.28 16 10 C -0.12 -2.20 9.69 -39.52 -0.38 -2.58 16 11 C -0.03 -0.63 5.06 -104.67 -0.53 -1.16 16 12 C 0.05 1.18 5.10 -29.04 -0.15 1.03 16 13 C -0.51 -14.13 9.09 -34.44 -0.31 -14.44 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 17 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.11 -2.09 9.09 -39.25 -0.36 -2.45 16 22 C 0.15 2.18 10.59 -17.21 -0.18 2.00 16 23 N -0.54 -7.93 9.19 -13.05 -0.12 -8.05 16 24 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 25 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 28 H 0.14 1.38 6.32 -52.49 -0.33 1.04 16 29 H 0.11 1.33 6.27 -52.49 -0.33 1.00 16 30 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.12 2.16 8.06 -52.48 -0.42 1.74 16 32 H 0.03 0.78 8.08 -51.92 -0.42 0.36 16 33 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.12 2.18 6.23 -52.48 -0.33 1.86 16 36 H 0.17 2.35 6.22 -52.49 -0.33 2.02 16 LS Contribution 312.32 15.07 4.71 4.71 Total: -1.00 -30.48 312.32 -7.98 -38.46 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -4.23 Total: 0.39 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -3.86 Total: -22.44 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.62 Total: -33.33 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.20 Total: -4.08 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.48 -7.98 -38.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239726837.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.792 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds