Wall clock time and date at job start Mon Mar 30 2020 00:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35653 * 116.99952 * 2 1 4 4 C 1.39014 * 119.55457 * 179.97438 * 3 2 1 5 5 C 1.38137 * 119.24008 * 180.02562 * 4 3 2 6 6 C 1.39926 * 118.38129 * 359.97438 * 5 4 3 7 7 C 1.48369 * 120.47393 * 179.97438 * 6 5 4 8 8 C 1.39363 * 120.12647 * 359.97329 * 7 6 5 9 9 C 1.37992 * 119.87980 * 180.02562 * 8 7 6 10 10 C 1.38344 * 120.11949 * 359.97438 * 9 8 7 11 11 C 1.38302 * 120.24917 * 0.04124 * 10 9 8 12 12 C 1.50694 * 119.94097 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47528 * 269.95640 * 12 11 10 14 14 H 1.07999 * 119.99591 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00274 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00230 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00151 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47058 * 60.00243 * 17 15 13 19 19 H 1.48493 * 109.47459 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46994 * 300.00478 * 17 15 13 21 21 C 1.38038 * 120.11688 * 359.95810 * 11 10 9 22 22 C 1.39185 * 119.04693 * 0.25186 * 6 5 4 23 23 N 1.31817 * 120.66307 * 359.48112 * 22 6 5 24 24 H 1.09004 * 109.46800 * 300.00365 * 1 2 3 25 25 H 1.09007 * 109.46958 * 59.99762 * 1 2 3 26 26 H 1.08996 * 109.47530 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.37585 * 0.04301 * 4 3 2 28 28 H 1.07999 * 120.81232 * 180.02562 * 5 4 3 29 29 H 1.08001 * 120.06003 * 0.02562 * 8 7 6 30 30 H 1.08001 * 119.93911 * 180.02562 * 9 8 7 31 31 H 1.08005 * 119.87752 * 180.02562 * 10 9 8 32 32 H 1.09008 * 109.47277 * 29.95592 * 12 11 10 33 33 H 1.09003 * 109.47325 * 149.95465 * 12 11 10 34 34 H 0.97000 * 120.00547 * 179.97438 * 16 15 13 35 35 H 1.08005 * 120.05648 * 180.29928 * 21 11 10 36 36 H 1.07992 * 119.66288 * 179.74569 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4337 1.2707 0.0005 5 6 4.0540 2.5049 0.0011 6 6 3.2528 3.6520 0.0005 7 6 3.8702 5.0011 0.0016 8 6 5.2573 5.1355 0.0038 9 6 5.8262 6.3927 0.0054 10 6 5.0222 7.5185 0.0042 11 6 3.6450 7.3911 0.0024 12 6 2.7758 8.6221 0.0017 13 6 2.4833 9.0314 1.4223 14 1 2.8868 8.4576 2.2435 15 6 1.7013 10.1387 1.6736 16 7 1.2103 10.8377 0.6736 17 14 1.3393 10.6464 3.4345 18 1 2.6142 10.9406 4.1369 19 1 0.4827 11.8593 3.4339 20 1 0.6329 9.5424 4.1326 21 6 3.0653 6.1384 0.0008 22 6 1.8683 3.5093 0.0048 23 7 1.3158 2.3125 -0.0010 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 4.0208 0.3642 0.0003 28 1 5.1312 2.5826 0.0011 29 1 5.8860 4.2573 0.0043 30 1 6.9011 6.4980 0.0066 31 1 5.4715 8.5006 0.0050 32 1 3.2942 9.4328 -0.5105 33 1 1.8402 8.4060 -0.5141 34 1 0.6599 11.6166 0.8504 35 1 1.9898 6.0400 -0.0055 36 1 1.2404 4.3879 0.0085 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239726837.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:15 Heat of formation + Delta-G solvation = -6.673148 kcal Electronic energy + Delta-G solvation = -18883.174422 eV Core-core repulsion = 15910.345719 eV Total energy + Delta-G solvation = -2972.828702 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.70488 -40.14983 -38.70069 -35.58626 -34.13103 -33.07687 -32.74456 -30.04344 -28.88856 -28.05547 -25.51598 -24.91841 -24.05827 -22.50837 -21.31148 -19.48656 -18.52770 -17.99376 -17.61412 -17.00617 -16.74646 -16.42935 -15.85742 -15.37286 -15.12093 -14.75991 -14.70220 -14.47739 -14.41046 -13.88893 -13.43289 -13.38271 -13.20506 -12.83316 -12.71115 -12.59739 -12.28942 -12.19723 -11.94705 -11.59780 -11.33275 -11.04325 -10.64092 -10.60694 -10.18342 -9.48974 -8.79487 -8.21082 -6.34532 -0.32387 0.20607 0.66333 0.96957 1.39012 1.41314 1.49671 2.12177 2.38685 2.67981 3.09701 3.18254 3.26427 3.63833 3.88562 3.93135 4.10208 4.20016 4.35566 4.40192 4.41447 4.45550 4.63042 4.69613 4.74930 4.77924 4.83652 5.10089 5.15979 5.23792 5.35490 5.39358 5.41392 5.65761 5.69819 5.76557 6.07762 6.11468 6.19092 6.26523 6.77953 6.78883 7.34187 8.88041 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019686 B = 0.004233 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.003108 B = 6612.773344 C = 7598.500404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.316 6.316 3 C 0.294 3.706 4 C -0.180 4.180 5 C -0.027 4.027 6 C -0.129 4.129 7 C -0.044 4.044 8 C -0.125 4.125 9 C -0.109 4.109 10 C -0.136 4.136 11 C -0.062 4.062 12 C 0.056 3.944 13 C -0.530 4.530 14 H 0.054 0.946 15 C 0.006 3.994 16 N -0.930 5.930 17 Si 0.963 3.037 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.270 1.270 21 C -0.130 4.130 22 C 0.131 3.869 23 N -0.554 5.554 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.126 0.874 27 H 0.173 0.827 28 H 0.179 0.821 29 H 0.160 0.840 30 H 0.154 0.846 31 H 0.114 0.886 32 H 0.004 0.996 33 H 0.001 0.999 34 H 0.266 0.734 35 H 0.110 0.890 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.466 -20.474 -1.489 21.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.223 6.223 3 C 0.115 3.885 4 C -0.200 4.200 5 C -0.052 4.052 6 C -0.131 4.131 7 C -0.045 4.045 8 C -0.143 4.143 9 C -0.126 4.126 10 C -0.154 4.154 11 C -0.062 4.062 12 C 0.019 3.981 13 C -0.568 4.568 14 H 0.072 0.928 15 C -0.192 4.192 16 N -0.570 5.570 17 Si 0.788 3.212 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.195 1.195 21 C -0.148 4.148 22 C -0.025 4.025 23 N -0.278 5.278 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.144 0.856 27 H 0.190 0.810 28 H 0.196 0.804 29 H 0.177 0.823 30 H 0.172 0.828 31 H 0.132 0.868 32 H 0.023 0.977 33 H 0.019 0.981 34 H 0.075 0.925 35 H 0.128 0.872 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.534 -20.695 -1.539 21.477 hybrid contribution -0.316 1.267 0.648 1.458 sum 5.218 -19.427 -0.891 20.136 Atomic orbital electron populations 1.23035 0.76159 1.04648 1.01980 1.86203 1.24083 1.24160 1.87843 1.20333 0.90522 0.84707 0.92938 1.21330 0.91248 1.00528 1.06937 1.21837 1.02008 0.89318 0.92004 1.19688 0.94150 0.93627 1.05639 1.18602 0.94014 0.90413 1.01436 1.21384 0.93023 0.98476 1.01406 1.21334 1.00763 0.91523 0.99012 1.21260 0.92917 0.99657 1.01566 1.20293 0.95105 0.95264 0.95537 1.18103 0.93153 0.90570 0.96275 1.21347 1.31423 1.11546 0.92451 0.92775 1.25903 0.95398 0.96239 1.01687 1.70067 1.35052 1.18747 1.33086 0.85527 0.78543 0.77761 0.79417 1.19116 1.20500 1.19472 1.21079 0.99500 0.91769 1.02445 1.22640 0.92992 0.93537 0.93303 1.67241 1.41575 0.99056 1.19906 0.93001 0.92872 0.85562 0.80978 0.80350 0.82290 0.82810 0.86800 0.97740 0.98055 0.92545 0.87179 0.82710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.38 113.37 1.18 1.83 16 2 O -0.32 -7.22 10.47 -89.68 -0.94 -8.16 16 3 C 0.29 7.49 7.49 84.81 0.64 8.13 16 4 C -0.18 -3.63 10.03 22.43 0.22 -3.40 16 5 C -0.03 -0.55 9.53 22.65 0.22 -0.33 16 6 C -0.13 -3.53 5.89 -19.94 -0.12 -3.65 16 7 C -0.04 -1.37 5.88 -20.05 -0.12 -1.49 16 8 C -0.13 -3.24 9.44 22.48 0.21 -3.03 16 9 C -0.11 -3.06 10.03 22.24 0.22 -2.84 16 10 C -0.14 -5.09 9.69 22.31 0.22 -4.87 16 11 C -0.06 -2.72 5.06 -19.90 -0.10 -2.82 16 12 C 0.06 3.02 5.10 29.10 0.15 3.17 16 13 C -0.53 -30.48 9.09 25.60 0.23 -30.25 16 14 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 15 C 0.01 0.35 5.46 84.65 0.46 0.81 16 16 N -0.93 -56.35 13.29 21.44 0.28 -56.06 16 17 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 21 C -0.13 -5.08 9.09 22.48 0.20 -4.88 16 22 C 0.13 3.93 10.59 84.92 0.90 4.83 16 23 N -0.55 -16.27 9.19 -308.06 -2.83 -19.10 16 24 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 25 H 0.05 1.01 8.10 -2.38 -0.02 0.99 16 26 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 28 H 0.18 2.26 6.32 -2.91 -0.02 2.24 16 29 H 0.16 2.65 6.27 -2.91 -0.02 2.63 16 30 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.11 4.25 8.06 -2.91 -0.02 4.22 16 32 H 0.00 0.25 8.08 -2.38 -0.02 0.23 16 33 H 0.00 0.07 8.08 -2.39 -0.02 0.05 16 34 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.11 4.36 6.23 -2.91 -0.02 4.35 16 36 H 0.16 4.78 6.22 -2.91 -0.02 4.76 16 Total: -1.00 -69.43 312.32 4.14 -65.29 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 1.09 Total: 10.27 kcal Atomic # 6 Polarization: -43.31 SS G_CDS: 4.52 Total: -38.80 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -2.55 Total: -75.16 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.94 Total: -8.16 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -69.43 4.14 -65.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239726837.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.614 kcal (2) G-P(sol) polarization free energy of solvation -69.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds