Wall clock time and date at job start Mon Mar 30 2020 00:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35650 * 117.00561 * 2 1 4 4 C 1.39012 * 119.55914 * 179.97438 * 3 2 1 5 5 C 1.38153 * 119.24048 * 180.02562 * 4 3 2 6 6 C 1.39916 * 118.37782 * 359.75224 * 5 4 3 7 7 C 1.48371 * 120.47539 * 180.26299 * 6 5 4 8 8 C 1.39342 * 120.12176 * 359.95210 * 7 6 5 9 9 C 1.38012 * 119.87782 * 179.74668 * 8 7 6 10 10 C 1.38324 * 120.12059 * 0.55335 * 9 8 7 11 11 C 1.50707 * 119.87801 * 179.72406 * 10 9 8 12 12 C 1.50695 * 109.46620 * 269.97732 * 11 10 9 13 13 H 1.08002 * 120.00386 * 359.97438 * 12 11 10 14 14 C 1.37887 * 119.99917 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99613 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00140 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47257 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47260 * 120.00130 * 16 14 12 19 19 H 1.48499 * 109.47099 * 239.99833 * 16 14 12 20 20 C 1.38319 * 120.24511 * 359.69940 * 10 9 8 21 21 C 1.38014 * 120.12339 * 0.02562 * 20 10 9 22 22 C 1.39183 * 119.05073 * 0.49084 * 6 5 4 23 23 N 1.31821 * 120.66421 * 359.49463 * 22 6 5 24 24 H 1.08996 * 109.47278 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46989 * 300.00543 * 1 2 3 26 26 H 1.09004 * 109.46891 * 60.00233 * 1 2 3 27 27 H 1.08007 * 120.37875 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.81188 * 179.97438 * 5 4 3 29 29 H 1.08006 * 120.06029 * 0.02562 * 8 7 6 30 30 H 1.08005 * 119.94396 * 180.27231 * 9 8 7 31 31 H 1.08995 * 109.46787 * 29.97512 * 11 10 9 32 32 H 1.09000 * 109.46889 * 149.97682 * 11 10 9 33 33 H 0.96996 * 119.99535 * 180.02562 * 15 14 12 34 34 H 1.08005 * 119.93821 * 180.02562 * 20 10 9 35 35 H 1.08008 * 120.06310 * 180.02562 * 21 20 10 36 36 H 1.08002 * 119.67018 * 179.77996 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 3.4336 1.2705 0.0005 5 6 4.0541 2.5049 0.0011 6 6 3.2529 3.6519 -0.0043 7 6 3.8703 5.0010 -0.0098 8 6 5.2572 5.1354 -0.0087 9 6 5.8262 6.3927 -0.0192 10 6 5.0223 7.5184 -0.0192 11 6 5.6494 8.8888 -0.0243 12 6 5.8625 9.3489 1.3947 13 1 5.5724 8.7129 2.2180 14 6 6.4268 10.5824 1.6421 15 7 6.7796 11.3571 0.6396 16 14 6.6902 11.1531 3.4011 17 1 6.2118 10.1054 4.3384 18 1 8.1366 11.3999 3.6301 19 1 5.9312 12.4082 3.6332 20 6 3.6450 7.3910 -0.0150 21 6 3.0653 6.1385 -0.0102 22 6 1.8684 3.5093 0.0005 23 7 1.3158 2.3124 0.0000 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 4.0208 0.3640 0.0014 28 1 5.1313 2.5826 0.0019 29 1 5.8858 4.2571 -0.0043 30 1 6.9011 6.4980 -0.0228 31 1 6.6084 8.8475 -0.5408 32 1 4.9899 9.5882 -0.5380 33 1 7.1769 12.2247 0.8136 34 1 3.0220 8.2733 -0.0154 35 1 1.9897 6.0401 -0.0074 36 1 1.2404 4.3879 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239727142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:17 Heat of formation + Delta-G solvation = 10.964249 kcal Electronic energy + Delta-G solvation = -18645.063017 eV Core-core repulsion = 15672.999130 eV Total energy + Delta-G solvation = -2972.063888 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.73272 -38.92476 -37.69755 -33.90935 -32.73219 -32.02822 -30.41868 -29.84089 -27.66034 -26.47154 -24.08731 -23.69883 -22.26690 -21.49312 -20.17889 -18.56038 -17.05985 -16.61602 -16.32604 -16.13902 -15.28545 -14.63874 -14.59313 -14.14386 -13.97754 -13.68916 -13.64696 -13.40104 -12.66986 -12.63890 -12.28923 -12.06745 -11.83276 -11.38911 -11.32694 -11.11789 -10.80494 -10.57251 -10.33384 -10.08838 -9.71143 -9.59444 -9.50673 -8.86303 -8.47807 -8.40996 -7.42279 -6.08963 -4.13318 0.78576 1.12371 1.96502 2.23732 2.95410 3.26517 3.34448 3.39381 3.72653 4.19301 4.35687 4.53152 4.72162 4.82847 4.89440 5.00608 5.11401 5.13040 5.25385 5.33336 5.38489 5.47126 5.61677 5.77313 5.90136 5.92458 6.11501 6.26150 6.30765 6.52364 6.60702 6.97435 7.05501 7.09747 7.11702 7.43723 7.60941 7.75092 7.76974 7.86709 8.25636 8.92274 9.50948 11.00687 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.042556 B = 0.003149 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.803000 B = 8888.931769 C = 8946.448567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.312 6.312 3 C 0.302 3.698 4 C -0.183 4.183 5 C -0.043 4.043 6 C -0.104 4.104 7 C -0.081 4.081 8 C -0.108 4.108 9 C -0.123 4.123 10 C -0.023 4.023 11 C 0.044 3.956 12 C -0.512 4.512 13 H 0.058 0.942 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.122 4.122 21 C -0.108 4.108 22 C 0.138 3.862 23 N -0.536 5.536 24 H 0.093 0.907 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.140 0.860 28 H 0.144 0.856 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.030 0.970 32 H 0.030 0.970 33 H 0.262 0.738 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.744 -18.805 -2.404 20.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.219 6.219 3 C 0.124 3.876 4 C -0.204 4.204 5 C -0.069 4.069 6 C -0.106 4.106 7 C -0.082 4.082 8 C -0.126 4.126 9 C -0.141 4.141 10 C -0.023 4.023 11 C 0.008 3.992 12 C -0.550 4.550 13 H 0.076 0.924 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.723 3.277 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.140 4.140 21 C -0.126 4.126 22 C -0.018 4.018 23 N -0.258 5.258 24 H 0.112 0.888 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.158 0.842 28 H 0.162 0.838 29 H 0.132 0.868 30 H 0.139 0.861 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.484 -19.005 -2.443 21.380 hybrid contribution 0.829 0.621 0.989 1.432 sum -8.655 -18.385 -1.454 20.372 Atomic orbital electron populations 1.22819 0.77459 1.02671 1.02464 1.86203 1.22751 1.24793 1.88143 1.19851 0.89422 0.84637 0.93690 1.20971 0.91882 0.99380 1.08130 1.21516 1.00734 0.90490 0.94114 1.19709 0.94074 0.93657 1.03192 1.18279 0.93287 0.90410 1.06204 1.21055 0.93454 0.97352 1.00726 1.21042 1.00117 0.91599 1.01320 1.20829 0.93166 0.97855 0.90464 1.18414 0.96096 0.86856 0.97869 1.21078 1.40783 1.01782 0.91379 0.92371 1.25020 0.95434 0.96596 0.97298 1.69965 1.42096 1.10582 1.30585 0.86472 0.77878 0.78691 0.84647 1.19637 1.20907 1.20906 1.21041 0.95132 0.96589 1.01255 1.21060 0.98694 0.92126 1.00756 1.22537 0.92219 0.93418 0.93647 1.67246 1.40802 0.98749 1.19015 0.88845 0.92364 0.92384 0.84170 0.83824 0.86784 0.86077 0.95180 0.95170 0.92836 0.86033 0.86699 0.82094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.38 101.05 1.05 1.40 16 2 O -0.31 -3.63 10.47 -18.65 -0.20 -3.83 16 3 C 0.30 3.87 7.49 -17.07 -0.13 3.74 16 4 C -0.18 -2.09 10.03 -39.33 -0.39 -2.49 16 5 C -0.04 -0.51 9.53 -38.98 -0.37 -0.88 16 6 C -0.10 -1.40 5.89 -104.75 -0.62 -2.02 16 7 C -0.08 -1.24 5.88 -104.90 -0.62 -1.86 16 8 C -0.11 -1.70 9.44 -39.25 -0.37 -2.07 16 9 C -0.12 -2.27 9.68 -39.63 -0.38 -2.66 16 10 C -0.02 -0.48 5.07 -104.56 -0.53 -1.01 16 11 C 0.04 1.11 5.10 -29.03 -0.15 0.96 16 12 C -0.51 -14.03 9.09 -34.44 -0.31 -14.34 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 14 C 0.06 1.62 5.46 -17.81 -0.10 1.52 16 15 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 16 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C -0.12 -2.26 9.68 -39.63 -0.38 -2.65 16 21 C -0.11 -1.71 9.44 -39.25 -0.37 -2.08 16 22 C 0.14 1.79 10.59 -17.21 -0.18 1.60 16 23 N -0.54 -7.14 9.19 -13.05 -0.12 -7.26 16 24 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 26 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 27 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 28 H 0.14 1.40 6.32 -52.49 -0.33 1.07 16 29 H 0.11 1.45 6.27 -52.48 -0.33 1.12 16 30 H 0.12 2.17 8.06 -52.48 -0.42 1.74 16 31 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.12 2.18 8.06 -52.48 -0.42 1.75 16 35 H 0.12 1.47 6.23 -52.48 -0.33 1.14 16 36 H 0.16 1.79 6.22 -52.49 -0.33 1.47 16 LS Contribution 312.32 15.07 4.71 4.71 Total: -1.00 -30.50 312.32 -7.98 -38.48 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.23 Total: -0.25 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -3.86 Total: -22.82 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.62 Total: -32.50 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: -0.20 Total: -3.83 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.50 -7.98 -38.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239727142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.446 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds