Wall clock time and date at job start Mon Mar 30 2020 00:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35650 * 117.00561 * 2 1 4 4 C 1.39012 * 119.55914 * 179.97438 * 3 2 1 5 5 C 1.38153 * 119.24048 * 180.02562 * 4 3 2 6 6 C 1.39916 * 118.37782 * 359.75224 * 5 4 3 7 7 C 1.48371 * 120.47539 * 180.26299 * 6 5 4 8 8 C 1.39342 * 120.12176 * 359.95210 * 7 6 5 9 9 C 1.38012 * 119.87782 * 179.74668 * 8 7 6 10 10 C 1.38324 * 120.12059 * 0.55335 * 9 8 7 11 11 C 1.50707 * 119.87801 * 179.72406 * 10 9 8 12 12 C 1.50695 * 109.46620 * 269.97732 * 11 10 9 13 13 H 1.08002 * 120.00386 * 359.97438 * 12 11 10 14 14 C 1.37887 * 119.99917 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99613 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00140 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47257 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47260 * 120.00130 * 16 14 12 19 19 H 1.48499 * 109.47099 * 239.99833 * 16 14 12 20 20 C 1.38319 * 120.24511 * 359.69940 * 10 9 8 21 21 C 1.38014 * 120.12339 * 0.02562 * 20 10 9 22 22 C 1.39183 * 119.05073 * 0.49084 * 6 5 4 23 23 N 1.31821 * 120.66421 * 359.49463 * 22 6 5 24 24 H 1.08996 * 109.47278 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46989 * 300.00543 * 1 2 3 26 26 H 1.09004 * 109.46891 * 60.00233 * 1 2 3 27 27 H 1.08007 * 120.37875 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.81188 * 179.97438 * 5 4 3 29 29 H 1.08006 * 120.06029 * 0.02562 * 8 7 6 30 30 H 1.08005 * 119.94396 * 180.27231 * 9 8 7 31 31 H 1.08995 * 109.46787 * 29.97512 * 11 10 9 32 32 H 1.09000 * 109.46889 * 149.97682 * 11 10 9 33 33 H 0.96996 * 119.99535 * 180.02562 * 15 14 12 34 34 H 1.08005 * 119.93821 * 180.02562 * 20 10 9 35 35 H 1.08008 * 120.06310 * 180.02562 * 21 20 10 36 36 H 1.08002 * 119.67018 * 179.77996 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 3.4336 1.2705 0.0005 5 6 4.0541 2.5049 0.0011 6 6 3.2529 3.6519 -0.0043 7 6 3.8703 5.0010 -0.0098 8 6 5.2572 5.1354 -0.0087 9 6 5.8262 6.3927 -0.0192 10 6 5.0223 7.5184 -0.0192 11 6 5.6494 8.8888 -0.0243 12 6 5.8625 9.3489 1.3947 13 1 5.5724 8.7129 2.2180 14 6 6.4268 10.5824 1.6421 15 7 6.7796 11.3571 0.6396 16 14 6.6902 11.1531 3.4011 17 1 6.2118 10.1054 4.3384 18 1 8.1366 11.3999 3.6301 19 1 5.9312 12.4082 3.6332 20 6 3.6450 7.3910 -0.0150 21 6 3.0653 6.1385 -0.0102 22 6 1.8684 3.5093 0.0005 23 7 1.3158 2.3124 0.0000 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 4.0208 0.3640 0.0014 28 1 5.1313 2.5826 0.0019 29 1 5.8858 4.2571 -0.0043 30 1 6.9011 6.4980 -0.0228 31 1 6.6084 8.8475 -0.5408 32 1 4.9899 9.5882 -0.5380 33 1 7.1769 12.2247 0.8136 34 1 3.0220 8.2733 -0.0154 35 1 1.9897 6.0401 -0.0074 36 1 1.2404 4.3879 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239727142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:16 Heat of formation + Delta-G solvation = -6.795842 kcal Electronic energy + Delta-G solvation = -18645.833152 eV Core-core repulsion = 15672.999130 eV Total energy + Delta-G solvation = -2972.834023 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.67946 -40.14878 -38.70558 -35.62963 -34.12172 -33.24753 -31.74258 -31.22775 -28.76223 -27.79370 -25.51032 -24.87900 -23.63813 -22.71141 -21.56850 -19.44184 -18.52538 -18.02433 -17.72221 -16.97976 -16.75821 -16.14250 -15.82445 -15.21813 -15.09670 -14.86153 -14.68537 -14.51543 -14.44795 -13.81864 -13.67284 -13.31741 -13.24800 -12.89136 -12.64800 -12.59980 -12.34259 -12.16688 -11.76976 -11.56109 -11.40498 -10.98121 -10.63430 -10.60527 -10.05143 -9.74791 -8.70890 -8.19015 -6.33946 -0.29152 0.22213 0.61798 0.97881 1.39386 1.40361 1.53553 2.14478 2.39255 2.69725 3.10156 3.18141 3.29316 3.65423 3.88216 3.93460 4.10564 4.19831 4.30744 4.39415 4.44496 4.46941 4.65110 4.68275 4.77076 4.77962 4.87447 5.09870 5.15502 5.22187 5.35613 5.41294 5.42227 5.62865 5.70533 5.75587 6.09144 6.10556 6.21352 6.25787 6.79280 6.80383 7.34785 8.88651 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.042556 B = 0.003149 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.803000 B = 8888.931769 C = 8946.448567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.319 6.319 3 C 0.294 3.706 4 C -0.184 4.184 5 C -0.036 4.036 6 C -0.124 4.124 7 C -0.065 4.065 8 C -0.103 4.103 9 C -0.133 4.133 10 C -0.060 4.060 11 C 0.054 3.946 12 C -0.526 4.526 13 H 0.054 0.946 14 C 0.004 3.996 15 N -0.930 5.930 16 Si 0.965 3.035 17 H -0.265 1.265 18 H -0.276 1.276 19 H -0.277 1.277 20 C -0.133 4.133 21 C -0.106 4.106 22 C 0.136 3.864 23 N -0.550 5.550 24 H 0.123 0.877 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.165 0.835 28 H 0.167 0.833 29 H 0.150 0.850 30 H 0.118 0.882 31 H 0.004 0.996 32 H 0.003 0.997 33 H 0.265 0.735 34 H 0.117 0.883 35 H 0.147 0.853 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.449 -21.464 -1.427 23.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.226 6.226 3 C 0.116 3.884 4 C -0.204 4.204 5 C -0.061 4.061 6 C -0.126 4.126 7 C -0.066 4.066 8 C -0.121 4.121 9 C -0.151 4.151 10 C -0.060 4.060 11 C 0.017 3.983 12 C -0.564 4.564 13 H 0.072 0.928 14 C -0.194 4.194 15 N -0.570 5.570 16 Si 0.790 3.210 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.151 4.151 21 C -0.123 4.123 22 C -0.019 4.019 23 N -0.273 5.273 24 H 0.141 0.859 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.183 0.817 28 H 0.184 0.816 29 H 0.168 0.832 30 H 0.136 0.864 31 H 0.023 0.977 32 H 0.022 0.978 33 H 0.074 0.926 34 H 0.135 0.865 35 H 0.164 0.836 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -10.199 -21.683 -1.470 24.007 hybrid contribution 0.936 1.241 0.630 1.677 sum -9.263 -20.441 -0.839 22.458 Atomic orbital electron populations 1.23040 0.76014 1.04603 1.02146 1.86205 1.24236 1.24324 1.87827 1.20237 0.90251 0.84864 0.93084 1.21265 0.91596 1.00264 1.07256 1.21800 1.01815 0.89963 0.92533 1.19630 0.94511 0.93025 1.05453 1.18521 0.93180 0.91322 1.03602 1.21336 0.94187 0.97171 0.99385 1.21063 0.99897 0.92224 1.01903 1.20509 0.94486 0.96257 0.94796 1.18139 0.94547 0.89326 0.96307 1.21399 1.40568 1.02030 0.92435 0.92753 1.25928 0.95086 0.96722 1.01701 1.70086 1.42972 1.11073 1.32894 0.85392 0.78026 0.78276 0.79343 1.18947 1.20153 1.20217 1.21047 0.94167 0.97936 1.01934 1.21324 1.00442 0.90979 0.99590 1.22773 0.92366 0.93882 0.92913 1.67279 1.41219 0.99022 1.19804 0.85885 0.92701 0.92641 0.81712 0.81571 0.83249 0.86424 0.97742 0.97819 0.92566 0.86532 0.83580 0.80801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.38 113.37 1.18 1.72 16 2 O -0.32 -6.60 10.47 -89.64 -0.94 -7.54 16 3 C 0.29 6.72 7.49 84.81 0.64 7.36 16 4 C -0.18 -3.55 10.03 22.44 0.22 -3.33 16 5 C -0.04 -0.72 9.53 22.66 0.22 -0.51 16 6 C -0.12 -2.96 5.89 -19.94 -0.12 -3.08 16 7 C -0.07 -1.85 5.88 -20.05 -0.12 -1.97 16 8 C -0.10 -3.03 9.44 22.48 0.21 -2.82 16 9 C -0.13 -4.94 9.68 22.24 0.22 -4.73 16 10 C -0.06 -2.61 5.07 -19.82 -0.10 -2.71 16 11 C 0.05 2.85 5.10 29.10 0.15 3.00 16 12 C -0.53 -29.89 9.09 25.60 0.23 -29.66 16 13 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 14 C 0.00 0.21 5.46 84.66 0.46 0.67 16 15 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 16 Si 0.97 44.11 29.54 68.60 2.03 46.13 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 C -0.13 -5.00 9.68 22.24 0.22 -4.78 16 21 C -0.11 -3.17 9.44 22.48 0.21 -2.96 16 22 C 0.14 3.18 10.59 84.92 0.90 4.08 16 23 N -0.55 -13.37 9.19 -308.06 -2.83 -16.20 16 24 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 26 H 0.05 0.86 8.10 -2.38 -0.02 0.84 16 27 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 28 H 0.17 2.47 6.32 -2.91 -0.02 2.45 16 29 H 0.15 3.24 6.27 -2.91 -0.02 3.23 16 30 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 31 H 0.00 0.24 8.08 -2.39 -0.02 0.22 16 32 H 0.00 0.20 8.08 -2.39 -0.02 0.18 16 33 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 34 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 35 H 0.15 3.38 6.23 -2.91 -0.02 3.36 16 36 H 0.18 3.41 6.22 -2.91 -0.02 3.39 16 Total: -1.00 -67.51 312.32 4.14 -63.36 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 1.09 Total: 9.50 kcal Atomic # 6 Polarization: -44.22 SS G_CDS: 4.51 Total: -39.70 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -2.55 Total: -71.75 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.94 Total: -7.54 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -67.51 4.14 -63.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239727142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.568 kcal (2) G-P(sol) polarization free energy of solvation -67.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds