Wall clock time and date at job start Mon Mar 30 2020 01:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31265 * 119.80140 * 2 1 4 4 C 1.33019 * 121.72488 * 180.02562 * 3 2 1 5 5 C 1.47973 * 119.44791 * 180.02562 * 4 3 2 6 6 C 1.39612 * 120.55998 * 184.99947 * 5 4 3 7 7 N 1.31660 * 120.55770 * 179.97438 * 6 5 4 8 8 C 1.31962 * 121.87832 * 359.97438 * 7 6 5 9 9 C 1.38341 * 121.08537 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.34185 * 180.02562 * 9 8 7 11 11 N 1.46899 * 109.47304 * 89.99815 * 10 9 8 12 12 C 1.38371 * 119.30905 * 359.73773 * 9 8 7 13 13 C 1.39888 * 121.10012 * 359.74553 * 4 3 2 14 14 C 1.36613 * 119.46937 * 0.50771 * 13 4 3 15 15 C 1.40951 * 119.79601 * 180.02562 * 2 1 3 16 16 C 1.41055 * 120.55588 * 359.95937 * 15 2 1 17 17 H 1.07995 * 119.99742 * 334.69867 * 16 15 2 18 18 C 1.40023 * 119.99795 * 154.69604 * 16 15 2 19 19 N 1.30788 * 120.00713 * 343.67608 * 18 16 15 20 20 Si 1.86800 * 119.99768 * 163.67424 * 18 16 15 21 21 H 1.48503 * 109.47161 * 90.00207 * 20 18 16 22 22 H 1.48502 * 109.47429 * 209.99960 * 20 18 16 23 23 H 1.48501 * 109.47282 * 330.00038 * 20 18 16 24 24 H 1.09003 * 109.47123 * 269.97879 * 1 2 3 25 25 H 1.09000 * 109.47445 * 29.97614 * 1 2 3 26 26 H 1.09002 * 109.47277 * 149.98126 * 1 2 3 27 27 H 1.07995 * 119.71912 * 359.95643 * 6 5 4 28 28 H 1.08004 * 119.45740 * 180.02562 * 8 7 6 29 29 H 1.09005 * 109.46643 * 209.99762 * 10 9 8 30 30 H 1.09000 * 109.47376 * 329.99191 * 10 9 8 31 31 H 1.00903 * 110.99985 * 179.97438 * 11 10 9 32 32 H 1.00894 * 111.00166 * 303.95208 * 11 10 9 33 33 H 1.07999 * 120.85640 * 180.28201 * 12 9 8 34 34 H 1.08000 * 120.26610 * 180.26532 * 13 4 3 35 35 H 1.07999 * 120.79551 * 179.77900 * 14 13 4 36 36 H 0.97000 * 120.00279 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1594 1.1391 0.0000 4 6 3.4888 1.1837 -0.0005 5 6 4.1726 2.4959 0.0001 6 6 5.5627 2.5721 -0.1052 7 7 6.1710 3.7397 -0.1051 8 6 5.5031 4.8736 -0.0075 9 6 4.1239 4.8831 0.1004 10 6 3.3779 6.1878 0.2104 11 7 3.0279 6.6666 -1.1335 12 6 3.4362 3.6823 0.1002 13 6 4.2512 0.0108 0.0043 14 6 3.6203 -1.2009 -0.0010 15 6 2.2074 -1.2232 -0.0005 16 6 1.5096 -2.4491 -0.0002 17 1 0.5079 -2.5001 0.4001 18 6 2.1158 -3.5997 -0.5190 19 7 3.1730 -3.4948 -1.2818 20 14 1.4145 -5.2849 -0.1216 21 1 0.4056 -5.6555 -1.1464 22 1 2.5090 -6.2885 -0.1189 23 1 0.7712 -5.2503 1.2165 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 6.1438 1.6655 -0.1870 28 1 6.0419 5.8095 -0.0118 29 1 2.4677 6.0379 0.7912 30 1 4.0080 6.9259 0.7066 31 1 2.5262 7.5408 -1.0866 32 1 3.8499 6.7518 -1.7124 33 1 2.3592 3.6608 0.1785 34 1 5.3299 0.0628 0.0081 35 1 4.1877 -2.1198 -0.0011 36 1 3.5931 -4.2920 -1.6409 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239791246.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:04 Heat of formation + Delta-G solvation = 45.197150 kcal Electronic energy + Delta-G solvation = -19224.748025 eV Core-core repulsion = 16286.461339 eV Total energy + Delta-G solvation = -2938.286686 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.79986 -38.41303 -35.13481 -34.43932 -32.65893 -31.47376 -30.64197 -29.82802 -27.08896 -25.44495 -25.08309 -22.96648 -22.03148 -20.65148 -19.90241 -17.55124 -16.67774 -16.16950 -16.02409 -15.46272 -14.93619 -14.65433 -14.39415 -13.93219 -13.46281 -13.16120 -12.92743 -12.74221 -12.46229 -12.23832 -12.02591 -11.76878 -11.67097 -11.44610 -11.35874 -11.01645 -10.96474 -10.71509 -9.96484 -9.65010 -9.22205 -8.99729 -8.86551 -8.62595 -8.35192 -8.14801 -7.35634 -7.04930 -4.62142 1.33135 1.76045 2.59780 2.85987 2.90762 2.94786 3.10702 3.68246 4.15189 4.52562 4.74473 4.80725 5.01655 5.09901 5.35923 5.47299 5.48647 5.58913 5.68204 5.86431 6.11683 6.16569 6.27970 6.42876 6.57681 6.60778 6.64710 6.74706 6.80434 6.92365 7.02149 7.04834 7.17503 7.22410 7.35862 7.58531 7.69299 7.79769 8.23021 8.42739 8.43588 8.54563 9.49258 9.80797 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.033787 B = 0.004262 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.518133 B = 6567.863599 C = 7228.528064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.010 3.990 3 N -0.443 5.443 4 C -0.005 4.005 5 C -0.024 4.024 6 C 0.078 3.922 7 N -0.481 5.481 8 C 0.063 3.937 9 C -0.139 4.139 10 C 0.111 3.889 11 N -0.845 5.845 12 C -0.053 4.053 13 C -0.122 4.122 14 C -0.142 4.142 15 C 0.075 3.925 16 C -0.426 4.426 17 H 0.090 0.910 18 C 0.071 3.929 19 N -0.773 5.773 20 Si 0.915 3.085 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.257 1.257 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.153 0.847 28 H 0.140 0.860 29 H 0.080 0.920 30 H 0.034 0.966 31 H 0.340 0.660 32 H 0.341 0.659 33 H 0.138 0.862 34 H 0.102 0.898 35 H 0.127 0.873 36 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.355 8.240 1.864 8.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.136 4.136 3 N -0.152 5.152 4 C -0.139 4.139 5 C -0.026 4.026 6 C -0.081 4.081 7 N -0.189 5.189 8 C -0.095 4.095 9 C -0.141 4.141 10 C -0.020 4.020 11 N -0.375 5.375 12 C -0.080 4.080 13 C -0.143 4.143 14 C -0.167 4.167 15 C 0.070 3.930 16 C -0.455 4.455 17 H 0.108 0.892 18 C -0.150 4.150 19 N -0.396 5.396 20 Si 0.738 3.262 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.180 1.180 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.170 0.830 28 H 0.157 0.843 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.120 0.880 35 H 0.145 0.855 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.577 8.233 1.593 8.405 hybrid contribution 0.069 -0.874 0.313 0.931 sum 0.646 7.358 1.905 7.629 Atomic orbital electron populations 1.20267 0.90911 1.01351 1.00437 1.20998 0.95172 0.87908 1.09559 1.66703 1.08537 1.30507 1.09425 1.18516 0.89143 0.90112 1.16177 1.19694 0.93482 0.93121 0.96335 1.22796 0.91541 0.95382 0.98387 1.67510 1.40749 0.98393 1.12216 1.22319 0.90824 0.96127 1.00258 1.20613 0.94809 0.95477 1.03233 1.20557 0.98564 0.92391 0.90462 1.58652 1.29765 1.36148 1.12904 1.21518 1.00821 0.90225 0.95443 1.21272 0.98588 0.93416 1.01013 1.21298 0.94671 0.96623 1.04106 1.18439 0.92571 0.93188 0.88802 1.19737 1.01689 0.91930 1.32119 0.89160 1.26121 0.94190 1.02200 0.92504 1.69773 1.16753 1.32716 1.20325 0.86176 0.79637 0.79830 0.80519 1.19033 1.19760 1.18036 0.93254 0.93061 0.91422 0.83025 0.84310 0.90184 0.94817 0.84719 0.84632 0.84409 0.87983 0.85489 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 9.58 36.01 0.34 -1.11 16 2 C 0.01 0.25 6.86 -81.81 -0.56 -0.32 16 3 N -0.44 -10.70 9.39 -5.39 -0.05 -10.75 16 4 C -0.01 -0.13 6.74 -82.75 -0.56 -0.68 16 5 C -0.02 -0.48 5.89 -104.74 -0.62 -1.10 16 6 C 0.08 1.47 10.59 -17.11 -0.18 1.29 16 7 N -0.48 -8.63 10.35 -12.89 -0.13 -8.76 16 8 C 0.06 0.97 10.85 -17.46 -0.19 0.79 16 9 C -0.14 -2.17 5.40 -104.54 -0.56 -2.73 16 10 C 0.11 1.33 6.93 -4.98 -0.03 1.30 16 11 N -0.84 -9.45 9.61 -11.41 -0.11 -9.56 16 12 C -0.05 -1.00 9.37 -38.87 -0.36 -1.36 16 13 C -0.12 -2.81 9.39 -39.55 -0.37 -3.18 16 14 C -0.14 -3.51 8.73 -39.00 -0.34 -3.85 16 15 C 0.07 1.88 5.58 -106.64 -0.59 1.29 16 16 C -0.43 -10.20 8.14 -37.85 -0.31 -10.51 16 17 H 0.09 2.02 6.86 -52.49 -0.36 1.66 16 18 C 0.07 1.61 5.18 -17.33 -0.09 1.52 16 19 N -0.77 -18.23 10.95 55.55 0.61 -17.62 16 20 Si 0.92 16.81 29.59 -169.99 -5.03 11.78 16 21 H -0.27 -4.83 7.11 56.52 0.40 -4.42 16 22 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 24 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.07 1.32 6.76 -51.93 -0.35 0.97 16 27 H 0.15 2.66 6.21 -52.49 -0.33 2.33 16 28 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16 29 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 30 H 0.03 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.34 2.88 9.08 -39.29 -0.36 2.52 16 32 H 0.34 3.55 8.98 -39.29 -0.35 3.20 16 33 H 0.14 2.66 7.62 -52.49 -0.40 2.26 16 34 H 0.10 2.04 6.21 -52.49 -0.33 1.72 16 35 H 0.13 3.14 6.26 -52.49 -0.33 2.82 16 36 H 0.29 6.13 8.29 -40.82 -0.34 5.79 16 LS Contribution 307.25 15.07 4.63 4.63 Total: -1.00 -27.57 307.25 -8.56 -36.13 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -4.04 Total: 12.83 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -4.43 Total: -18.66 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.31 Total: -46.70 kcal Atomic # 14 Polarization: 16.81 SS G_CDS: -5.03 Total: 11.78 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.57 -8.56 -36.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239791246.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.324 kcal (2) G-P(sol) polarization free energy of solvation -27.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds