Wall clock time and date at job start Mon Mar 30 2020 01:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31265 * 119.80140 * 2 1 4 4 C 1.33019 * 121.72488 * 180.02562 * 3 2 1 5 5 C 1.47973 * 119.44791 * 180.02562 * 4 3 2 6 6 C 1.39612 * 120.55998 * 184.99947 * 5 4 3 7 7 N 1.31660 * 120.55770 * 179.97438 * 6 5 4 8 8 C 1.31962 * 121.87832 * 359.97438 * 7 6 5 9 9 C 1.38341 * 121.08537 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.34185 * 180.02562 * 9 8 7 11 11 N 1.46899 * 109.47304 * 89.99815 * 10 9 8 12 12 C 1.38371 * 119.30905 * 359.73773 * 9 8 7 13 13 C 1.39888 * 121.10012 * 359.74553 * 4 3 2 14 14 C 1.36613 * 119.46937 * 0.50771 * 13 4 3 15 15 C 1.40951 * 119.79601 * 180.02562 * 2 1 3 16 16 C 1.41055 * 120.55588 * 359.95937 * 15 2 1 17 17 H 1.07995 * 119.99742 * 334.69867 * 16 15 2 18 18 C 1.40023 * 119.99795 * 154.69604 * 16 15 2 19 19 N 1.30788 * 120.00713 * 343.67608 * 18 16 15 20 20 Si 1.86800 * 119.99768 * 163.67424 * 18 16 15 21 21 H 1.48503 * 109.47161 * 90.00207 * 20 18 16 22 22 H 1.48502 * 109.47429 * 209.99960 * 20 18 16 23 23 H 1.48501 * 109.47282 * 330.00038 * 20 18 16 24 24 H 1.09003 * 109.47123 * 269.97879 * 1 2 3 25 25 H 1.09000 * 109.47445 * 29.97614 * 1 2 3 26 26 H 1.09002 * 109.47277 * 149.98126 * 1 2 3 27 27 H 1.07995 * 119.71912 * 359.95643 * 6 5 4 28 28 H 1.08004 * 119.45740 * 180.02562 * 8 7 6 29 29 H 1.09005 * 109.46643 * 209.99762 * 10 9 8 30 30 H 1.09000 * 109.47376 * 329.99191 * 10 9 8 31 31 H 1.00903 * 110.99985 * 179.97438 * 11 10 9 32 32 H 1.00894 * 111.00166 * 303.95208 * 11 10 9 33 33 H 1.07999 * 120.85640 * 180.28201 * 12 9 8 34 34 H 1.08000 * 120.26610 * 180.26532 * 13 4 3 35 35 H 1.07999 * 120.79551 * 179.77900 * 14 13 4 36 36 H 0.97000 * 120.00279 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1594 1.1391 0.0000 4 6 3.4888 1.1837 -0.0005 5 6 4.1726 2.4959 0.0001 6 6 5.5627 2.5721 -0.1052 7 7 6.1710 3.7397 -0.1051 8 6 5.5031 4.8736 -0.0075 9 6 4.1239 4.8831 0.1004 10 6 3.3779 6.1878 0.2104 11 7 3.0279 6.6666 -1.1335 12 6 3.4362 3.6823 0.1002 13 6 4.2512 0.0108 0.0043 14 6 3.6203 -1.2009 -0.0010 15 6 2.2074 -1.2232 -0.0005 16 6 1.5096 -2.4491 -0.0002 17 1 0.5079 -2.5001 0.4001 18 6 2.1158 -3.5997 -0.5190 19 7 3.1730 -3.4948 -1.2818 20 14 1.4145 -5.2849 -0.1216 21 1 0.4056 -5.6555 -1.1464 22 1 2.5090 -6.2885 -0.1189 23 1 0.7712 -5.2503 1.2165 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 6.1438 1.6655 -0.1870 28 1 6.0419 5.8095 -0.0118 29 1 2.4677 6.0379 0.7912 30 1 4.0080 6.9259 0.7066 31 1 2.5262 7.5408 -1.0866 32 1 3.8499 6.7518 -1.7124 33 1 2.3592 3.6608 0.1785 34 1 5.3299 0.0628 0.0081 35 1 4.1877 -2.1198 -0.0011 36 1 3.5931 -4.2920 -1.6409 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239791246.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:04 Heat of formation + Delta-G solvation = 27.665293 kcal Electronic energy + Delta-G solvation = -19225.508264 eV Core-core repulsion = 16286.461339 eV Total energy + Delta-G solvation = -2939.046925 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.25709 -40.10781 -36.32166 -36.03361 -34.28799 -33.07448 -32.12266 -31.33886 -28.80189 -27.09226 -26.24268 -24.54958 -23.47658 -22.35589 -21.44735 -19.31239 -18.09355 -17.64058 -17.21995 -16.93268 -16.36477 -16.23856 -15.55864 -15.49434 -15.05039 -14.44936 -14.38863 -14.31065 -13.92132 -13.64676 -13.50187 -13.40771 -13.16269 -13.01220 -12.90663 -12.66481 -12.44606 -12.19579 -11.68075 -11.30489 -10.73170 -10.40125 -10.25064 -10.10924 -9.96765 -9.56451 -9.07656 -8.75224 -6.42710 -0.13904 0.33814 0.91960 1.11638 1.39761 1.51776 1.57649 2.15129 2.59357 2.98637 3.47284 3.65811 3.68441 3.84047 3.91182 4.07341 4.14204 4.17962 4.37095 4.52840 4.61409 4.63201 4.78695 4.92704 4.95997 4.98083 5.00288 5.10643 5.23251 5.34473 5.45130 5.50017 5.69068 5.85753 5.94519 5.98682 6.21811 6.43664 6.63920 6.66193 6.73542 7.04776 7.67584 8.14527 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.033787 B = 0.004262 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.518133 B = 6567.863599 C = 7228.528064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.013 4.013 3 N -0.458 5.458 4 C -0.012 4.012 5 C -0.054 4.054 6 C 0.076 3.924 7 N -0.492 5.492 8 C 0.076 3.924 9 C -0.130 4.130 10 C 0.115 3.885 11 N -0.858 5.858 12 C -0.061 4.061 13 C -0.130 4.130 14 C -0.163 4.163 15 C 0.045 3.955 16 C -0.452 4.452 17 H 0.098 0.902 18 C 0.034 3.966 19 N -0.806 5.806 20 Si 0.989 3.011 21 H -0.259 1.259 22 H -0.267 1.267 23 H -0.254 1.254 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.157 0.843 28 H 0.181 0.819 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.357 0.643 32 H 0.347 0.653 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.488 9.804 2.134 10.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.159 4.159 3 N -0.166 5.166 4 C -0.147 4.147 5 C -0.057 4.057 6 C -0.082 4.082 7 N -0.200 5.200 8 C -0.082 4.082 9 C -0.132 4.132 10 C -0.016 4.016 11 N -0.390 5.390 12 C -0.089 4.089 13 C -0.151 4.151 14 C -0.188 4.188 15 C 0.041 3.959 16 C -0.480 4.480 17 H 0.116 0.884 18 C -0.184 4.184 19 N -0.430 5.430 20 Si 0.808 3.192 21 H -0.183 1.183 22 H -0.192 1.192 23 H -0.177 1.177 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.175 0.825 28 H 0.198 0.802 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.172 0.828 32 H 0.160 0.840 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.701 9.819 1.858 10.018 hybrid contribution 0.133 -1.085 0.210 1.113 sum 0.834 8.734 2.069 9.014 Atomic orbital electron populations 1.20254 0.88625 1.01816 1.01505 1.21584 0.96985 0.87774 1.09521 1.66793 1.09105 1.30549 1.10186 1.19025 0.89189 0.91567 1.14910 1.19690 0.94297 0.92519 0.99168 1.22855 0.90907 0.96296 0.98185 1.67602 1.40974 0.98667 1.12741 1.23040 0.91076 0.96841 0.97247 1.20966 0.95111 0.95984 1.01150 1.20558 0.98739 0.91066 0.91242 1.58577 1.30391 1.37527 1.12528 1.21572 1.00427 0.91082 0.95773 1.21515 0.99843 0.93003 1.00689 1.21349 0.95006 0.96892 1.05546 1.18788 0.93051 0.94268 0.89830 1.19995 1.02361 0.92452 1.33223 0.88407 1.26981 0.94241 1.05577 0.91619 1.69820 1.17973 1.34142 1.21077 0.85084 0.78950 0.74842 0.80293 1.18323 1.19151 1.17710 0.91777 0.92222 0.91170 0.82540 0.80159 0.90296 0.91645 0.82809 0.84022 0.85630 0.85794 0.86429 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.63 9.58 71.24 0.68 -1.95 16 2 C -0.01 -0.65 6.86 43.31 0.30 -0.35 16 3 N -0.46 -22.73 9.39 -170.97 -1.61 -24.33 16 4 C -0.01 -0.58 6.74 41.95 0.28 -0.30 16 5 C -0.05 -2.22 5.89 -19.94 -0.12 -2.34 16 6 C 0.08 2.81 10.59 85.05 0.90 3.71 16 7 N -0.49 -16.60 10.35 -194.69 -2.01 -18.61 16 8 C 0.08 2.11 10.85 84.70 0.92 3.02 16 9 C -0.13 -3.72 5.40 -19.81 -0.11 -3.83 16 10 C 0.11 2.36 6.93 85.56 0.59 2.95 16 11 N -0.86 -16.51 9.61 -190.01 -1.83 -18.34 16 12 C -0.06 -2.27 9.37 22.73 0.21 -2.05 16 13 C -0.13 -6.20 9.39 22.29 0.21 -5.99 16 14 C -0.16 -8.40 8.73 22.64 0.20 -8.20 16 15 C 0.05 2.37 5.58 -21.17 -0.12 2.25 16 16 C -0.45 -22.22 8.14 23.39 0.19 -22.03 16 17 H 0.10 4.46 6.86 -2.91 -0.02 4.44 16 18 C 0.03 1.56 5.18 85.28 0.44 2.00 16 19 N -0.81 -39.06 10.95 21.84 0.24 -38.82 16 20 Si 0.99 34.40 29.59 68.60 2.03 36.43 16 21 H -0.26 -8.67 7.11 99.48 0.71 -7.97 16 22 H -0.27 -8.95 7.11 99.48 0.71 -8.24 16 23 H -0.25 -8.61 7.11 99.48 0.71 -7.91 16 24 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.07 2.77 6.76 -2.39 -0.02 2.76 16 27 H 0.16 5.48 6.21 -2.91 -0.02 5.46 16 28 H 0.18 3.50 8.06 -2.91 -0.02 3.48 16 29 H 0.08 1.67 8.10 -2.38 -0.02 1.65 16 30 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 31 H 0.36 4.89 9.08 -89.69 -0.81 4.08 16 32 H 0.35 6.05 8.98 -89.70 -0.81 5.24 16 33 H 0.13 4.89 7.62 -2.91 -0.02 4.86 16 34 H 0.12 5.11 6.21 -2.91 -0.02 5.09 16 35 H 0.12 6.14 6.26 -2.91 -0.02 6.12 16 36 H 0.30 12.83 8.29 -92.71 -0.77 12.06 16 Total: -1.00 -60.99 307.25 0.92 -60.07 By element: Atomic # 1 Polarization: 37.18 SS G_CDS: -0.48 Total: 36.70 kcal Atomic # 6 Polarization: -37.68 SS G_CDS: 4.58 Total: -33.10 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -5.21 Total: -100.10 kcal Atomic # 14 Polarization: 34.40 SS G_CDS: 2.03 Total: 36.43 kcal Total: -60.99 0.92 -60.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239791246.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.734 kcal (2) G-P(sol) polarization free energy of solvation -60.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds