Wall clock time and date at job start Mon Mar 30 2020 00:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35612 * 116.99834 * 2 1 4 4 N 1.32155 * 119.76951 * 0.02562 * 3 2 1 5 5 C 1.31964 * 121.77351 * 179.97438 * 4 3 2 6 6 C 1.38190 * 121.09957 * 0.02562 * 5 4 3 7 7 C 1.38547 * 119.41406 * 359.97438 * 6 5 4 8 8 C 1.39568 * 118.37089 * 359.97438 * 7 6 5 9 9 C 1.48316 * 120.55914 * 179.97438 * 8 7 6 10 10 C 1.39391 * 120.12442 * 130.00253 * 9 8 7 11 11 C 1.37984 * 119.87500 * 179.97438 * 10 9 8 12 12 C 1.38344 * 120.12638 * 0.02562 * 11 10 9 13 13 C 1.38305 * 120.25306 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.94448 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47201 * 89.99290 * 14 13 12 16 16 H 1.08003 * 120.00306 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00298 * 180.02562 * 15 14 13 18 18 N 1.31508 * 119.99658 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00151 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46749 * 90.00148 * 19 17 15 21 21 H 1.48500 * 109.46858 * 210.00171 * 19 17 15 22 22 H 1.48506 * 109.46925 * 330.00440 * 19 17 15 23 23 C 1.38039 * 120.12165 * 359.76504 * 13 12 11 24 24 H 1.09005 * 109.47027 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47083 * 299.99785 * 1 2 3 26 26 H 1.08993 * 109.47184 * 59.99636 * 1 2 3 27 27 H 1.07996 * 119.44833 * 179.97438 * 5 4 3 28 28 H 1.08002 * 120.29049 * 179.97438 * 6 5 4 29 29 H 1.07993 * 120.81530 * 180.02562 * 7 6 5 30 30 H 1.07998 * 120.06048 * 0.02818 * 10 9 8 31 31 H 1.08003 * 119.93702 * 180.02562 * 11 10 9 32 32 H 1.08005 * 119.87790 * 179.97438 * 12 11 10 33 33 H 1.08991 * 109.47669 * 210.00177 * 14 13 12 34 34 H 1.09002 * 109.46680 * 330.00307 * 14 13 12 35 35 H 0.97002 * 119.99965 * 179.97438 * 18 17 15 36 36 H 1.07995 * 120.06360 * 180.28186 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 7 1.3204 2.3137 0.0005 5 6 1.8780 3.5098 0.0010 6 6 3.2520 3.6568 0.0005 7 6 4.0570 2.5291 0.0000 8 6 3.4427 1.2759 0.0006 9 6 4.2577 0.0367 -0.0005 10 6 3.9956 -0.9738 0.9232 11 6 4.7567 -2.1248 0.9172 12 6 5.7786 -2.2767 -0.0029 13 6 6.0432 -1.2775 -0.9217 14 6 7.1576 -1.4506 -1.9213 15 6 6.6183 -2.1060 -3.1665 16 1 5.5729 -2.3704 -3.2282 17 6 7.4594 -2.3682 -4.2271 18 7 8.7323 -2.0467 -4.1519 19 14 6.7906 -3.1799 -5.7709 20 1 6.3271 -2.1348 -6.7186 21 1 7.8613 -3.9872 -6.4091 22 1 5.6519 -4.0631 -5.4122 23 6 5.2848 -0.1241 -0.9285 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.2500 4.3884 0.0010 28 1 3.6945 4.6420 0.0006 29 1 5.1333 2.6177 0.0000 30 1 3.1978 -0.8564 1.6416 31 1 4.5542 -2.9085 1.6322 32 1 6.3720 -3.1791 -0.0037 33 1 7.5731 -0.4754 -2.1747 34 1 7.9383 -2.0772 -1.4900 35 1 9.3241 -2.2315 -4.8979 36 1 5.4893 0.6536 -1.6494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239855370.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:19 Heat of formation + Delta-G solvation = 12.120222 kcal Electronic energy + Delta-G solvation = -19331.295129 eV Core-core repulsion = 16359.281368 eV Total energy + Delta-G solvation = -2972.013761 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.65530 -38.44712 -37.77469 -33.81810 -32.88329 -31.42467 -30.92695 -28.99479 -27.23479 -26.95969 -23.86557 -23.38170 -22.74736 -21.19190 -20.01595 -18.31607 -16.87778 -16.40143 -16.14808 -15.93448 -15.38742 -14.80982 -14.44016 -14.39642 -14.08054 -13.45427 -13.37364 -13.04845 -12.57042 -12.41729 -12.20225 -11.84858 -11.62605 -11.29412 -11.22197 -11.04079 -10.76108 -10.52774 -10.32704 -9.94601 -9.72222 -9.49614 -9.39737 -8.68328 -8.42152 -7.96373 -7.66379 -6.04157 -4.07610 0.96303 1.29612 2.07986 2.18152 3.13287 3.30902 3.36999 3.41795 3.77583 4.26982 4.38127 4.54781 4.87163 4.90208 5.07008 5.20631 5.27285 5.30563 5.31596 5.50935 5.56558 5.59123 5.66736 5.91914 5.99951 6.12861 6.15875 6.34991 6.41834 6.59661 6.79583 7.08788 7.16734 7.20550 7.28550 7.50351 7.71760 7.83436 7.85115 7.92146 8.32591 8.97777 9.56284 11.05781 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019673 B = 0.004668 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.909229 B = 5996.722212 C = 6095.764769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.294 6.294 3 C 0.326 3.674 4 N -0.542 5.542 5 C 0.127 3.873 6 C -0.208 4.208 7 C -0.036 4.036 8 C -0.095 4.095 9 C -0.053 4.053 10 C -0.116 4.116 11 C -0.125 4.125 12 C -0.117 4.117 13 C -0.036 4.036 14 C 0.048 3.952 15 C -0.511 4.511 16 H 0.057 0.943 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.105 4.105 24 H 0.094 0.906 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.156 0.844 28 H 0.137 0.863 29 H 0.144 0.856 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.028 0.972 34 H 0.029 0.971 35 H 0.262 0.738 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.622 8.525 10.515 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.200 6.200 3 C 0.147 3.853 4 N -0.266 5.266 5 C -0.028 4.028 6 C -0.229 4.229 7 C -0.061 4.061 8 C -0.098 4.098 9 C -0.053 4.053 10 C -0.135 4.135 11 C -0.143 4.143 12 C -0.135 4.135 13 C -0.036 4.036 14 C 0.011 3.989 15 C -0.549 4.549 16 H 0.075 0.925 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.123 4.123 24 H 0.113 0.887 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.173 0.827 28 H 0.155 0.845 29 H 0.161 0.839 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.275 8.157 10.414 18.740 hybrid contribution 0.270 -0.219 -0.992 1.051 sum -13.004 7.939 9.421 17.914 Atomic orbital electron populations 1.22843 0.77815 1.02853 1.02076 1.86363 1.22237 1.24067 1.87344 1.19873 0.88630 0.84693 0.92121 1.67263 1.40801 0.98780 1.19722 1.22347 0.92953 0.93476 0.94046 1.21904 0.94764 0.99693 1.06494 1.21611 1.00924 0.90310 0.93231 1.18912 0.90078 0.94617 1.06195 1.18349 0.96421 0.92739 0.97839 1.20807 0.99722 0.93706 0.99221 1.20942 0.96637 0.97220 0.99473 1.21167 0.97917 0.99061 0.95362 1.20598 0.96875 0.91790 0.94334 1.18352 0.90891 0.98011 0.91601 1.21072 0.95492 1.39463 0.98903 0.92473 1.24999 0.94823 0.95786 0.98657 1.69953 1.03785 1.47723 1.31908 0.86552 0.78659 0.79516 0.83100 1.20604 1.21135 1.19776 1.21077 0.95020 0.98546 0.97672 0.88721 0.92583 0.92473 0.82652 0.84524 0.83856 0.87206 0.86906 0.86393 0.95364 0.95240 0.92857 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.38 101.05 1.05 1.49 16 2 O -0.29 -4.52 8.86 -18.53 -0.16 -4.68 16 3 C 0.33 5.08 7.42 -16.76 -0.12 4.96 16 4 N -0.54 -7.57 9.21 -13.06 -0.12 -7.69 16 5 C 0.13 1.43 11.17 -17.51 -0.20 1.24 16 6 C -0.21 -2.26 10.09 -39.49 -0.40 -2.66 16 7 C -0.04 -0.47 9.68 -38.97 -0.38 -0.85 16 8 C -0.10 -1.51 5.49 -104.61 -0.57 -2.09 16 9 C -0.05 -0.94 5.29 -104.91 -0.56 -1.50 16 10 C -0.12 -1.98 8.80 -39.25 -0.35 -2.33 16 11 C -0.12 -2.13 10.03 -39.64 -0.40 -2.53 16 12 C -0.12 -2.31 9.69 -39.52 -0.38 -2.69 16 13 C -0.04 -0.79 5.06 -104.67 -0.53 -1.32 16 14 C 0.05 1.24 5.10 -29.04 -0.15 1.10 16 15 C -0.51 -14.44 9.09 -34.44 -0.31 -14.75 16 16 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 19 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.11 -2.11 9.19 -39.24 -0.36 -2.47 16 24 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 26 H 0.06 0.64 8.10 -51.93 -0.42 0.21 16 27 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 28 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 29 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.11 1.69 7.71 -52.49 -0.40 1.29 16 31 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 32 H 0.12 2.24 8.06 -52.48 -0.42 1.82 16 33 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.12 2.31 8.05 -52.49 -0.42 1.89 16 LS Contribution 316.80 15.07 4.77 4.77 Total: -1.00 -31.65 316.80 -8.13 -39.78 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.59 Total: -0.36 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -3.75 Total: -22.82 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.62 Total: -33.40 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.16 Total: -4.68 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.65 -8.13 -39.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239855370.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.899 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds