Wall clock time and date at job start Mon Mar 30 2020 00:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35612 * 116.99834 * 2 1 4 4 N 1.32155 * 119.76951 * 0.02562 * 3 2 1 5 5 C 1.31964 * 121.77351 * 179.97438 * 4 3 2 6 6 C 1.38190 * 121.09957 * 0.02562 * 5 4 3 7 7 C 1.38547 * 119.41406 * 359.97438 * 6 5 4 8 8 C 1.39568 * 118.37089 * 359.97438 * 7 6 5 9 9 C 1.48316 * 120.55914 * 179.97438 * 8 7 6 10 10 C 1.39391 * 120.12442 * 130.00253 * 9 8 7 11 11 C 1.37984 * 119.87500 * 179.97438 * 10 9 8 12 12 C 1.38344 * 120.12638 * 0.02562 * 11 10 9 13 13 C 1.38305 * 120.25306 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.94448 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47201 * 89.99290 * 14 13 12 16 16 H 1.08003 * 120.00306 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00298 * 180.02562 * 15 14 13 18 18 N 1.31508 * 119.99658 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00151 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46749 * 90.00148 * 19 17 15 21 21 H 1.48500 * 109.46858 * 210.00171 * 19 17 15 22 22 H 1.48506 * 109.46925 * 330.00440 * 19 17 15 23 23 C 1.38039 * 120.12165 * 359.76504 * 13 12 11 24 24 H 1.09005 * 109.47027 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47083 * 299.99785 * 1 2 3 26 26 H 1.08993 * 109.47184 * 59.99636 * 1 2 3 27 27 H 1.07996 * 119.44833 * 179.97438 * 5 4 3 28 28 H 1.08002 * 120.29049 * 179.97438 * 6 5 4 29 29 H 1.07993 * 120.81530 * 180.02562 * 7 6 5 30 30 H 1.07998 * 120.06048 * 0.02818 * 10 9 8 31 31 H 1.08003 * 119.93702 * 180.02562 * 11 10 9 32 32 H 1.08005 * 119.87790 * 179.97438 * 12 11 10 33 33 H 1.08991 * 109.47669 * 210.00177 * 14 13 12 34 34 H 1.09002 * 109.46680 * 330.00307 * 14 13 12 35 35 H 0.97002 * 119.99965 * 179.97438 * 18 17 15 36 36 H 1.07995 * 120.06360 * 180.28186 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 7 1.3204 2.3137 0.0005 5 6 1.8780 3.5098 0.0010 6 6 3.2520 3.6568 0.0005 7 6 4.0570 2.5291 0.0000 8 6 3.4427 1.2759 0.0006 9 6 4.2577 0.0367 -0.0005 10 6 3.9956 -0.9738 0.9232 11 6 4.7567 -2.1248 0.9172 12 6 5.7786 -2.2767 -0.0029 13 6 6.0432 -1.2775 -0.9217 14 6 7.1576 -1.4506 -1.9213 15 6 6.6183 -2.1060 -3.1665 16 1 5.5729 -2.3704 -3.2282 17 6 7.4594 -2.3682 -4.2271 18 7 8.7323 -2.0467 -4.1519 19 14 6.7906 -3.1799 -5.7709 20 1 6.3271 -2.1348 -6.7186 21 1 7.8613 -3.9872 -6.4091 22 1 5.6519 -4.0631 -5.4122 23 6 5.2848 -0.1241 -0.9285 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.2500 4.3884 0.0010 28 1 3.6945 4.6420 0.0006 29 1 5.1333 2.6177 0.0000 30 1 3.1978 -0.8564 1.6416 31 1 4.5542 -2.9085 1.6322 32 1 6.3720 -3.1791 -0.0037 33 1 7.5731 -0.4754 -2.1747 34 1 7.9383 -2.0772 -1.4900 35 1 9.3241 -2.2315 -4.8979 36 1 5.4893 0.6536 -1.6494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239855370.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:18 Heat of formation + Delta-G solvation = -6.550984 kcal Electronic energy + Delta-G solvation = -19332.104773 eV Core-core repulsion = 16359.281368 eV Total energy + Delta-G solvation = -2972.823405 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.70186 -39.89508 -38.78488 -35.62961 -34.33588 -32.95551 -32.18863 -30.27784 -28.86006 -28.12569 -25.29048 -25.00663 -23.85952 -22.57256 -21.52120 -19.32108 -18.53566 -17.89265 -17.57333 -16.98817 -16.65597 -16.47001 -15.91123 -15.72544 -15.08379 -14.71886 -14.55169 -14.37240 -14.16131 -14.03453 -13.40626 -13.30044 -13.20629 -12.83762 -12.69163 -12.57954 -12.34348 -12.14398 -11.88426 -11.57809 -11.44593 -10.93085 -10.66519 -10.60767 -9.86202 -9.48379 -9.01109 -8.21802 -6.34730 -0.13476 0.30606 0.64372 0.74457 1.37965 1.38679 1.50535 2.16076 2.38357 2.75440 3.02945 3.08941 3.32750 3.73989 3.98552 4.08684 4.14041 4.23986 4.37913 4.38640 4.44155 4.46558 4.54917 4.67981 4.75375 4.80426 5.00237 5.05491 5.20289 5.27761 5.35843 5.38399 5.50289 5.65087 5.67367 5.75573 6.06228 6.11007 6.24430 6.29454 6.77343 6.84340 7.33677 8.87608 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019673 B = 0.004668 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.909229 B = 5996.722212 C = 6095.764769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.317 6.317 3 C 0.312 3.688 4 N -0.552 5.552 5 C 0.131 3.869 6 C -0.197 4.197 7 C -0.041 4.041 8 C -0.130 4.130 9 C -0.042 4.042 10 C -0.113 4.113 11 C -0.112 4.112 12 C -0.133 4.133 13 C -0.064 4.064 14 C 0.058 3.942 15 C -0.530 4.530 16 H 0.050 0.950 17 C 0.007 3.993 18 N -0.928 5.928 19 Si 0.963 3.037 20 H -0.272 1.272 21 H -0.276 1.276 22 H -0.267 1.267 23 C -0.119 4.119 24 H 0.115 0.885 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.196 0.804 28 H 0.174 0.826 29 H 0.149 0.851 30 H 0.132 0.868 31 H 0.149 0.851 32 H 0.117 0.883 33 H 0.004 0.996 34 H 0.006 0.994 35 H 0.266 0.734 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.894 9.501 11.099 20.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.224 6.224 3 C 0.134 3.866 4 N -0.276 5.276 5 C -0.024 4.024 6 C -0.217 4.217 7 C -0.066 4.066 8 C -0.133 4.133 9 C -0.043 4.043 10 C -0.131 4.131 11 C -0.130 4.130 12 C -0.151 4.151 13 C -0.064 4.064 14 C 0.021 3.979 15 C -0.567 4.567 16 H 0.068 0.932 17 C -0.191 4.191 18 N -0.568 5.568 19 Si 0.787 3.213 20 H -0.198 1.198 21 H -0.201 1.201 22 H -0.192 1.192 23 C -0.138 4.138 24 H 0.133 0.867 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.213 0.787 28 H 0.192 0.808 29 H 0.167 0.833 30 H 0.150 0.850 31 H 0.167 0.833 32 H 0.135 0.865 33 H 0.022 0.978 34 H 0.025 0.975 35 H 0.075 0.925 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.555 9.133 11.008 21.131 hybrid contribution 0.894 -0.372 -1.095 1.462 sum -14.660 8.760 9.913 19.747 Atomic orbital electron populations 1.23044 0.76059 1.04364 1.02319 1.86310 1.24137 1.24491 1.87465 1.19950 0.88574 0.85315 0.92763 1.67358 1.40876 0.99217 1.20151 1.23125 0.93843 0.93760 0.91660 1.22298 0.94518 1.00451 1.04435 1.21856 1.01677 0.90360 0.92697 1.18937 0.90399 0.94590 1.09400 1.18529 0.95251 0.93965 0.96556 1.21134 0.99744 0.93218 0.98957 1.21257 0.94887 0.98061 0.98757 1.21214 0.99260 0.98598 0.96008 1.20320 0.97047 0.93888 0.95101 1.18086 0.91745 0.95832 0.92198 1.21356 0.95270 1.39862 1.00254 0.93175 1.25881 0.95026 0.96226 1.01969 1.70068 1.05020 1.48635 1.33095 0.85483 0.78244 0.78668 0.78911 1.19773 1.20135 1.19188 1.20995 0.96224 0.97868 0.98666 0.86650 0.91767 0.92722 0.78700 0.80833 0.83321 0.85025 0.83286 0.86501 0.97805 0.97529 0.92495 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.38 113.37 1.18 1.94 16 2 O -0.32 -9.38 8.86 -89.23 -0.79 -10.17 16 3 C 0.31 9.34 7.42 85.06 0.63 9.97 16 4 N -0.55 -14.15 9.21 -308.18 -2.84 -16.99 16 5 C 0.13 2.50 11.17 84.66 0.95 3.44 16 6 C -0.20 -3.64 10.09 22.33 0.23 -3.41 16 7 C -0.04 -1.02 9.68 22.66 0.22 -0.80 16 8 C -0.13 -4.05 5.49 -19.85 -0.11 -4.15 16 9 C -0.04 -1.51 5.29 -20.05 -0.11 -1.62 16 10 C -0.11 -3.69 8.80 22.49 0.20 -3.49 16 11 C -0.11 -3.68 10.03 22.23 0.22 -3.46 16 12 C -0.13 -5.34 9.69 22.31 0.22 -5.13 16 13 C -0.06 -2.93 5.06 -19.90 -0.10 -3.03 16 14 C 0.06 3.20 5.10 29.10 0.15 3.35 16 15 C -0.53 -31.09 9.09 25.60 0.23 -30.86 16 16 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 17 C 0.01 0.42 5.46 84.66 0.46 0.89 16 18 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 19 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 C -0.12 -4.98 9.19 22.49 0.21 -4.77 16 24 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 25 H 0.06 1.21 8.11 -2.39 -0.02 1.19 16 26 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 27 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 28 H 0.17 1.89 8.06 -2.91 -0.02 1.86 16 29 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 30 H 0.13 3.75 7.71 -2.91 -0.02 3.73 16 31 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 32 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 33 H 0.00 0.21 8.08 -2.39 -0.02 0.19 16 34 H 0.01 0.37 8.08 -2.39 -0.02 0.35 16 35 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 36 H 0.11 4.55 8.05 -2.91 -0.02 4.52 16 Total: -1.00 -70.65 316.80 4.32 -66.33 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 1.07 Total: 10.97 kcal Atomic # 6 Polarization: -45.69 SS G_CDS: 4.57 Total: -41.12 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -2.55 Total: -73.15 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.79 Total: -10.17 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -70.65 4.32 -66.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239855370.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.781 kcal (2) G-P(sol) polarization free energy of solvation -70.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds