Wall clock time and date at job start Mon Mar 30 2020 00:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35916 * 117.00157 * 2 1 4 4 C 1.38832 * 120.41269 * 359.97438 * 3 2 1 5 5 N 1.31845 * 120.94487 * 179.97438 * 4 3 2 6 6 C 1.31736 * 121.91176 * 0.02562 * 5 4 3 7 7 C 1.39315 * 120.71725 * 0.02562 * 6 5 4 8 8 C 1.48402 * 120.50526 * 179.97438 * 7 6 5 9 9 C 1.39342 * 120.11891 * 0.02562 * 8 7 6 10 10 C 1.38016 * 119.87593 * 180.02562 * 9 8 7 11 11 C 1.38325 * 120.12397 * 0.02562 * 10 9 8 12 12 C 1.50697 * 119.88110 * 179.70509 * 11 10 9 13 13 C 1.50702 * 109.47115 * 90.00033 * 12 11 10 14 14 H 1.07995 * 120.00214 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99931 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00037 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99989 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.46941 * 90.00590 * 17 15 13 19 19 H 1.48496 * 109.47135 * 210.00351 * 17 15 13 20 20 H 1.48497 * 109.46952 * 330.00603 * 17 15 13 21 21 C 1.38328 * 120.24099 * 359.97438 * 11 10 9 22 22 C 1.38017 * 120.12010 * 359.97438 * 21 11 10 23 23 C 1.38885 * 120.41848 * 180.27500 * 3 2 1 24 24 H 1.08997 * 109.47096 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46986 * 300.00722 * 1 2 3 26 26 H 1.09001 * 109.46558 * 60.00441 * 1 2 3 27 27 H 1.07995 * 119.52764 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.63509 * 179.97438 * 6 5 4 29 29 H 1.08000 * 120.06258 * 0.03777 * 9 8 7 30 30 H 1.08006 * 119.93964 * 179.97438 * 10 9 8 31 31 H 1.08999 * 109.47437 * 210.00234 * 12 11 10 32 32 H 1.09006 * 109.47091 * 330.00429 * 12 11 10 33 33 H 0.96996 * 120.00160 * 179.97438 * 16 15 13 34 34 H 1.08001 * 119.93740 * 180.02562 * 21 11 10 35 35 H 1.07994 * 120.06242 * 180.02562 * 22 21 11 36 36 H 1.08004 * 120.86580 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2984 2.3808 -0.0005 5 7 1.8861 3.5610 0.0000 6 6 3.1975 3.6860 0.0005 7 6 4.0195 2.5612 0.0000 8 6 5.4963 2.7074 0.0000 9 6 6.0734 3.9757 0.0011 10 6 7.4474 4.1059 0.0005 11 6 8.2513 2.9802 -0.0016 12 6 9.7509 3.1287 -0.0088 13 6 10.2575 3.1803 1.4095 14 1 9.5630 3.1128 2.2338 15 6 11.6076 3.3148 1.6549 16 7 12.0498 3.3593 2.8927 17 14 12.8089 3.4323 0.2292 18 1 12.9889 4.8567 -0.1503 19 1 14.1171 2.8593 0.6357 20 1 12.2756 2.6744 -0.9311 21 6 7.6838 1.7188 -0.0026 22 6 6.3109 1.5770 -0.0010 23 6 3.4325 1.2938 -0.0057 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 0.2200 2.3232 -0.0005 28 1 3.6401 4.6711 0.0005 29 1 5.4466 4.8553 0.0025 30 1 7.8957 5.0885 0.0009 31 1 10.1978 2.2781 -0.5235 32 1 10.0224 4.0495 -0.5253 33 1 12.9996 3.4536 3.0654 34 1 8.3161 0.8432 -0.0038 35 1 5.8688 0.5917 -0.0014 36 1 4.0408 0.4014 -0.0099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239930615.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:30 Heat of formation + Delta-G solvation = 15.323564 kcal Electronic energy + Delta-G solvation = -18727.700384 eV Core-core repulsion = 15755.825530 eV Total energy + Delta-G solvation = -2971.874853 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.80762 -39.02150 -37.99723 -34.16966 -32.68908 -31.55801 -30.54618 -30.05351 -27.92500 -27.09492 -24.13700 -23.69894 -21.94524 -21.62691 -20.15802 -18.31073 -17.08934 -16.84492 -16.80786 -16.12056 -15.83262 -14.75945 -14.67592 -14.21518 -14.03817 -13.86157 -13.51198 -13.33246 -12.72496 -12.58032 -12.47732 -12.16842 -12.12033 -11.77743 -11.69062 -11.44514 -10.75705 -10.43792 -10.32603 -10.06038 -9.75411 -9.53484 -9.39680 -8.71627 -8.63458 -8.49220 -7.62647 -6.12201 -4.12267 0.63389 1.17838 1.88466 2.14391 2.90264 3.25193 3.33442 3.35418 3.70186 4.31332 4.36939 4.38240 4.46657 4.67127 4.79256 4.80557 4.86608 5.02727 5.12156 5.19103 5.23044 5.31419 5.52076 5.74420 5.80120 5.82743 5.99750 6.18198 6.27517 6.41317 6.50723 6.84467 6.88064 6.93875 6.94029 6.99097 7.44712 7.47637 7.63894 7.83781 8.43296 8.92622 9.47384 11.00600 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.042235 B = 0.003329 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.792039 B = 8407.659627 C = 8676.405331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.313 6.313 3 C 0.081 3.919 4 C 0.001 3.999 5 N -0.446 5.446 6 C 0.062 3.938 7 C -0.026 4.026 8 C -0.090 4.090 9 C -0.099 4.099 10 C -0.122 4.122 11 C -0.013 4.013 12 C 0.011 3.989 13 C -0.515 4.515 14 H 0.074 0.926 15 C 0.070 3.930 16 N -0.898 5.898 17 Si 0.878 3.122 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.264 1.264 21 C -0.123 4.123 22 C -0.099 4.099 23 C -0.113 4.113 24 H 0.102 0.898 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.155 0.845 28 H 0.161 0.839 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.030 0.970 32 H 0.026 0.974 33 H 0.265 0.735 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.462 -4.163 -7.824 22.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.225 6.225 3 C 0.034 3.966 4 C -0.157 4.157 5 N -0.154 5.154 6 C -0.096 4.096 7 C -0.028 4.028 8 C -0.090 4.090 9 C -0.116 4.116 10 C -0.140 4.140 11 C -0.013 4.013 12 C -0.026 4.026 13 C -0.553 4.553 14 H 0.092 0.908 15 C -0.132 4.132 16 N -0.536 5.536 17 Si 0.705 3.295 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.189 1.189 21 C -0.141 4.141 22 C -0.117 4.117 23 C -0.139 4.139 24 H 0.120 0.880 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.172 0.828 28 H 0.178 0.822 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -20.758 -3.619 -7.709 22.437 hybrid contribution 1.001 -0.601 -0.473 1.260 sum -19.756 -4.220 -8.182 21.796 Atomic orbital electron populations 1.23101 0.78130 1.04237 1.01542 1.86084 1.21539 1.26186 1.88679 1.19945 0.92948 0.85642 0.98052 1.22825 1.00304 0.87305 1.05255 1.67463 1.12262 1.26143 1.09560 1.22802 0.88254 0.98813 0.99779 1.19684 0.93938 0.92761 0.96463 1.18333 0.89634 0.94145 1.06926 1.21093 0.95103 0.95770 0.99683 1.21037 0.92609 0.99149 1.01254 1.20461 0.97845 0.92248 0.90718 1.18878 0.87485 0.97489 0.98785 1.20898 0.93079 1.51046 0.90306 0.90758 1.25002 0.98200 0.94438 0.95555 1.69896 1.14770 1.50042 1.18937 0.86801 0.80687 0.78825 0.83184 1.20106 1.21206 1.18903 1.21030 0.93958 0.97784 1.01296 1.21105 0.93673 0.97303 0.99660 1.20971 0.91496 0.98524 1.02937 0.87983 0.92413 0.92461 0.82821 0.82182 0.86254 0.85760 0.95201 0.95608 0.92514 0.85846 0.86466 0.83774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.82 101.05 0.99 1.15 16 2 O -0.31 -3.31 10.51 -19.47 -0.20 -3.51 16 3 C 0.08 0.98 6.70 -39.12 -0.26 0.71 16 4 C 0.00 0.01 10.21 -17.33 -0.18 -0.17 16 5 N -0.45 -5.97 10.34 -12.85 -0.13 -6.10 16 6 C 0.06 0.82 10.60 -17.19 -0.18 0.64 16 7 C -0.03 -0.37 5.89 -104.77 -0.62 -0.98 16 8 C -0.09 -1.38 5.88 -104.89 -0.62 -1.99 16 9 C -0.10 -1.53 9.44 -39.25 -0.37 -1.90 16 10 C -0.12 -2.20 9.68 -39.63 -0.38 -2.58 16 11 C -0.01 -0.25 5.07 -104.56 -0.53 -0.79 16 12 C 0.01 0.25 4.17 -29.04 -0.12 0.13 16 13 C -0.52 -14.30 9.65 -34.44 -0.33 -14.63 16 14 H 0.07 2.27 7.98 -52.49 -0.42 1.85 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 17 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 21 C -0.12 -2.22 9.68 -39.63 -0.38 -2.61 16 22 C -0.10 -1.57 9.44 -39.25 -0.37 -1.94 16 23 C -0.11 -1.47 9.48 -38.81 -0.37 -1.84 16 24 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.30 7.67 -51.93 -0.40 -0.10 16 26 H 0.06 0.29 7.67 -51.93 -0.40 -0.11 16 27 H 0.15 1.32 6.30 -52.49 -0.33 0.99 16 28 H 0.16 1.83 6.22 -52.49 -0.33 1.51 16 29 H 0.12 1.49 6.23 -52.49 -0.33 1.17 16 30 H 0.12 2.12 8.06 -52.48 -0.42 1.69 16 31 H 0.03 0.68 7.14 -51.93 -0.37 0.31 16 32 H 0.03 0.58 7.51 -51.93 -0.39 0.19 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.12 1.54 6.27 -52.49 -0.33 1.21 16 36 H 0.14 1.70 6.32 -52.48 -0.33 1.37 16 LS Contribution 306.12 15.07 4.61 4.61 Total: -1.00 -31.71 306.12 -7.50 -39.20 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -4.06 Total: 0.84 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -3.82 Total: -24.91 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 0.64 Total: -32.50 kcal Atomic # 8 Polarization: -3.31 SS G_CDS: -0.20 Total: -3.51 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.71 -7.50 -39.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239930615.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.527 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds