Wall clock time and date at job start Mon Mar 30 2020 00:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35916 * 117.00157 * 2 1 4 4 C 1.38832 * 120.41269 * 359.97438 * 3 2 1 5 5 N 1.31845 * 120.94487 * 179.97438 * 4 3 2 6 6 C 1.31736 * 121.91176 * 0.02562 * 5 4 3 7 7 C 1.39315 * 120.71725 * 0.02562 * 6 5 4 8 8 C 1.48402 * 120.50526 * 179.97438 * 7 6 5 9 9 C 1.39342 * 120.11891 * 0.02562 * 8 7 6 10 10 C 1.38016 * 119.87593 * 180.02562 * 9 8 7 11 11 C 1.38325 * 120.12397 * 0.02562 * 10 9 8 12 12 C 1.50697 * 119.88110 * 179.70509 * 11 10 9 13 13 C 1.50702 * 109.47115 * 90.00033 * 12 11 10 14 14 H 1.07995 * 120.00214 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99931 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00037 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99989 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.46941 * 90.00590 * 17 15 13 19 19 H 1.48496 * 109.47135 * 210.00351 * 17 15 13 20 20 H 1.48497 * 109.46952 * 330.00603 * 17 15 13 21 21 C 1.38328 * 120.24099 * 359.97438 * 11 10 9 22 22 C 1.38017 * 120.12010 * 359.97438 * 21 11 10 23 23 C 1.38885 * 120.41848 * 180.27500 * 3 2 1 24 24 H 1.08997 * 109.47096 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46986 * 300.00722 * 1 2 3 26 26 H 1.09001 * 109.46558 * 60.00441 * 1 2 3 27 27 H 1.07995 * 119.52764 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.63509 * 179.97438 * 6 5 4 29 29 H 1.08000 * 120.06258 * 0.03777 * 9 8 7 30 30 H 1.08006 * 119.93964 * 179.97438 * 10 9 8 31 31 H 1.08999 * 109.47437 * 210.00234 * 12 11 10 32 32 H 1.09006 * 109.47091 * 330.00429 * 12 11 10 33 33 H 0.96996 * 120.00160 * 179.97438 * 16 15 13 34 34 H 1.08001 * 119.93740 * 180.02562 * 21 11 10 35 35 H 1.07994 * 120.06242 * 180.02562 * 22 21 11 36 36 H 1.08004 * 120.86580 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2984 2.3808 -0.0005 5 7 1.8861 3.5610 0.0000 6 6 3.1975 3.6860 0.0005 7 6 4.0195 2.5612 0.0000 8 6 5.4963 2.7074 0.0000 9 6 6.0734 3.9757 0.0011 10 6 7.4474 4.1059 0.0005 11 6 8.2513 2.9802 -0.0016 12 6 9.7509 3.1287 -0.0088 13 6 10.2575 3.1803 1.4095 14 1 9.5630 3.1128 2.2338 15 6 11.6076 3.3148 1.6549 16 7 12.0498 3.3593 2.8927 17 14 12.8089 3.4323 0.2292 18 1 12.9889 4.8567 -0.1503 19 1 14.1171 2.8593 0.6357 20 1 12.2756 2.6744 -0.9311 21 6 7.6838 1.7188 -0.0026 22 6 6.3109 1.5770 -0.0010 23 6 3.4325 1.2938 -0.0057 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 0.2200 2.3232 -0.0005 28 1 3.6401 4.6711 0.0005 29 1 5.4466 4.8553 0.0025 30 1 7.8957 5.0885 0.0009 31 1 10.1978 2.2781 -0.5235 32 1 10.0224 4.0495 -0.5253 33 1 12.9996 3.4536 3.0654 34 1 8.3161 0.8432 -0.0038 35 1 5.8688 0.5917 -0.0014 36 1 4.0408 0.4014 -0.0099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239930615.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:30 Heat of formation + Delta-G solvation = -3.528273 kcal Electronic energy + Delta-G solvation = -18728.517861 eV Core-core repulsion = 15755.825530 eV Total energy + Delta-G solvation = -2972.692330 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.73720 -40.18914 -38.94829 -35.72961 -34.36473 -32.77398 -31.90988 -31.28878 -28.97701 -28.18433 -25.38552 -24.97667 -23.33647 -22.83573 -21.52652 -19.20908 -18.97328 -17.99287 -17.79019 -17.07129 -16.81695 -16.33650 -15.85418 -15.79667 -15.05373 -14.82553 -14.76704 -14.61866 -14.24691 -13.84747 -13.83299 -13.51052 -13.28940 -13.04437 -12.73567 -12.45591 -12.41511 -12.06446 -11.76906 -11.73838 -11.55427 -10.95787 -10.78965 -10.50813 -9.80054 -9.65427 -8.90975 -8.30066 -6.35666 -0.43730 0.22808 0.56724 0.90929 1.37442 1.39141 1.50955 2.18739 2.35459 2.65474 3.04382 3.10615 3.41248 3.58508 3.68138 3.85738 3.96763 4.13240 4.14615 4.29275 4.36990 4.40331 4.43119 4.63422 4.66347 4.77106 4.90943 4.97002 4.99432 5.09090 5.13804 5.30608 5.40942 5.55705 5.60092 5.63456 5.96824 6.10004 6.20895 6.27065 6.71038 6.88516 7.28010 8.86468 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.042235 B = 0.003329 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.792039 B = 8407.659627 C = 8676.405331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.326 6.326 3 C 0.081 3.919 4 C 0.007 3.993 5 N -0.463 5.463 6 C 0.057 3.943 7 C -0.043 4.043 8 C -0.079 4.079 9 C -0.097 4.097 10 C -0.133 4.133 11 C -0.052 4.052 12 C 0.017 3.983 13 C -0.520 4.520 14 H 0.027 0.973 15 C 0.007 3.993 16 N -0.950 5.950 17 Si 0.951 3.049 18 H -0.264 1.264 19 H -0.284 1.284 20 H -0.244 1.244 21 C -0.134 4.134 22 C -0.101 4.101 23 C -0.121 4.121 24 H 0.123 0.877 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.185 0.815 28 H 0.174 0.826 29 H 0.151 0.849 30 H 0.126 0.874 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.268 0.732 34 H 0.123 0.877 35 H 0.143 0.857 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.674 -4.501 -9.581 25.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.238 6.238 3 C 0.033 3.967 4 C -0.151 4.151 5 N -0.171 5.171 6 C -0.100 4.100 7 C -0.045 4.045 8 C -0.080 4.080 9 C -0.115 4.115 10 C -0.151 4.151 11 C -0.052 4.052 12 C -0.020 4.020 13 C -0.558 4.558 14 H 0.046 0.954 15 C -0.190 4.190 16 N -0.590 5.590 17 Si 0.774 3.226 18 H -0.189 1.189 19 H -0.210 1.210 20 H -0.168 1.168 21 C -0.152 4.152 22 C -0.118 4.118 23 C -0.147 4.147 24 H 0.141 0.859 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.201 0.799 28 H 0.191 0.809 29 H 0.168 0.832 30 H 0.144 0.856 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.141 0.859 35 H 0.161 0.839 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -22.996 -3.961 -9.479 25.186 hybrid contribution 1.377 -0.581 0.145 1.502 sum -21.618 -4.542 -9.333 23.981 Atomic orbital electron populations 1.23462 0.75768 1.06147 1.02716 1.86082 1.23970 1.25434 1.88332 1.19976 0.92738 0.86442 0.97511 1.23333 1.01758 0.86672 1.03302 1.67535 1.12232 1.27021 1.10345 1.23022 0.88416 0.99253 0.99358 1.19578 0.92872 0.93582 0.98489 1.18575 0.90729 0.93919 1.04761 1.21375 0.94328 0.97194 0.98574 1.21143 0.93734 0.98639 1.01543 1.20335 0.96417 0.93960 0.94445 1.18711 0.89937 0.97731 0.95604 1.21150 0.92629 1.50304 0.91737 0.95423 1.26000 1.00412 0.94006 0.98567 1.70060 1.15401 1.51906 1.21646 0.85640 0.77622 0.79564 0.79753 1.18920 1.20973 1.16779 1.21112 0.95223 0.97104 1.01759 1.21344 0.92702 0.98890 0.98893 1.21156 0.92453 0.98490 1.02561 0.85912 0.91296 0.91127 0.79863 0.80890 0.83186 0.85556 0.94901 0.94886 0.92341 0.85876 0.83914 0.83073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.82 113.37 1.11 1.23 16 2 O -0.33 -6.00 10.51 -92.60 -0.97 -6.97 16 3 C 0.08 1.74 6.70 22.57 0.15 1.89 16 4 C 0.01 0.14 10.21 84.83 0.87 1.01 16 5 N -0.46 -11.23 10.34 -194.57 -2.01 -13.25 16 6 C 0.06 1.39 10.60 84.97 0.90 2.29 16 7 C -0.04 -1.12 5.89 -19.96 -0.12 -1.23 16 8 C -0.08 -2.32 5.88 -20.04 -0.12 -2.44 16 9 C -0.10 -2.90 9.44 22.48 0.21 -2.68 16 10 C -0.13 -4.77 9.68 22.24 0.22 -4.55 16 11 C -0.05 -2.11 5.07 -19.82 -0.10 -2.21 16 12 C 0.02 0.81 4.17 29.10 0.12 0.93 16 13 C -0.52 -30.00 9.65 25.60 0.25 -29.75 16 14 H 0.03 1.79 7.98 -2.91 -0.02 1.77 16 15 C 0.01 0.41 5.47 84.65 0.46 0.88 16 16 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 17 Si 0.95 43.47 27.47 68.60 1.88 45.35 16 18 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.24 -10.28 6.54 99.48 0.65 -9.63 16 21 C -0.13 -4.90 9.68 22.24 0.22 -4.68 16 22 C -0.10 -3.08 9.44 22.48 0.21 -2.87 16 23 C -0.12 -2.88 9.48 22.77 0.22 -2.67 16 24 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.07 0.48 7.67 -2.39 -0.02 0.46 16 26 H 0.07 0.46 7.67 -2.39 -0.02 0.44 16 27 H 0.18 2.44 6.30 -2.91 -0.02 2.42 16 28 H 0.17 3.55 6.22 -2.91 -0.02 3.54 16 29 H 0.15 3.43 6.23 -2.91 -0.02 3.42 16 30 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 31 H 0.03 1.49 7.14 -2.39 -0.02 1.48 16 32 H 0.03 1.47 7.51 -2.38 -0.02 1.46 16 33 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 34 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 35 H 0.14 3.53 6.27 -2.91 -0.02 3.51 16 36 H 0.15 3.27 6.32 -2.91 -0.02 3.25 16 Total: -1.00 -70.57 306.12 4.84 -65.73 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 1.04 Total: 13.21 kcal Atomic # 6 Polarization: -49.46 SS G_CDS: 4.60 Total: -44.86 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -1.71 Total: -72.46 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.97 Total: -6.97 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.35 kcal Total: -70.57 4.84 -65.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239930615.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.202 kcal (2) G-P(sol) polarization free energy of solvation -70.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds