Wall clock time and date at job start Mon Mar 30 2020 00:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00346 * 2 1 4 4 C 1.50700 * 109.47194 * 179.97438 * 3 2 1 5 5 C 1.38337 * 119.93576 * 90.00189 * 4 3 2 6 6 C 1.38303 * 120.24569 * 180.02562 * 5 4 3 7 7 C 1.38043 * 120.12190 * 0.02562 * 6 5 4 8 8 C 1.39332 * 119.87436 * 359.97438 * 7 6 5 9 9 C 1.48366 * 120.11990 * 180.02562 * 8 7 6 10 10 C 1.38898 * 119.61510 * 4.71905 * 9 8 7 11 11 C 1.40845 * 118.76103 * 180.27888 * 10 9 8 12 12 C 1.41528 * 120.98198 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00494 * 23.17115 * 12 11 10 14 14 C 1.40050 * 119.99778 * 203.17286 * 12 11 10 15 15 N 1.30735 * 120.00008 * 17.27454 * 14 12 11 16 16 Si 1.86800 * 120.00009 * 197.27898 * 14 12 11 17 17 H 1.48495 * 109.47509 * 94.67645 * 16 14 12 18 18 H 1.48506 * 109.46844 * 214.67399 * 16 14 12 19 19 H 1.48499 * 109.47089 * 334.67221 * 16 14 12 20 20 C 1.41135 * 118.02893 * 0.02562 * 11 10 9 21 21 C 1.37740 * 119.07147 * 0.02562 * 20 11 10 22 22 N 1.31924 * 121.15734 * 359.97438 * 21 20 11 23 23 C 1.37995 * 119.93688 * 270.28070 * 4 3 2 24 24 H 1.08996 * 109.47401 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46753 * 299.99917 * 1 2 3 26 26 H 1.09002 * 109.47120 * 59.99665 * 1 2 3 27 27 H 1.09000 * 109.46882 * 59.99952 * 3 2 1 28 28 H 1.08999 * 109.47222 * 300.00174 * 3 2 1 29 29 H 1.07999 * 119.88290 * 359.97407 * 5 4 3 30 30 H 1.07998 * 119.94132 * 179.97438 * 6 5 4 31 31 H 1.08001 * 120.05981 * 179.97438 * 7 6 5 32 32 H 1.08003 * 120.61332 * 0.25650 * 10 9 8 33 33 H 0.97004 * 120.00027 * 180.02562 * 15 14 12 34 34 H 1.07999 * 120.46437 * 180.02562 * 20 11 10 35 35 H 1.08003 * 119.42156 * 180.02562 * 21 20 11 36 36 H 1.08003 * 120.06247 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2013 1.1316 -1.1979 6 6 5.5800 1.0218 -1.2048 7 6 6.2764 0.9657 -0.0142 8 6 5.5879 1.0204 1.1958 9 6 6.3310 0.9611 2.4786 10 6 7.7199 0.9501 2.4674 11 6 8.4070 0.8875 3.6953 12 6 9.8215 0.8744 3.7387 13 1 10.3909 1.2767 2.9139 14 6 10.4830 0.3395 4.8513 15 7 9.8404 -0.4395 5.6816 16 14 12.2833 0.7393 5.1489 17 1 12.3872 1.8932 6.0778 18 1 12.9599 -0.4398 5.7466 19 1 12.9340 1.0822 3.8588 20 6 7.6431 0.8383 4.8810 21 6 6.2686 0.8527 4.7927 22 7 5.6603 0.9119 3.6236 23 6 4.1982 1.1263 1.1967 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.6604 1.1739 -2.1317 30 1 6.1126 0.9791 -2.1433 31 1 7.3530 0.8795 -0.0208 32 1 8.2627 0.9885 1.5345 33 1 10.2985 -0.8096 6.4524 34 1 8.1295 0.7900 5.8441 35 1 5.6785 0.8157 5.6965 36 1 3.6591 1.1650 2.1318 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239933134.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:45 Heat of formation + Delta-G solvation = -3.183566 kcal Electronic energy + Delta-G solvation = -18924.937412 eV Core-core repulsion = 15952.260029 eV Total energy + Delta-G solvation = -2972.677383 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.34488 -38.15746 -37.25190 -34.22037 -32.24207 -31.26354 -30.67606 -28.33246 -27.18329 -26.02872 -25.15074 -22.92833 -22.09278 -20.67262 -20.06860 -17.57208 -16.42782 -16.23121 -15.91324 -15.47566 -15.34580 -14.77265 -14.36734 -14.15942 -13.75606 -13.46063 -12.90529 -12.76735 -12.48456 -12.34416 -12.22445 -11.98501 -11.48812 -11.38484 -11.31454 -11.02614 -10.79054 -10.58490 -10.28794 -9.87895 -9.71047 -9.49034 -8.84577 -8.49300 -8.10836 -8.02974 -7.19645 -6.89651 -4.64716 1.43204 1.73073 2.70581 2.87331 2.99768 3.03394 3.20839 3.81287 3.83598 4.35792 4.67775 4.97273 5.01179 5.16805 5.23592 5.27929 5.36464 5.41205 5.56053 5.60355 5.65469 5.79091 5.98089 6.05421 6.30494 6.40813 6.66379 6.72353 6.83407 6.86159 6.87909 7.06987 7.11680 7.19306 7.26127 7.40403 7.45438 7.80249 8.05080 8.39863 8.67902 8.69050 9.52937 10.01560 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035030 B = 0.003819 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.127445 B = 7330.511604 C = 7957.305717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.107 3.893 4 C -0.106 4.106 5 C -0.110 4.110 6 C -0.128 4.128 7 C -0.103 4.103 8 C -0.015 4.015 9 C 0.150 3.850 10 C -0.251 4.251 11 C 0.126 3.874 12 C -0.455 4.455 13 H 0.082 0.918 14 C 0.077 3.923 15 N -0.784 5.784 16 Si 0.913 3.087 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.260 1.260 20 C -0.210 4.210 21 C 0.087 3.913 22 N -0.563 5.563 23 C -0.069 4.069 24 H 0.084 0.916 25 H 0.041 0.959 26 H 0.038 0.962 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.128 0.872 32 H 0.105 0.895 33 H 0.284 0.716 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.187 2.694 -8.272 12.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.031 3.969 4 C -0.106 4.106 5 C -0.129 4.129 6 C -0.146 4.146 7 C -0.122 4.122 8 C -0.016 4.016 9 C 0.017 3.983 10 C -0.274 4.274 11 C 0.118 3.882 12 C -0.486 4.486 13 H 0.101 0.899 14 C -0.142 4.142 15 N -0.409 5.409 16 Si 0.737 3.263 17 H -0.192 1.192 18 H -0.201 1.201 19 H -0.184 1.184 20 C -0.232 4.232 21 C -0.065 4.065 22 N -0.278 5.278 23 C -0.088 4.088 24 H 0.103 0.897 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.146 0.854 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.976 2.383 -8.048 13.038 hybrid contribution 1.614 0.223 0.330 1.662 sum -8.362 2.606 -7.718 11.675 Atomic orbital electron populations 1.22734 0.81475 1.02636 0.99765 1.88013 1.19180 1.27771 1.95336 1.21317 0.90292 0.84791 1.00457 1.19456 0.93522 1.03938 0.93684 1.20915 0.94306 1.00743 0.96900 1.20952 0.94017 1.01940 0.97720 1.21364 1.00400 0.98898 0.91547 1.18822 0.92727 0.98058 0.92001 1.19098 0.90097 0.98747 0.90397 1.21861 0.93255 1.14391 0.97899 1.17768 0.93660 0.86375 0.90418 1.19625 0.91119 1.34854 1.03037 0.89947 1.25985 1.01197 0.92325 0.94730 1.69770 1.38924 1.20898 1.11319 0.86215 0.81291 0.79009 0.79780 1.19159 1.20101 1.18387 1.22281 0.93411 1.07610 0.99903 1.21960 0.92616 0.97936 0.93992 1.67256 1.40626 1.22280 0.97626 1.21192 0.93649 0.96482 0.97464 0.89742 0.94076 0.94324 0.92479 0.92818 0.86677 0.86180 0.85435 0.87705 0.90509 0.85486 0.85991 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.45 10.69 -35.23 -0.38 -5.83 16 3 C 0.11 1.41 6.06 36.01 0.22 1.63 16 4 C -0.11 -1.68 5.50 -104.67 -0.58 -2.26 16 5 C -0.11 -1.60 9.69 -39.52 -0.38 -1.98 16 6 C -0.13 -1.91 10.03 -39.63 -0.40 -2.31 16 7 C -0.10 -1.83 9.41 -39.25 -0.37 -2.20 16 8 C -0.02 -0.31 5.87 -104.90 -0.62 -0.93 16 9 C 0.15 3.57 6.72 -83.04 -0.56 3.01 16 10 C -0.25 -6.17 9.24 -38.35 -0.35 -6.52 16 11 C 0.13 3.31 5.61 -106.56 -0.60 2.71 16 12 C -0.46 -11.73 9.12 -37.65 -0.34 -12.07 16 13 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 14 C 0.08 1.88 5.20 -17.34 -0.09 1.79 16 15 N -0.78 -19.59 10.90 55.55 0.61 -18.99 16 16 Si 0.91 17.96 29.59 -169.99 -5.03 12.92 16 17 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 18 H -0.28 -5.32 7.11 56.52 0.40 -4.91 16 19 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 20 C -0.21 -5.40 8.80 -38.67 -0.34 -5.74 16 21 C 0.09 2.10 11.15 -17.69 -0.20 1.91 16 22 N -0.56 -13.75 9.41 -9.94 -0.09 -13.85 16 23 C -0.07 -1.30 9.22 -39.25 -0.36 -1.66 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 28 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 29 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 30 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.13 2.16 6.20 -52.49 -0.33 1.84 16 32 H 0.10 2.36 6.21 -52.48 -0.33 2.03 16 33 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 34 H 0.13 3.30 6.16 -52.49 -0.32 2.97 16 35 H 0.12 2.57 8.06 -52.48 -0.42 2.15 16 36 H 0.13 2.55 7.54 -52.48 -0.40 2.15 16 LS Contribution 311.63 15.07 4.70 4.70 Total: -1.00 -28.94 311.63 -8.35 -37.29 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -4.30 Total: 6.95 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -3.85 Total: -23.20 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.51 Total: -32.83 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.38 Total: -5.83 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.94 -8.35 -37.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239933134.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.103 kcal (2) G-P(sol) polarization free energy of solvation -28.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds