Wall clock time and date at job start Mon Mar 30 2020 00:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00346 * 2 1 4 4 C 1.50700 * 109.47194 * 179.97438 * 3 2 1 5 5 C 1.38337 * 119.93576 * 90.00189 * 4 3 2 6 6 C 1.38303 * 120.24569 * 180.02562 * 5 4 3 7 7 C 1.38043 * 120.12190 * 0.02562 * 6 5 4 8 8 C 1.39332 * 119.87436 * 359.97438 * 7 6 5 9 9 C 1.48366 * 120.11990 * 180.02562 * 8 7 6 10 10 C 1.38898 * 119.61510 * 4.71905 * 9 8 7 11 11 C 1.40845 * 118.76103 * 180.27888 * 10 9 8 12 12 C 1.41528 * 120.98198 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00494 * 23.17115 * 12 11 10 14 14 C 1.40050 * 119.99778 * 203.17286 * 12 11 10 15 15 N 1.30735 * 120.00008 * 17.27454 * 14 12 11 16 16 Si 1.86800 * 120.00009 * 197.27898 * 14 12 11 17 17 H 1.48495 * 109.47509 * 94.67645 * 16 14 12 18 18 H 1.48506 * 109.46844 * 214.67399 * 16 14 12 19 19 H 1.48499 * 109.47089 * 334.67221 * 16 14 12 20 20 C 1.41135 * 118.02893 * 0.02562 * 11 10 9 21 21 C 1.37740 * 119.07147 * 0.02562 * 20 11 10 22 22 N 1.31924 * 121.15734 * 359.97438 * 21 20 11 23 23 C 1.37995 * 119.93688 * 270.28070 * 4 3 2 24 24 H 1.08996 * 109.47401 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46753 * 299.99917 * 1 2 3 26 26 H 1.09002 * 109.47120 * 59.99665 * 1 2 3 27 27 H 1.09000 * 109.46882 * 59.99952 * 3 2 1 28 28 H 1.08999 * 109.47222 * 300.00174 * 3 2 1 29 29 H 1.07999 * 119.88290 * 359.97407 * 5 4 3 30 30 H 1.07998 * 119.94132 * 179.97438 * 6 5 4 31 31 H 1.08001 * 120.05981 * 179.97438 * 7 6 5 32 32 H 1.08003 * 120.61332 * 0.25650 * 10 9 8 33 33 H 0.97004 * 120.00027 * 180.02562 * 15 14 12 34 34 H 1.07999 * 120.46437 * 180.02562 * 20 11 10 35 35 H 1.08003 * 119.42156 * 180.02562 * 21 20 11 36 36 H 1.08003 * 120.06247 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2013 1.1316 -1.1979 6 6 5.5800 1.0218 -1.2048 7 6 6.2764 0.9657 -0.0142 8 6 5.5879 1.0204 1.1958 9 6 6.3310 0.9611 2.4786 10 6 7.7199 0.9501 2.4674 11 6 8.4070 0.8875 3.6953 12 6 9.8215 0.8744 3.7387 13 1 10.3909 1.2767 2.9139 14 6 10.4830 0.3395 4.8513 15 7 9.8404 -0.4395 5.6816 16 14 12.2833 0.7393 5.1489 17 1 12.3872 1.8932 6.0778 18 1 12.9599 -0.4398 5.7466 19 1 12.9340 1.0822 3.8588 20 6 7.6431 0.8383 4.8810 21 6 6.2686 0.8527 4.7927 22 7 5.6603 0.9119 3.6236 23 6 4.1982 1.1263 1.1967 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.6604 1.1739 -2.1317 30 1 6.1126 0.9791 -2.1433 31 1 7.3530 0.8795 -0.0208 32 1 8.2627 0.9885 1.5345 33 1 10.2985 -0.8096 6.4524 34 1 8.1295 0.7900 5.8441 35 1 5.6785 0.8157 5.6965 36 1 3.6591 1.1650 2.1318 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239933134.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:45 Heat of formation + Delta-G solvation = -18.936988 kcal Electronic energy + Delta-G solvation = -18925.620531 eV Core-core repulsion = 15952.260029 eV Total energy + Delta-G solvation = -2973.360502 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.80834 -39.69652 -38.38134 -36.07713 -33.66170 -32.84187 -32.33495 -29.95519 -28.27897 -27.76584 -26.18782 -24.52804 -23.71805 -22.27032 -21.60119 -19.31687 -17.81210 -17.31554 -17.19405 -16.86005 -16.71024 -16.33663 -15.96650 -15.65225 -15.19306 -14.83869 -14.60910 -14.37826 -14.07838 -13.60253 -13.44349 -13.16570 -13.09387 -12.98134 -12.76115 -12.32224 -12.18449 -11.91673 -11.86246 -11.69813 -11.29307 -10.62223 -10.39321 -10.04779 -9.93057 -9.77139 -8.91531 -8.72708 -6.61029 -0.02651 0.42730 0.88031 1.19472 1.37786 1.52302 1.56626 2.16277 2.58348 2.84194 3.25803 3.56833 3.74723 3.88375 3.97863 4.18897 4.32192 4.33518 4.43751 4.47987 4.58361 4.60268 4.69588 4.83891 4.87993 4.91368 4.94100 5.01474 5.18382 5.20753 5.36042 5.44630 5.55760 5.62962 5.77908 5.87252 6.06747 6.17702 6.25298 6.47060 6.75261 6.76078 7.63705 8.20696 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035030 B = 0.003819 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.127445 B = 7330.511604 C = 7957.305717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.108 3.892 4 C -0.109 4.109 5 C -0.096 4.096 6 C -0.119 4.119 7 C -0.111 4.111 8 C -0.054 4.054 9 C 0.149 3.851 10 C -0.273 4.273 11 C 0.099 3.901 12 C -0.486 4.486 13 H 0.085 0.915 14 C 0.037 3.963 15 N -0.813 5.813 16 Si 0.991 3.009 17 H -0.260 1.260 18 H -0.265 1.265 19 H -0.255 1.255 20 C -0.236 4.236 21 C 0.084 3.916 22 N -0.577 5.577 23 C -0.083 4.083 24 H 0.093 0.907 25 H 0.047 0.953 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.155 0.845 30 H 0.159 0.841 31 H 0.127 0.873 32 H 0.117 0.883 33 H 0.294 0.706 34 H 0.118 0.882 35 H 0.148 0.852 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.637 3.024 -10.473 14.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.032 3.968 4 C -0.109 4.109 5 C -0.115 4.115 6 C -0.137 4.137 7 C -0.130 4.130 8 C -0.055 4.055 9 C 0.016 3.984 10 C -0.296 4.296 11 C 0.091 3.909 12 C -0.516 4.516 13 H 0.103 0.897 14 C -0.180 4.180 15 N -0.438 5.438 16 Si 0.810 3.190 17 H -0.185 1.185 18 H -0.190 1.190 19 H -0.179 1.179 20 C -0.258 4.258 21 C -0.068 4.068 22 N -0.292 5.292 23 C -0.102 4.102 24 H 0.112 0.888 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.173 0.827 30 H 0.176 0.824 31 H 0.145 0.855 32 H 0.135 0.865 33 H 0.105 0.895 34 H 0.136 0.864 35 H 0.165 0.835 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.452 2.710 -10.256 14.892 hybrid contribution 1.595 0.091 0.904 1.836 sum -8.857 2.801 -9.352 13.182 Atomic orbital electron populations 1.22950 0.79303 1.03771 1.01122 1.87951 1.21612 1.28311 1.95626 1.21371 0.88381 0.84902 1.02138 1.19808 0.95354 1.02651 0.93063 1.21414 0.94315 0.97874 0.97847 1.21368 0.94473 0.99915 0.97939 1.21491 1.00613 0.99128 0.91798 1.18846 0.93569 1.01740 0.91364 1.19681 0.90383 0.96657 0.91720 1.22045 0.93938 1.15677 0.97935 1.18177 0.94574 0.86805 0.91308 1.19926 0.91277 1.36029 1.04368 0.89703 1.26911 1.05949 0.91397 0.93747 1.69815 1.41085 1.21128 1.11768 0.85060 0.75073 0.79042 0.79779 1.18506 1.18991 1.17871 1.22261 0.94130 1.09948 0.99470 1.22359 0.92493 0.96877 0.95055 1.67386 1.40728 1.23089 0.97964 1.21149 0.93079 0.97710 0.98266 0.88840 0.93467 0.92170 0.92314 0.89634 0.82705 0.82374 0.85518 0.86536 0.89524 0.86401 0.83502 0.86720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 11.01 113.37 1.25 1.66 16 2 O -0.41 -10.89 10.69 -148.98 -1.59 -12.48 16 3 C 0.11 2.56 6.06 71.24 0.43 2.99 16 4 C -0.11 -3.24 5.50 -19.90 -0.11 -3.35 16 5 C -0.10 -2.44 9.69 22.31 0.22 -2.22 16 6 C -0.12 -3.17 10.03 22.24 0.22 -2.95 16 7 C -0.11 -3.87 9.41 22.49 0.21 -3.66 16 8 C -0.05 -2.26 5.87 -20.04 -0.12 -2.38 16 9 C 0.15 7.38 6.72 41.86 0.28 7.66 16 10 C -0.27 -14.05 9.24 23.07 0.21 -13.84 16 11 C 0.10 5.47 5.61 -21.12 -0.12 5.35 16 12 C -0.49 -25.84 9.12 23.52 0.21 -25.62 16 13 H 0.08 4.30 7.90 -2.91 -0.02 4.27 16 14 C 0.04 1.84 5.20 85.30 0.44 2.28 16 15 N -0.81 -41.53 10.90 21.84 0.24 -41.29 16 16 Si 0.99 36.74 29.59 68.60 2.03 38.77 16 17 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 18 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 19 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 20 C -0.24 -12.72 8.80 22.86 0.20 -12.52 16 21 C 0.08 4.23 11.15 84.56 0.94 5.18 16 22 N -0.58 -29.32 9.41 -185.37 -1.74 -31.06 16 23 C -0.08 -3.14 9.22 22.48 0.21 -2.93 16 24 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 1.35 8.08 -2.39 -0.02 1.33 16 28 H 0.09 1.48 8.08 -2.39 -0.02 1.46 16 29 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 30 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 31 H 0.13 4.31 6.20 -2.91 -0.02 4.29 16 32 H 0.12 5.48 6.21 -2.91 -0.02 5.47 16 33 H 0.29 13.39 8.29 -92.71 -0.77 12.62 16 34 H 0.12 6.44 6.16 -2.91 -0.02 6.43 16 35 H 0.15 6.38 8.06 -2.91 -0.02 6.35 16 36 H 0.11 4.61 7.54 -2.91 -0.02 4.59 16 Total: -1.00 -65.39 311.63 4.51 -60.88 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 1.09 Total: 29.55 kcal Atomic # 6 Polarization: -48.85 SS G_CDS: 4.49 Total: -44.36 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -1.51 Total: -72.35 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -1.59 Total: -12.48 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.77 kcal Total: -65.39 4.51 -60.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239933134.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.942 kcal (2) G-P(sol) polarization free energy of solvation -65.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds