Wall clock time and date at job start Mon Mar 30 2020 00:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 113.99740 * 2 1 4 4 C 1.50704 * 109.47269 * 179.97438 * 3 2 1 5 5 C 1.38403 * 119.92704 * 270.02361 * 4 3 2 6 6 C 1.38365 * 120.29639 * 179.97438 * 5 4 3 7 7 C 1.37961 * 120.14105 * 0.02562 * 6 5 4 8 8 C 1.39590 * 119.85102 * 359.72127 * 7 6 5 9 9 C 1.47968 * 120.14560 * 180.27450 * 8 7 6 10 10 C 1.39899 * 119.44817 * 359.97438 * 9 8 7 11 11 C 1.36613 * 119.46735 * 179.74485 * 10 9 8 12 12 C 1.41310 * 118.40802 * 0.51800 * 11 10 9 13 13 C 1.41050 * 120.54829 * 179.70673 * 12 11 10 14 14 H 1.08004 * 119.99881 * 155.69743 * 13 12 11 15 15 C 1.40032 * 120.00244 * 335.69268 * 13 12 11 16 16 N 1.30787 * 119.99659 * 343.21400 * 15 13 12 17 17 Si 1.86798 * 120.00086 * 163.21121 * 15 13 12 18 18 H 1.48508 * 109.46595 * 90.00279 * 17 15 13 19 19 H 1.48497 * 109.47221 * 210.00150 * 17 15 13 20 20 H 1.48494 * 109.47133 * 330.00549 * 17 15 13 21 21 C 1.40941 * 118.89427 * 359.72415 * 12 11 10 22 22 N 1.31263 * 120.40348 * 0.02562 * 21 12 11 23 23 C 1.37911 * 119.92437 * 90.00028 * 4 3 2 24 24 H 1.08997 * 109.47081 * 59.99989 * 1 2 3 25 25 H 1.08999 * 109.47013 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47040 * 300.00257 * 1 2 3 27 27 H 1.09002 * 109.47673 * 59.99937 * 3 2 1 28 28 H 1.08998 * 109.47517 * 300.00073 * 3 2 1 29 29 H 1.07997 * 119.85585 * 0.02562 * 5 4 3 30 30 H 1.08001 * 119.93503 * 180.02562 * 6 5 4 31 31 H 1.07999 * 120.07301 * 180.02562 * 7 6 5 32 32 H 1.07999 * 120.26594 * 359.97438 * 10 9 8 33 33 H 1.07998 * 120.79472 * 180.22361 * 11 10 9 34 34 H 0.97006 * 119.99647 * 179.97438 * 16 15 13 35 35 H 1.07998 * 119.80154 * 179.97438 * 21 12 11 36 36 H 1.08004 * 120.07860 * 359.97373 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1866 0.0006 5 6 4.2004 1.1318 1.2004 6 6 5.5797 1.0222 1.2099 7 6 6.2784 0.9672 0.0216 8 6 5.5904 1.0166 -1.1919 9 6 6.3328 0.9520 -2.4702 10 6 7.7273 0.8417 -2.4509 11 6 8.4127 0.7768 -3.6308 12 6 7.6803 0.8351 -4.8379 13 6 8.3427 0.7781 -6.0819 14 1 7.8152 0.4338 -6.9592 15 6 9.6841 1.1680 -6.1794 16 7 10.2284 1.8817 -5.2282 17 14 10.6960 0.6686 -7.6680 18 1 10.5754 1.7095 -8.7203 19 1 12.1205 0.5266 -7.2732 20 1 10.1966 -0.6272 -8.1940 21 6 6.2770 0.9515 -4.7780 22 7 5.6637 1.0052 -3.6187 23 6 4.1989 1.1321 -1.1943 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6886 1.8465 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.6581 1.1741 2.1334 30 1 6.1104 0.9795 2.1495 31 1 7.3549 0.8811 0.0303 32 1 8.2574 0.8045 -1.5107 33 1 9.4890 0.6878 -3.6409 34 1 11.1578 2.1515 -5.2956 35 1 5.7027 0.9978 -5.6915 36 1 3.6610 1.1741 -2.1299 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239933332.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:47 Heat of formation + Delta-G solvation = -4.324512 kcal Electronic energy + Delta-G solvation = -18879.734120 eV Core-core repulsion = 15907.007262 eV Total energy + Delta-G solvation = -2972.726858 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.23544 -38.17480 -37.19895 -34.33164 -32.11238 -31.21804 -30.58474 -29.12191 -27.13552 -25.55861 -25.15419 -22.75104 -21.98348 -20.77196 -19.97607 -17.54104 -16.63231 -16.29534 -15.86962 -15.48890 -15.39867 -14.84913 -14.53033 -13.96553 -13.72361 -13.37119 -12.86073 -12.75374 -12.35654 -12.16615 -12.03384 -11.81389 -11.71228 -11.46709 -11.27951 -11.25146 -10.76145 -10.53936 -10.52391 -9.94277 -9.66436 -9.55815 -8.69733 -8.40396 -8.36129 -8.11205 -7.31725 -7.00751 -4.58672 1.53954 1.84303 2.64785 2.91217 2.93318 2.97651 3.13000 3.71503 3.87287 4.33996 4.66804 5.04392 5.10452 5.28283 5.31572 5.33197 5.44255 5.50345 5.58922 5.61697 5.71306 5.87685 6.06217 6.10828 6.41825 6.43706 6.61958 6.69510 6.78821 6.86469 6.94147 7.02848 7.14214 7.17055 7.28557 7.45781 7.68148 7.75122 7.85657 8.28626 8.48129 8.58276 9.53015 9.85177 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035140 B = 0.003703 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.627191 B = 7558.684450 C = 8222.613305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.107 3.893 4 C -0.097 4.097 5 C -0.130 4.130 6 C -0.120 4.120 7 C -0.128 4.128 8 C 0.018 3.982 9 C -0.009 4.009 10 C -0.121 4.121 11 C -0.145 4.145 12 C 0.069 3.931 13 C -0.433 4.433 14 H 0.087 0.913 15 C 0.072 3.928 16 N -0.776 5.776 17 Si 0.916 3.084 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.257 1.257 21 C -0.017 4.017 22 N -0.448 5.448 23 C -0.090 4.090 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.287 0.713 35 H 0.129 0.871 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.691 -0.521 7.597 10.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.031 3.969 4 C -0.097 4.097 5 C -0.148 4.148 6 C -0.138 4.138 7 C -0.147 4.147 8 C 0.017 3.983 9 C -0.143 4.143 10 C -0.141 4.141 11 C -0.169 4.169 12 C 0.064 3.936 13 C -0.462 4.462 14 H 0.105 0.895 15 C -0.149 4.149 16 N -0.400 5.400 17 Si 0.739 3.261 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.181 1.181 21 C -0.182 4.182 22 N -0.155 5.155 23 C -0.109 4.109 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.120 0.880 33 H 0.145 0.855 34 H 0.098 0.902 35 H 0.147 0.853 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.240 -0.478 7.703 11.290 hybrid contribution 1.365 0.077 -0.659 1.518 sum -6.875 -0.402 7.044 9.851 Atomic orbital electron populations 1.22728 0.81579 1.02565 0.99746 1.88011 1.19094 1.27862 1.95330 1.21329 0.90515 0.84690 1.00339 1.19407 0.93270 1.03280 0.93739 1.20812 0.94247 1.03065 0.96701 1.20876 0.94000 1.01432 0.97517 1.21239 0.99851 1.01921 0.91688 1.18683 0.92474 0.95389 0.91715 1.18770 0.89886 1.15510 0.90122 1.21311 0.94111 1.00707 0.97959 1.21338 1.00316 1.04104 0.91186 1.18619 0.92638 0.88328 0.93969 1.19685 0.95207 1.35744 0.95563 0.89478 1.26100 0.98305 0.92353 0.98156 1.69780 1.14626 1.23282 1.32273 0.86168 0.78641 0.80498 0.80757 1.19101 1.19801 1.18084 1.22455 0.92178 1.09830 0.93744 1.66908 1.41140 1.09248 0.98179 1.21130 0.93723 0.98810 0.97230 0.94100 0.89795 0.94364 0.92937 0.92547 0.87037 0.86599 0.86102 0.88030 0.85509 0.90174 0.85305 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.38 -5.66 10.69 -35.23 -0.38 -6.04 16 3 C 0.11 1.49 6.06 36.01 0.22 1.71 16 4 C -0.10 -1.62 5.50 -104.68 -0.58 -2.20 16 5 C -0.13 -1.99 9.69 -39.47 -0.38 -2.38 16 6 C -0.12 -1.87 10.03 -39.64 -0.40 -2.26 16 7 C -0.13 -2.31 9.42 -39.18 -0.37 -2.67 16 8 C 0.02 0.38 5.88 -104.89 -0.62 -0.24 16 9 C -0.01 -0.22 6.74 -82.74 -0.56 -0.78 16 10 C -0.12 -2.83 9.38 -39.55 -0.37 -3.20 16 11 C -0.14 -3.64 8.74 -39.00 -0.34 -3.98 16 12 C 0.07 1.78 5.59 -106.64 -0.60 1.18 16 13 C -0.43 -10.72 9.07 -37.84 -0.34 -11.06 16 14 H 0.09 2.02 7.90 -52.48 -0.41 1.61 16 15 C 0.07 1.66 5.18 -17.32 -0.09 1.58 16 16 N -0.78 -18.69 10.91 55.55 0.61 -18.08 16 17 Si 0.92 17.21 29.59 -169.99 -5.03 12.18 16 18 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 19 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 20 H -0.26 -4.81 7.11 56.52 0.40 -4.40 16 21 C -0.02 -0.41 10.97 -16.77 -0.18 -0.60 16 22 N -0.45 -11.09 9.39 -9.10 -0.09 -11.17 16 23 C -0.09 -1.76 9.22 -39.18 -0.36 -2.12 16 24 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 28 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 29 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 31 H 0.12 2.03 6.15 -52.49 -0.32 1.70 16 32 H 0.10 2.09 6.15 -52.49 -0.32 1.76 16 33 H 0.13 3.21 6.20 -52.49 -0.33 2.88 16 34 H 0.29 6.22 8.30 -40.82 -0.34 5.88 16 35 H 0.13 2.92 8.06 -52.49 -0.42 2.50 16 36 H 0.13 2.58 7.52 -52.48 -0.39 2.19 16 LS Contribution 311.37 15.07 4.69 4.69 Total: -1.00 -28.01 311.37 -8.34 -36.35 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -4.29 Total: 7.66 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -3.86 Total: -25.58 kcal Atomic # 7 Polarization: -29.78 SS G_CDS: 0.52 Total: -29.26 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.38 Total: -6.04 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.18 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.01 -8.34 -36.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239933332.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.029 kcal (2) G-P(sol) polarization free energy of solvation -28.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds