Wall clock time and date at job start Mon Mar 30 2020 00:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99723 * 2 1 4 4 C 1.50705 * 109.46957 * 179.97438 * 3 2 1 5 5 C 1.38341 * 119.94320 * 270.02129 * 4 3 2 6 6 C 1.38298 * 120.24673 * 179.97438 * 5 4 3 7 7 C 1.38039 * 120.12401 * 359.76707 * 6 5 4 8 8 C 1.39327 * 119.87188 * 0.48333 * 7 6 5 9 9 C 1.48390 * 120.11888 * 179.76593 * 8 7 6 10 10 C 1.40034 * 120.81862 * 179.72959 * 9 8 7 11 11 C 1.38515 * 119.42168 * 180.02562 * 10 9 8 12 12 N 1.31476 * 121.14208 * 359.97438 * 11 10 9 13 13 C 1.33642 * 121.79729 * 0.02562 * 12 11 10 14 14 C 1.41427 * 119.78042 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00204 * 180.02562 * 14 13 12 16 16 C 1.40033 * 119.99728 * 359.97438 * 14 13 12 17 17 N 1.30738 * 120.00040 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99965 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46793 * 90.00278 * 18 16 14 20 20 H 1.48499 * 109.47080 * 209.99999 * 18 16 14 21 21 H 1.48494 * 109.46921 * 330.00430 * 18 16 14 22 22 C 1.39305 * 120.82236 * 359.75058 * 9 8 7 23 23 C 1.37996 * 119.93486 * 90.00219 * 4 3 2 24 24 H 1.09000 * 109.47080 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47433 * 299.99745 * 1 2 3 26 26 H 1.09000 * 109.47437 * 60.00131 * 1 2 3 27 27 H 1.08996 * 109.47199 * 60.00496 * 3 2 1 28 28 H 1.09003 * 109.47006 * 299.99819 * 3 2 1 29 29 H 1.08000 * 119.87642 * 0.02562 * 5 4 3 30 30 H 1.08004 * 119.94008 * 180.02562 * 6 5 4 31 31 H 1.07996 * 120.06840 * 180.28160 * 7 6 5 32 32 H 1.08001 * 120.29314 * 359.97438 * 10 9 8 33 33 H 1.08000 * 119.42281 * 179.72121 * 11 10 9 34 34 H 0.97001 * 119.99817 * 180.02562 * 17 16 14 35 35 H 1.08004 * 120.58340 * 359.95717 * 22 9 8 36 36 H 1.08000 * 120.06310 * 359.97144 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2003 1.1318 1.1997 6 6 5.5789 1.0221 1.2076 7 6 6.2759 0.9618 0.0176 8 6 5.5887 1.0218 -1.1929 9 6 6.3329 0.9626 -2.4753 10 6 5.6567 1.0160 -3.7004 11 6 6.3802 0.9580 -4.8801 12 7 7.6908 0.8541 -4.8695 13 6 8.3837 0.7994 -3.7281 14 6 9.7930 0.6871 -3.7665 15 1 10.3564 0.6422 -2.8462 16 6 10.4577 0.6332 -4.9978 17 7 9.7756 0.6871 -6.1118 18 14 12.3192 0.4856 -5.0486 19 1 12.7018 -0.9492 -5.0607 20 1 12.8348 1.1458 -6.2748 21 1 12.9006 1.1430 -3.8507 22 6 7.7215 0.8521 -2.4903 23 6 4.1994 1.1320 -1.1949 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.6586 1.1741 2.1331 30 1 6.1109 0.9794 2.1466 31 1 7.3521 0.8715 0.0249 32 1 4.5803 1.1009 -3.7252 33 1 5.8583 0.9946 -5.8249 34 1 10.2360 0.6493 -6.9647 35 1 8.2793 0.8084 -1.5665 36 1 3.6614 1.1740 -2.1305 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239936740.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:26 Heat of formation + Delta-G solvation = -9.191411 kcal Electronic energy + Delta-G solvation = -18923.843103 eV Core-core repulsion = 15950.905201 eV Total energy + Delta-G solvation = -2972.937903 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.78886 -39.65645 -38.41975 -35.61425 -34.08959 -32.81202 -31.89443 -30.22874 -28.26547 -27.58291 -26.19463 -24.57242 -23.74501 -22.21548 -21.56224 -19.17854 -17.98133 -17.34769 -17.28066 -16.85859 -16.56263 -16.14709 -16.00501 -15.61302 -15.15740 -14.88013 -14.42643 -14.38359 -13.75052 -13.66241 -13.56124 -13.13234 -12.95821 -12.85971 -12.74483 -12.39496 -12.28142 -12.00194 -11.85009 -11.50229 -11.30560 -10.76908 -10.63080 -9.81815 -9.62458 -9.53496 -9.06149 -8.31039 -6.54574 -0.02762 0.37993 0.87492 1.37997 1.40040 1.53900 1.56760 2.22313 2.66325 2.89249 3.25144 3.75929 3.86611 3.94272 3.97719 4.12455 4.25487 4.31103 4.40045 4.46806 4.57156 4.59858 4.62733 4.65569 4.79589 4.88282 4.96239 5.00664 5.12013 5.21326 5.39799 5.49274 5.51559 5.58359 5.64503 5.92039 6.05425 6.14370 6.23676 6.26367 6.70860 6.92868 8.16005 8.44197 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.034915 B = 0.003805 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.750381 B = 7356.078633 C = 8028.086948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.106 3.894 4 C -0.103 4.103 5 C -0.101 4.101 6 C -0.119 4.119 7 C -0.118 4.118 8 C -0.057 4.057 9 C 0.000 4.000 10 C -0.302 4.302 11 C 0.106 3.894 12 N -0.522 5.522 13 C 0.223 3.777 14 C -0.469 4.469 15 H 0.090 0.910 16 C 0.022 3.978 17 N -0.757 5.757 18 Si 0.990 3.010 19 H -0.262 1.262 20 H -0.267 1.267 21 H -0.254 1.254 22 C -0.275 4.275 23 C -0.099 4.099 24 H 0.093 0.907 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.140 0.860 34 H 0.279 0.721 35 H 0.113 0.887 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.329 1.474 12.302 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.334 6.334 3 C 0.031 3.969 4 C -0.103 4.103 5 C -0.119 4.119 6 C -0.136 4.136 7 C -0.136 4.136 8 C -0.057 4.057 9 C -0.006 4.006 10 C -0.324 4.324 11 C -0.058 4.058 12 N -0.235 5.235 13 C 0.098 3.902 14 C -0.501 4.501 15 H 0.108 0.892 16 C -0.199 4.199 17 N -0.379 5.379 18 Si 0.809 3.191 19 H -0.187 1.187 20 H -0.192 1.192 21 H -0.178 1.178 22 C -0.298 4.298 23 C -0.117 4.117 24 H 0.111 0.889 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.171 0.829 30 H 0.172 0.828 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.158 0.842 34 H 0.090 0.910 35 H 0.131 0.869 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.733 1.277 11.285 16.329 hybrid contribution 0.170 0.128 0.159 0.265 sum -11.563 1.404 11.444 16.329 Atomic orbital electron populations 1.22949 0.79278 1.03782 1.01154 1.87950 1.21600 1.28244 1.95640 1.21390 0.88261 0.84956 1.02333 1.19783 0.95346 1.02076 0.93061 1.21403 0.94222 0.98249 0.98030 1.21372 0.94581 0.99687 0.97991 1.21505 1.00535 0.99368 0.92192 1.19009 0.93610 1.00830 0.92265 1.18991 0.92774 0.96153 0.92661 1.21661 0.99780 1.18333 0.92664 1.22907 0.91372 0.94121 0.97407 1.68656 1.06864 1.18411 1.29604 1.19004 0.94690 0.89204 0.87255 1.20000 0.90893 1.44536 0.94634 0.89209 1.27038 1.05894 0.92513 0.94454 1.70237 1.39153 1.29615 0.98932 0.85107 0.75265 0.79476 0.79226 1.18686 1.19179 1.17760 1.21989 0.93949 1.15705 0.98109 1.21224 0.92805 0.99054 0.98611 0.88863 0.92349 0.93258 0.89912 0.91786 0.82936 0.82795 0.85979 0.85724 0.84220 0.91006 0.86930 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -9.85 10.69 -148.98 -1.59 -11.44 16 3 C 0.11 2.24 6.06 71.24 0.43 2.67 16 4 C -0.10 -2.78 5.50 -19.90 -0.11 -2.89 16 5 C -0.10 -2.42 9.69 22.31 0.22 -2.20 16 6 C -0.12 -3.07 10.03 22.24 0.22 -2.85 16 7 C -0.12 -3.97 9.45 22.48 0.21 -3.76 16 8 C -0.06 -2.21 5.88 -20.04 -0.12 -2.33 16 9 C 0.00 0.02 5.91 -19.88 -0.12 -0.10 16 10 C -0.30 -13.90 9.52 22.77 0.22 -13.69 16 11 C 0.11 5.34 11.17 84.81 0.95 6.29 16 12 N -0.52 -30.41 7.85 -189.36 -1.49 -31.89 16 13 C 0.22 12.88 6.55 40.20 0.26 13.15 16 14 C -0.47 -26.24 9.14 23.49 0.21 -26.02 16 15 H 0.09 4.66 7.85 -2.91 -0.02 4.64 16 16 C 0.02 1.17 5.50 85.29 0.47 1.64 16 17 N -0.76 -42.05 11.46 21.84 0.25 -41.80 16 18 Si 0.99 38.81 29.56 68.60 2.03 40.84 16 19 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 20 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 21 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 22 C -0.28 -14.14 9.22 23.07 0.21 -13.92 16 23 C -0.10 -3.30 9.10 22.48 0.20 -3.09 16 24 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.08 1.28 8.08 -2.39 -0.02 1.26 16 28 H 0.06 1.24 8.08 -2.39 -0.02 1.22 16 29 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 31 H 0.12 4.13 6.29 -2.91 -0.02 4.11 16 32 H 0.12 4.90 6.32 -2.91 -0.02 4.88 16 33 H 0.14 6.20 8.06 -2.91 -0.02 6.18 16 34 H 0.28 13.95 8.29 -92.71 -0.77 13.18 16 35 H 0.11 5.32 6.33 -2.91 -0.02 5.31 16 36 H 0.12 4.00 6.29 -2.91 -0.02 3.99 16 Total: -1.00 -69.24 310.73 4.80 -64.44 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 1.09 Total: 25.34 kcal Atomic # 6 Polarization: -50.00 SS G_CDS: 4.51 Total: -45.49 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -1.24 Total: -73.69 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -1.59 Total: -11.44 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -69.24 4.80 -64.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239936740.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.248 kcal (2) G-P(sol) polarization free energy of solvation -69.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds