Wall clock time and date at job start Mon Mar 30 2020 00:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99915 * 2 1 4 4 C 1.50696 * 109.47027 * 179.97438 * 3 2 1 5 5 C 1.38343 * 119.94339 * 270.02234 * 4 3 2 6 6 C 1.38290 * 120.24427 * 179.97438 * 5 4 3 7 7 C 1.38044 * 120.12114 * 359.71934 * 6 5 4 8 8 C 1.39311 * 119.87447 * 0.55171 * 7 6 5 9 9 C 1.48409 * 120.11654 * 179.71904 * 8 7 6 10 10 C 1.39716 * 120.40965 * 179.75258 * 9 8 7 11 11 N 1.31908 * 121.15068 * 179.97438 * 10 9 8 12 12 C 1.31523 * 122.12516 * 0.02562 * 11 10 9 13 13 C 1.40778 * 120.66162 * 359.74017 * 12 11 10 14 14 C 1.41437 * 120.60268 * 180.29124 * 13 12 11 15 15 H 1.07995 * 120.00516 * 23.70941 * 14 13 12 16 16 C 1.39939 * 119.99579 * 203.71384 * 14 13 12 17 17 N 1.30827 * 120.00100 * 17.54211 * 16 14 13 18 18 Si 1.86799 * 119.99737 * 197.54317 * 16 14 13 19 19 H 1.48497 * 109.46926 * 90.00150 * 18 16 14 20 20 H 1.48503 * 109.47091 * 209.99675 * 18 16 14 21 21 H 1.48494 * 109.47339 * 329.99967 * 18 16 14 22 22 C 1.39139 * 120.41333 * 359.73478 * 9 8 7 23 23 C 1.37998 * 119.93952 * 90.00281 * 4 3 2 24 24 H 1.08997 * 109.47428 * 60.00188 * 1 2 3 25 25 H 1.09008 * 109.47269 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47291 * 299.99411 * 1 2 3 27 27 H 1.09003 * 109.46787 * 60.00115 * 3 2 1 28 28 H 1.08997 * 109.47154 * 300.00471 * 3 2 1 29 29 H 1.07999 * 119.87493 * 359.97438 * 5 4 3 30 30 H 1.08004 * 119.94146 * 180.02562 * 6 5 4 31 31 H 1.08002 * 120.06357 * 180.30433 * 7 6 5 32 32 H 1.08002 * 119.42039 * 0.02562 * 10 9 8 33 33 H 1.08001 * 119.67113 * 180.02562 * 12 11 10 34 34 H 0.96998 * 119.99988 * 179.97438 * 17 16 14 35 35 H 1.08001 * 120.95494 * 359.97438 * 22 9 8 36 36 H 1.08001 * 120.05972 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 0.0006 5 6 4.2003 1.1317 1.1997 6 6 5.5788 1.0220 1.2075 7 6 6.2757 0.9606 0.0175 8 6 5.5885 1.0211 -1.1929 9 6 6.3329 0.9619 -2.4755 10 6 5.6495 1.0169 -3.6929 11 7 6.2964 0.9660 -4.8414 12 6 7.6060 0.8613 -4.9024 13 6 8.3773 0.8043 -3.7261 14 6 9.7860 0.6980 -3.7932 15 1 10.3117 1.0345 -4.6745 16 6 10.4988 0.1565 -2.7175 17 7 9.8771 -0.5555 -1.8130 18 14 12.3379 0.4505 -2.5732 19 1 12.5813 1.6881 -1.7895 20 1 12.9711 -0.7034 -1.8854 21 1 12.9232 0.6003 -3.9296 22 6 7.7198 0.8514 -2.4805 23 6 4.1995 1.1319 -1.1949 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.6885 1.8463 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.6587 1.1748 2.1330 30 1 6.1108 0.9792 2.1465 31 1 7.3518 0.8700 0.0247 32 1 4.5730 1.1033 -3.6936 33 1 8.0950 0.8233 -5.8646 34 1 10.3713 -0.9311 -1.0676 35 1 8.2770 0.8074 -1.5564 36 1 3.6615 1.1740 -2.1304 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239936844.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:09 Heat of formation + Delta-G solvation = -4.055998 kcal Electronic energy + Delta-G solvation = -19158.901487 eV Core-core repulsion = 16186.186272 eV Total energy + Delta-G solvation = -2972.715214 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.38240 -38.18167 -37.29058 -34.15137 -32.65284 -31.43170 -30.40503 -28.42412 -27.19767 -25.78836 -25.11701 -22.86547 -22.34027 -20.75780 -19.80347 -17.45482 -16.56332 -16.36549 -15.89169 -15.59348 -15.44817 -14.93118 -14.68181 -14.19363 -13.74054 -13.21983 -12.88400 -12.79346 -12.46792 -12.27072 -12.10029 -11.79224 -11.63894 -11.43814 -11.25739 -11.17101 -10.83045 -10.68393 -10.43364 -9.87971 -9.73696 -9.43848 -9.20363 -8.50048 -8.16217 -7.91255 -7.24918 -6.89406 -4.55273 1.43114 1.70206 2.65598 2.94834 2.99797 3.02778 3.14945 3.80974 3.82191 4.35488 4.61765 4.95007 4.99018 5.21950 5.24684 5.26692 5.41237 5.43370 5.54003 5.55852 5.62277 5.86475 5.91377 6.03497 6.27286 6.31354 6.54440 6.66764 6.75343 6.84337 6.87162 7.00363 7.08870 7.12159 7.20930 7.40118 7.64293 7.78828 7.87022 8.35417 8.60898 8.64091 9.56628 10.00021 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.026180 B = 0.004513 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.254740 B = 6203.375780 C = 7047.323854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.107 3.893 4 C -0.098 4.098 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.105 4.105 8 C -0.011 4.011 9 C -0.094 4.094 10 C -0.023 4.023 11 N -0.470 5.470 12 C -0.017 4.017 13 C 0.061 3.939 14 C -0.450 4.450 15 H 0.084 0.916 16 C 0.075 3.925 17 N -0.790 5.790 18 Si 0.913 3.087 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.116 4.116 23 C -0.097 4.097 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.284 0.716 35 H 0.134 0.866 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.404 2.798 7.509 12.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.031 3.969 4 C -0.098 4.098 5 C -0.135 4.135 6 C -0.141 4.141 7 C -0.123 4.123 8 C -0.012 4.012 9 C -0.096 4.096 10 C -0.181 4.181 11 N -0.177 5.177 12 C -0.178 4.178 13 C 0.057 3.943 14 C -0.479 4.479 15 H 0.103 0.897 16 C -0.144 4.144 17 N -0.414 5.414 18 Si 0.737 3.263 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.184 1.184 22 C -0.142 4.142 23 C -0.115 4.115 24 H 0.059 0.941 25 H 0.103 0.897 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.133 0.867 30 H 0.137 0.863 31 H 0.148 0.852 32 H 0.139 0.861 33 H 0.145 0.855 34 H 0.095 0.905 35 H 0.151 0.849 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.730 2.519 6.947 12.218 hybrid contribution 1.132 0.136 0.994 1.513 sum -8.598 2.655 7.941 12.001 Atomic orbital electron populations 1.22737 0.81447 1.02672 0.99778 1.88017 1.19200 1.27735 1.95337 1.21327 0.90324 0.84809 1.00476 1.19368 0.93367 1.03478 0.93624 1.20879 0.94288 1.01442 0.96842 1.20999 0.93999 1.01200 0.97873 1.21438 1.00721 0.98570 0.91597 1.18963 0.92482 0.96651 0.93068 1.19452 0.94397 1.03848 0.91932 1.21779 0.97864 1.11211 0.87283 1.66938 1.11075 1.10409 1.29270 1.22557 0.88724 1.09229 0.97272 1.18476 0.94425 0.89728 0.91692 1.19576 0.91266 1.35202 1.01902 0.89749 1.25976 1.01580 0.92307 0.94556 1.69788 1.38956 1.22288 1.10391 0.86224 0.81389 0.78921 0.79779 1.19123 1.20153 1.18398 1.21851 0.91470 1.01626 0.99219 1.21095 0.93608 0.99557 0.97272 0.94090 0.89713 0.94286 0.92772 0.92526 0.86729 0.86298 0.85246 0.86091 0.85540 0.90474 0.84895 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.35 10.69 -35.23 -0.38 -5.72 16 3 C 0.11 1.37 6.06 36.00 0.22 1.58 16 4 C -0.10 -1.54 5.50 -104.67 -0.58 -2.12 16 5 C -0.12 -1.73 9.69 -39.52 -0.38 -2.11 16 6 C -0.12 -1.93 10.03 -39.63 -0.40 -2.33 16 7 C -0.11 -1.98 9.44 -39.25 -0.37 -2.35 16 8 C -0.01 -0.22 5.88 -104.90 -0.62 -0.84 16 9 C -0.09 -2.20 5.88 -104.82 -0.62 -2.82 16 10 C -0.02 -0.55 10.60 -16.97 -0.18 -0.73 16 11 N -0.47 -11.73 10.32 -12.28 -0.13 -11.86 16 12 C -0.02 -0.43 10.96 -16.72 -0.18 -0.61 16 13 C 0.06 1.59 5.59 -106.70 -0.60 1.00 16 14 C -0.45 -11.40 9.08 -37.73 -0.34 -11.74 16 15 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 16 C 0.07 1.78 5.18 -17.34 -0.09 1.69 16 17 N -0.79 -19.38 10.92 55.55 0.61 -18.77 16 18 Si 0.91 17.77 29.59 -169.99 -5.03 12.74 16 19 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 20 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.26 -5.02 7.11 56.52 0.40 -4.61 16 22 C -0.12 -2.94 8.17 -38.23 -0.31 -3.25 16 23 C -0.10 -1.74 9.09 -39.26 -0.36 -2.10 16 24 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 28 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 29 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.12 1.55 8.06 -52.48 -0.42 1.12 16 31 H 0.13 2.50 6.26 -52.49 -0.33 2.17 16 32 H 0.12 2.51 6.20 -52.49 -0.33 2.19 16 33 H 0.13 2.94 8.06 -52.49 -0.42 2.51 16 34 H 0.28 6.32 8.30 -40.82 -0.34 5.99 16 35 H 0.13 3.35 4.44 -52.49 -0.23 3.11 16 36 H 0.12 2.09 6.22 -52.49 -0.33 1.76 16 LS Contribution 309.09 15.07 4.66 4.66 Total: -1.00 -28.47 309.09 -8.10 -36.57 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -4.14 Total: 7.70 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -3.69 Total: -25.31 kcal Atomic # 7 Polarization: -31.11 SS G_CDS: 0.48 Total: -30.63 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.38 Total: -5.72 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.47 -8.10 -36.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239936844.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.516 kcal (2) G-P(sol) polarization free energy of solvation -28.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds