Wall clock time and date at job start Mon Mar 30 2020 00:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99915 * 2 1 4 4 C 1.50696 * 109.47027 * 179.97438 * 3 2 1 5 5 C 1.38343 * 119.94339 * 270.02234 * 4 3 2 6 6 C 1.38290 * 120.24427 * 179.97438 * 5 4 3 7 7 C 1.38044 * 120.12114 * 359.71934 * 6 5 4 8 8 C 1.39311 * 119.87447 * 0.55171 * 7 6 5 9 9 C 1.48409 * 120.11654 * 179.71904 * 8 7 6 10 10 C 1.39716 * 120.40965 * 179.75258 * 9 8 7 11 11 N 1.31908 * 121.15068 * 179.97438 * 10 9 8 12 12 C 1.31523 * 122.12516 * 0.02562 * 11 10 9 13 13 C 1.40778 * 120.66162 * 359.74017 * 12 11 10 14 14 C 1.41437 * 120.60268 * 180.29124 * 13 12 11 15 15 H 1.07995 * 120.00516 * 23.70941 * 14 13 12 16 16 C 1.39939 * 119.99579 * 203.71384 * 14 13 12 17 17 N 1.30827 * 120.00100 * 17.54211 * 16 14 13 18 18 Si 1.86799 * 119.99737 * 197.54317 * 16 14 13 19 19 H 1.48497 * 109.46926 * 90.00150 * 18 16 14 20 20 H 1.48503 * 109.47091 * 209.99675 * 18 16 14 21 21 H 1.48494 * 109.47339 * 329.99967 * 18 16 14 22 22 C 1.39139 * 120.41333 * 359.73478 * 9 8 7 23 23 C 1.37998 * 119.93952 * 90.00281 * 4 3 2 24 24 H 1.08997 * 109.47428 * 60.00188 * 1 2 3 25 25 H 1.09008 * 109.47269 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47291 * 299.99411 * 1 2 3 27 27 H 1.09003 * 109.46787 * 60.00115 * 3 2 1 28 28 H 1.08997 * 109.47154 * 300.00471 * 3 2 1 29 29 H 1.07999 * 119.87493 * 359.97438 * 5 4 3 30 30 H 1.08004 * 119.94146 * 180.02562 * 6 5 4 31 31 H 1.08002 * 120.06357 * 180.30433 * 7 6 5 32 32 H 1.08002 * 119.42039 * 0.02562 * 10 9 8 33 33 H 1.08001 * 119.67113 * 180.02562 * 12 11 10 34 34 H 0.96998 * 119.99988 * 179.97438 * 17 16 14 35 35 H 1.08001 * 120.95494 * 359.97438 * 22 9 8 36 36 H 1.08001 * 120.05972 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 0.0006 5 6 4.2003 1.1317 1.1997 6 6 5.5788 1.0220 1.2075 7 6 6.2757 0.9606 0.0175 8 6 5.5885 1.0211 -1.1929 9 6 6.3329 0.9619 -2.4755 10 6 5.6495 1.0169 -3.6929 11 7 6.2964 0.9660 -4.8414 12 6 7.6060 0.8613 -4.9024 13 6 8.3773 0.8043 -3.7261 14 6 9.7860 0.6980 -3.7932 15 1 10.3117 1.0345 -4.6745 16 6 10.4988 0.1565 -2.7175 17 7 9.8771 -0.5555 -1.8130 18 14 12.3379 0.4505 -2.5732 19 1 12.5813 1.6881 -1.7895 20 1 12.9711 -0.7034 -1.8854 21 1 12.9232 0.6003 -3.9296 22 6 7.7198 0.8514 -2.4805 23 6 4.1995 1.1319 -1.1949 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.6885 1.8463 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.6587 1.1748 2.1330 30 1 6.1108 0.9792 2.1465 31 1 7.3518 0.8700 0.0247 32 1 4.5730 1.1033 -3.6936 33 1 8.0950 0.8233 -5.8646 34 1 10.3713 -0.9311 -1.0676 35 1 8.2770 0.8074 -1.5564 36 1 3.6615 1.1740 -2.1304 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239936844.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:08 Heat of formation + Delta-G solvation = -19.438434 kcal Electronic energy + Delta-G solvation = -19159.568519 eV Core-core repulsion = 16186.186272 eV Total energy + Delta-G solvation = -2973.382247 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.85379 -39.72487 -38.40164 -36.00946 -34.16570 -32.75291 -32.25965 -30.00011 -28.20304 -27.52089 -26.19050 -24.45038 -23.99079 -22.35084 -21.30734 -19.23455 -18.09733 -17.30995 -17.22089 -17.01388 -16.90665 -16.40464 -16.15769 -15.48032 -15.17436 -14.66387 -14.52351 -14.42386 -13.81968 -13.60514 -13.50634 -13.23707 -13.11146 -13.08998 -12.76049 -12.34864 -12.24556 -12.17396 -11.85722 -11.59319 -11.22439 -10.79485 -10.61356 -10.07046 -9.82448 -9.79031 -8.93039 -8.69248 -6.49041 -0.07701 0.39067 0.89854 1.22477 1.38699 1.52392 1.52496 2.17143 2.58001 2.80500 3.25596 3.71396 3.76738 3.89842 3.99597 4.04655 4.26459 4.35444 4.42853 4.50566 4.54042 4.58863 4.62026 4.67684 4.78464 4.88954 4.90740 5.03689 5.14550 5.20123 5.26915 5.50638 5.55670 5.61657 5.85225 5.87365 6.01470 6.07510 6.25639 6.45311 6.71626 6.73433 7.64115 8.21261 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.026180 B = 0.004513 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.254740 B = 6203.375780 C = 7047.323854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.107 3.893 4 C -0.099 4.099 5 C -0.103 4.103 6 C -0.119 4.119 7 C -0.121 4.121 8 C -0.047 4.047 9 C -0.089 4.089 10 C -0.037 4.037 11 N -0.479 5.479 12 C -0.042 4.042 13 C 0.038 3.962 14 C -0.480 4.480 15 H 0.088 0.912 16 C 0.037 3.963 17 N -0.816 5.816 18 Si 0.989 3.011 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.256 1.256 22 C -0.142 4.142 23 C -0.102 4.102 24 H 0.049 0.951 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.153 0.847 30 H 0.150 0.850 31 H 0.112 0.888 32 H 0.147 0.853 33 H 0.137 0.863 34 H 0.293 0.707 35 H 0.127 0.873 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.474 3.143 9.696 14.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.335 6.335 3 C 0.031 3.969 4 C -0.100 4.100 5 C -0.121 4.121 6 C -0.136 4.136 7 C -0.139 4.139 8 C -0.048 4.048 9 C -0.091 4.091 10 C -0.195 4.195 11 N -0.186 5.186 12 C -0.202 4.202 13 C 0.034 3.966 14 C -0.509 4.509 15 H 0.106 0.894 16 C -0.180 4.180 17 N -0.441 5.441 18 Si 0.809 3.191 19 H -0.185 1.185 20 H -0.191 1.191 21 H -0.179 1.179 22 C -0.168 4.168 23 C -0.120 4.120 24 H 0.068 0.932 25 H 0.111 0.889 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.171 0.829 30 H 0.167 0.833 31 H 0.130 0.870 32 H 0.164 0.836 33 H 0.154 0.846 34 H 0.104 0.896 35 H 0.145 0.855 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.826 2.863 9.124 14.444 hybrid contribution 1.289 0.004 0.438 1.361 sum -9.537 2.867 9.562 13.806 Atomic orbital electron populations 1.22948 0.79281 1.03752 1.01172 1.87955 1.21605 1.28287 1.95644 1.21387 0.88132 0.84943 1.02414 1.19768 0.95369 1.01853 0.92960 1.21356 0.93948 0.98663 0.98125 1.21321 0.94731 0.99837 0.97750 1.21438 1.00159 0.99765 0.92566 1.18940 0.93622 1.00093 0.92102 1.19773 0.94065 1.01601 0.93697 1.22223 0.99064 1.11137 0.87070 1.66938 1.11009 1.10587 1.30093 1.22733 0.89088 1.10758 0.97637 1.18818 0.95319 0.90166 0.92343 1.19868 0.91438 1.36428 1.03147 0.89433 1.26858 1.06329 0.91262 0.93536 1.69837 1.41057 1.22365 1.10822 0.85094 0.75088 0.79051 0.79907 1.18510 1.19120 1.17938 1.21894 0.92516 1.03607 0.98773 1.21198 0.92584 0.99576 0.98685 0.93198 0.88925 0.92342 0.89894 0.91592 0.82931 0.83276 0.87013 0.83629 0.84600 0.89567 0.85539 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.64 16 2 O -0.41 -10.35 10.69 -148.98 -1.59 -11.95 16 3 C 0.11 2.37 6.06 71.23 0.43 2.80 16 4 C -0.10 -2.86 5.50 -19.90 -0.11 -2.97 16 5 C -0.10 -2.70 9.69 22.31 0.22 -2.48 16 6 C -0.12 -3.47 10.03 22.24 0.22 -3.25 16 7 C -0.12 -4.58 9.44 22.48 0.21 -4.37 16 8 C -0.05 -1.93 5.88 -20.04 -0.12 -2.05 16 9 C -0.09 -4.35 5.88 -19.99 -0.12 -4.46 16 10 C -0.04 -1.79 10.60 85.04 0.90 -0.89 16 11 N -0.48 -24.70 10.32 -192.76 -1.99 -26.69 16 12 C -0.04 -2.20 10.96 85.36 0.94 -1.27 16 13 C 0.04 2.07 5.59 -21.21 -0.12 1.95 16 14 C -0.48 -25.20 9.08 23.47 0.21 -24.98 16 15 H 0.09 4.36 7.90 -2.91 -0.02 4.34 16 16 C 0.04 1.78 5.18 85.25 0.44 2.22 16 17 N -0.82 -41.04 10.92 21.82 0.24 -40.81 16 18 Si 0.99 36.44 29.59 68.60 2.03 38.47 16 19 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 20 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 21 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 22 C -0.14 -7.56 8.17 23.14 0.19 -7.37 16 23 C -0.10 -3.59 9.09 22.48 0.20 -3.38 16 24 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 28 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 29 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 30 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 31 H 0.11 4.53 6.26 -2.91 -0.02 4.51 16 32 H 0.15 6.10 6.20 -2.91 -0.02 6.08 16 33 H 0.14 6.63 8.06 -2.91 -0.02 6.61 16 34 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 35 H 0.13 6.75 4.44 -2.91 -0.01 6.73 16 36 H 0.13 4.20 6.22 -2.91 -0.02 4.19 16 Total: -1.00 -63.66 309.09 4.53 -59.13 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 1.09 Total: 30.71 kcal Atomic # 6 Polarization: -53.62 SS G_CDS: 4.75 Total: -48.87 kcal Atomic # 7 Polarization: -65.75 SS G_CDS: -1.75 Total: -67.50 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -1.59 Total: -11.95 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 2.03 Total: 38.47 kcal Total: -63.66 4.53 -59.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239936844.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.690 kcal (2) G-P(sol) polarization free energy of solvation -63.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds